Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Reverse (-)

25216630 .. 25224092

Gene Structure 7463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1171800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGTCCTCTGCTCTCAGCTTCCATATAAATACGGACGCAGGTCTCGCTTGTCCCGAATACAAACAGAGTGCACTATCTCTGTTCTCTCTCTCTCCCCCCTGCTCAGCTCTCAGTAGGGTTTGTTTTCTCTCTCTAAAACTCACACAATCCAATCGAACCGACATTTTCTCTCTCCTGATTCCCTTTCCTCAGCAGCGGAAGCGGAGCGAGTGGCCGAGAGAAATGGAGTCGTCCGCGATACATTTGGCCATGGCGGCTCTGGTTGGAGCTTCGCTGGTGGCCGTGTCGGCCTACTACATGCACCGCAAAACCCTAACTCAGTTATTGGAGTTCGCCAAGACGGTGGAGAGGGAGAGGGAGGGGGACTCCGACGGCGGCGGCGACTCGCCGCAGCGCATGAAGAAGCGTAGGAGCCACGCGCGGCGCAAGGGCAGCGGCTATTACCGGCGGAACTCGGCGTCTTTGCCGGACGTGACGGCAATTTCCGGAGGGATTGACGGCGATGATCATAGGCGCAACGGCTGCCTTCCCGTCGACGGTATTCCGGATGGGTTGCCGAGGCTGCACACTCTCCCGGAAGGGAAATCTACTGAGCTTGCGAATTCAGTTAAGAGAACCGGCAGTCTTATCCGACCACCGTCTCCCAAGTCTCCAGTTGCAAGTGCAAGTGCCTTTGAGAGCGTAGAAGGATCAGATGATGAGGATAACATGACTGACAATTCTAAACTTGGCACTGTGGGGCCAGATGGTAAGATCATATATGAAAATTTACCGAATCATGTTAATGCTAACGGAGAGCAAATACCTATAGCTGCTACAAGTATGATTAGGTCCCATAGTGTATCTGGTGATCTGCATGGTGTCCAGCCTGATCCAATTGCAGCTGATATCCTAAGGAAAGAGCCAGAACAAGAGACTTTTGCACGACTTAAAATTACTCCAACGGAAGTGCCATCTAGCGATGAAGCAGAGGTCTACGTGGTTCTTCAAGAATGCCTCGAATTGCGAAAAAGATATTTATTCAGTGAGACAGTTGCTCCATGGGAGAAAGAAATTATAACAGACCCAAGTACCCCAAAACCCAACCCAGCACCATTTTTTTATACTTCTGAGGGGAAATCTGATCATTATTTCGAAATGCAAGATGGGGTCATTCACGTGTTTCCAAATAAAGATTCAAAAGAAGAACTTTTTCCTGTTGCTGATGCAACAACCTTTTTCACTGACCTACATCACATACTCCGAGTTATAGCAGCAGGGAATATCAGAACTTTATGCCATCATCGGCTGAATCTTCTGGAACAAAAATTCAATCTTCACTTAATGCTAAATGCGGATAGGGAGTTTCTGGCTCAGAAAAGTGCTCCTCATCGTGACTTTTATAATGTCAGAAAAGTAGATACACATGTTCATCACTCAGCATGCATGAACCAGAAACATCTGTTGAGGTTTATAAAATCAAAGTTGAGGAAGGAGCCTGATGAGGTTGTAATATTTAGAGATGGAACCTATTTGACCTTGAAAGAGGTTTTTGAGAGTTTGGATTTGACTGGGTACGACCTGAATGTTGACCTTCTGGATGTTCATGCTGACAAGAGCACGTTTCATCGTTTCGATAAGTTTAATCTTAAGTACAACCCTTGTGGTCAAAGTAGGCTCCGGGAGATTTTCCTTAAGCAGGATAATCTTATTCAAGGACGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTGCTGCCAGTAAATATCAGATGGCTGAGTACAGGATATCGATATATGGTAGGAAGCAGAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTTTGGTTGATTCAGCTGCCCCGGCTGTACAATATATACAAGGAAATGGGAATAGTAACATCATTTCAGAACATTCTTGACAATATCTTTATTCCACTGTTTGAGGTTACTGTAGATCCAGATTCCCATCCACAGTTGCACGTTTTCCTGAAACAGGTTGTGGGