Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Forward (+)

4396860 .. 4400363

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0058500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTTCCACGTACCCAAGTTCCCTGTTTTACTTCTGCAGCTCCAGTTCTTCAAAACCCAGTTCAACTTCAGCCACACGCTTGCCCTTGGCTTTTTCTGGGTCTGGCTTTAATGGGTGCAATGGAGTTACAGTCACCAAAGCTTGGTCTAGTAGTAGCTCAAGAATATGTGCCAAGTTTGAAAAGTTCCAAGCTGAGGACAATCTTGAAGAGACCAACATGCCATCATCATCTTTACAAGAAGTTGAGGAAGATGGTGAGCAGGAAGAAGATGACAGCTGCTTGCCTTCGGACTTGGAGGGTGCAGTCCGTCAATCGGGTGAAGCAAGTGCATCATTTGTTTCTTCAGGAGGACTGAGAGCAATAGTTGAGCTTTTAATTCCCCAGCTGCAGTTTCTAGATGAAGAAGGGGCACAAGCTGAGCTCTGGGAGTTGTCAAGGGTTTTCCTGGATACCCTTATAGAGGAAACTGGATGTGAGAGAGTTAAAGCTGTATTTCCTGATGCTGGAGCAGCAGCACTACTAAAATATAAGTGGACAGATGCTGCCTTTGGATTTGCCAGCTTAAGTGACCGGAAACCCATAACAAGTGAAGATGAGATTGTGGTTATGATTGTTCCTGATTATCAGATGTTGGAATATGTAGAGAGACTTGCAGCCAGTCTTTCAGATGATCCGCCAAGGCCTCTAATCATGTGGAACCCACGTCTCATCAGTGAGGATGTTGGAGTTGGATTTAATGTACGAAAGTTAAGGCGGTACTTTCTGAGCACTTTTACGACGGTGTACTCAATGAGGCCTATGGAATCCGGTGCTGTATTTAGGTGCTATCCAGGGTCATGGAAGGTATTCTTCGATGATAAGGATAGACCAAACAGATATCTACTTGCAAAAGAGCTCCTGAGCCGTCCTGATGCTGAAGACCTTGAGATGATATTTGGAAATATGCAAGAGGATTCAGAGCAGGGCCCATCTTTGTTTGATAAAGCAGCAGGGATGTTCTCTTCAATGAACCGATTTATGAGGATCATTTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

346

Amino Acids

38.51

Weight (kDa)

4.55

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	96 - 310	2.2e-51	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	2 cut(s)	677, 757
AclWI	GGATC	2 cut(s)	668, 1034
AcuI	CTGAAG	3 cut(s)	54, 330, 939
AfaI	GTAC	4 cut(s)	14, 744, 761, 788
AfiI	CCNNNNNNNGG	5 cut(s)	144, 196, 316, 463, 506
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	6 cut(s)	54, 66, 182, 209, 1008, 1035
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	447, 832
Alw21I	GWGCWC	3 cut(s)	426, 773, 900
Alw26I	GTCTC	3 cut(s)	206, 643, 713
AlwI	GGATC	2 cut(s)	668, 1034
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	683, 797, 967
ApaI	GGGCCC	1 cut(s)	971
ApeKI	GCWGC	8 cut(s)	39, 279, 388, 512, 515, 545, 656, 989
Asp700I	GAANNNNTTC	1 cut(s)	848
AspS9I	GGNCC	2 cut(s)	967, 968
AsuHPI	GGTGA	3 cut(s)	127, 269, 332
BaeGI	GKGCMC	2 cut(s)	415, 971
BanII	GRGCYC	3 cut(s)	426, 900, 971
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	3 cut(s)	426, 773, 900
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	8 cut(s)	51, 266, 375, 524, 527, 532, 668, 1001
BccI	CCATC	3 cut(s)	232, 248, 979
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	2 cut(s)	449, 834
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	206, 643, 713
BfaI	CTAG	2 cut(s)	150, 398
BfmI	CTRYAG	2 cut(s)	37, 389
BfrI	CTTAAG	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	8 cut(s)	40, 280, 389, 513, 516, 546, 657, 990
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	8 cut(s)	41, 281, 390, 514, 517, 547, 658, 991
Bme1390I	CCNGG	2 cut(s)	449, 834
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	967, 968
BmiI	GGNNCC	2 cut(s)	701, 969
BmrFI	CCNGG	2 cut(s)	449, 834
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	341, 493, 532, 904
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	2 cut(s)	28, 528
Bpu10I	CCTNAGC	2 cut(s)	195, 902
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	145, 947
BsaAI	YACGTR	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	87, 680, 833
BsaWI	WCCGGW	2 cut(s)	573, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	5 cut(s)	144, 196, 316, 463, 506
Bse1I	ACTGG	4 cut(s)	45, 60, 475, 660
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	449, 834
BseDI	CCNNGG	3 cut(s)	87, 680, 833
BseGI	GGATG	3 cut(s)	479, 727, 1002
BseLI	CCNNNNNNNGG	5 cut(s)	144, 196, 316, 463, 506
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	5 cut(s)	186, 347, 411, 758, 893
BseNI	ACTGG	4 cut(s)	45, 60, 475, 660
BseSI	GKGCMC	2 cut(s)	415, 971
BseXI	GCAGC	8 cut(s)	51, 266, 375, 524, 527, 532, 668, 1001
BseYI	CCCAGC	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	685, 799, 969
BsiHKAI	GWGCWC	3 cut(s)	426, 773, 900
BsiSI	CCGG	2 cut(s)	574, 810
BslI	CCNNNNNNNGG	5 cut(s)	144, 196, 316, 463, 506
BsmAI	GTCTC	3 cut(s)	206, 643, 713
BsmBI	CGTCTC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	685, 799, 969
Bso31I	GGTCTC	1 cut(s)	206
Bsp120I	GGGCCC	1 cut(s)	967
Bsp1286I	GDGCHC	5 cut(s)	415, 426, 773, 900, 971
Bsp143I	GATC	2 cut(s)	673, 1026
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	677, 757
BspANI	GGCC	3 cut(s)	685, 799, 969
BspCNI	CTCAG	5 cut(s)	187, 348, 412, 759, 894
BspLI	GGNNCC	2 cut(s)	701, 969
BspMAI	CTGCAG	2 cut(s)	41, 393
BspPI	GGATC	2 cut(s)	668, 1034
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	4 cut(s)	45, 60, 475, 660
BssECI	CCNNGG	3 cut(s)	87, 680, 833
BssMI	GATC	2 cut(s)	673, 1026
BssT1I	CCWWGG	2 cut(s)	87, 680
Bst2UI	CCWGG	2 cut(s)	449, 834
Bst4CI	ACNGT	2 cut(s)	133, 784
Bst6I	CTCTTC	2 cut(s)	204, 1009
BstAFI	CTTAAG	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	83, 284, 562
BstDEI	CTNAG	5 cut(s)	195, 356, 420, 767, 902
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	479, 727, 1002
BstKTI	GATC	2 cut(s)	676, 1029
BstMAI	GTCTC	3 cut(s)	206, 643, 713
BstMBI	GATC	2 cut(s)	673, 1026
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	449, 834
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	447, 832
BstSFI	CTRYAG	2 cut(s)	37, 389
BstSLI	GKGCMC	2 cut(s)	415, 971
BstV1I	GCAGC	8 cut(s)	51, 266, 375, 524, 527, 532, 668, 1001
BstV2I	GAAGAC	1 cut(s)	927
BstXI	CCANNNNNNTGG	1 cut(s)	840
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	685, 799, 969
BtrI	CACGTC	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	479, 727, 1002
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	83, 284, 562
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	967, 968
Csp6I	GTAC	4 cut(s)	13, 743, 760, 787
CviAII	CATG	3 cut(s)	220, 694, 840
CviQI	GTAC	4 cut(s)	13, 743, 760, 787
DdeI	CTNAG	5 cut(s)	195, 356, 420, 767, 902
DpnI	GATC	2 cut(s)	675, 1028
DpnII	GATC	2 cut(s)	673, 1026
Eam1104I	CTCTTC	2 cut(s)	204, 1009
EarI	CTCTTC	2 cut(s)	204, 1009
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	2 cut(s)	424, 898
Eco130I	CCWWGG	2 cut(s)	87, 680
Eco147I	AGGCCT	2 cut(s)	685, 799
Eco24I	GRGCYC	3 cut(s)	426, 900, 971
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	881
Eco53kI	GAGCTC	2 cut(s)	424, 898
Eco57I	CTGAAG	3 cut(s)	54, 330, 939
EcoICRI	GAGCTC	2 cut(s)	424, 898
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	447, 832
EcoRV	GATATC	1 cut(s)	881
EcoT14I	CCWWGG	2 cut(s)	87, 680
EcoT38I	GRGCYC	3 cut(s)	426, 900, 971
ErhI	CCWWGG	2 cut(s)	87, 680
Esp3I	CGTCTC	1 cut(s)	713
FaeI	CATG	3 cut(s)	223, 697, 843
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FatI	CATG	3 cut(s)	219, 693, 839
Fnu4HI	GCNGC	8 cut(s)	40, 280, 389, 513, 516, 546, 657, 990
FokI	GGATG	3 cut(s)	486, 734, 1009
FriOI	GRGCYC	3 cut(s)	426, 900, 971
Fsp4HI	GCNGC	8 cut(s)	40, 280, 389, 513, 516, 546, 657, 990
FspBI	CTAG	2 cut(s)	150, 398
GluI	GCNGC	8 cut(s)	40, 280, 389, 513, 516, 546, 657, 990
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	2 cut(s)	28, 528
HaeIII	GGCC	3 cut(s)	685, 799, 969
HapII	CCGG	2 cut(s)	574, 810
Hin1II	CATG	3 cut(s)	223, 697, 843
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	2 cut(s)	806, 956
HpaII	CCGG	2 cut(s)	574, 810
HphI	GGTGA	3 cut(s)	127, 269, 332
Hpy166II	GTNNAC	2 cut(s)	537, 787
Hpy188I	TCNGA	5 cut(s)	292, 630, 670, 768, 961
Hpy188III	TCNNGA	8 cut(s)	162, 206, 348, 398, 500, 620, 901, 911
Hpy8I	GTNNAC	2 cut(s)	537, 787
Hpy99I	CGWCG	1 cut(s)	784
HpyAV	CCTTC	3 cut(s)	297, 401, 838
HpyCH4III	ACNGT	2 cut(s)	133, 784
HpyCH4IV	ACGT	2 cut(s)	11, 706
HpyCH4V	TGCA	8 cut(s)	39, 120, 305, 332, 391, 656, 890, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	195, 356, 420, 767, 902
HpySE526I	ACGT	2 cut(s)	11, 706
Hsp92II	CATG	3 cut(s)	223, 697, 843
Kzo9I	GATC	2 cut(s)	673, 1026
LmnI	GCTCC	3 cut(s)	47, 509, 903
Lsp1109I	GCAGC	8 cut(s)	51, 266, 375, 524, 527, 532, 668, 1001
LweI	GCATC	4 cut(s)	341, 493, 532, 904
MaeI	CTAG	2 cut(s)	150, 398
MaeII	ACGT	2 cut(s)	11, 706
MaeIII	GTNAC	3 cut(s)	127, 133, 569
MalI	GATC	2 cut(s)	675, 1028
MboI	GATC	2 cut(s)	673, 1026
MhlI	GDGCHC	5 cut(s)	415, 426, 773, 900, 971
MluCI	AATT	1 cut(s)	378
MmeI	TCCRAC	3 cut(s)	615, 706, 712
MroXI	GAANNNNTTC	1 cut(s)	848
MseI	TTAA	6 cut(s)	111, 377, 486, 566, 738, 752
MspA1I	CMGCKG	2 cut(s)	279, 388
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	2 cut(s)	574, 810
MspR9I	CCNGG	2 cut(s)	449, 834
MvaI	CCWGG	2 cut(s)	449, 834
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	2 cut(s)	673, 1026
NlaIII	CATG	3 cut(s)	223, 697, 843
NlaIV	GGNNCC	2 cut(s)	701, 969
NmuCI	GTSAC	2 cut(s)	133, 569
NspI	RCATGY	1 cut(s)	223
PceI	AGGCCT	2 cut(s)	685, 799
PdmI	GAANNNNTTC	1 cut(s)	848
PfeI	GAWTC	2 cut(s)	806, 956
PflMI	CCANNNNNTGG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	8 cut(s)	41, 281, 390, 514, 517, 547, 658, 991
Ppu21I	YACGTR	1 cut(s)	12
Psp124BI	GAGCTC	2 cut(s)	426, 900
Psp6I	CCWGG	2 cut(s)	447, 832
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	2 cut(s)	447, 832
PspN4I	GGNNCC	2 cut(s)	701, 969
PspOMI	GGGCCC	1 cut(s)	967
PspPI	GGNCC	2 cut(s)	967, 968
PstI	CTGCAG	2 cut(s)	41, 393
PstNI	CAGNNNCTG	1 cut(s)	545
PvuII	CAGCTG	2 cut(s)	279, 388
RsaI	GTAC	4 cut(s)	14, 744, 761, 788
RsaNI	GTAC	4 cut(s)	13, 743, 760, 787
SacI	GAGCTC	2 cut(s)	426, 900
SaqAI	TTAA	6 cut(s)	111, 377, 486, 566, 738, 752
SatI	GCNGC	8 cut(s)	40, 280, 389, 513, 516, 546, 657, 990
Sau3AI	GATC	2 cut(s)	673, 1026
Sau96I	GGNCC	2 cut(s)	967, 968
ScrFI	CCNGG	2 cut(s)	449, 834
SduI	GDGCHC	5 cut(s)	415, 426, 773, 900, 971
SfaNI	GCATC	4 cut(s)	341, 493, 532, 904
SfcI	CTRYAG	2 cut(s)	37, 389
SmlI	CTYRAG	3 cut(s)	160, 565, 926
SmoI	CTYRAG	3 cut(s)	160, 565, 926
Sse9I	AATT	1 cut(s)	378
SseBI	AGGCCT	2 cut(s)	685, 799
SsiI	CCGC	2 cut(s)	677, 757
SspMI	CTAG	2 cut(s)	150, 398
SstI	GAGCTC	2 cut(s)	426, 900
StuI	AGGCCT	2 cut(s)	685, 799
StyD4I	CCNGG	2 cut(s)	447, 832
StyI	CCWWGG	2 cut(s)	87, 680
TaaI	ACNGT	2 cut(s)	133, 784
TaiI	ACGT	2 cut(s)	14, 709
TaqI	TCGA	1 cut(s)	855
TasI	AATT	1 cut(s)	378
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	2 cut(s)	806, 956
Tru1I	TTAA	6 cut(s)	111, 377, 486, 566, 738, 752
Tru9I	TTAA	6 cut(s)	111, 377, 486, 566, 738, 752
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	2 cut(s)	133, 569
TseI	GCWGC	8 cut(s)	39, 279, 388, 512, 515, 545, 656, 989
Tsp45I	GTSAC	2 cut(s)	133, 569
TspDTI	ATGAA	2 cut(s)	417, 1025
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	565
XagI	CCTNNNNNAGG	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	848
XspI	CTAG	2 cut(s)	150, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.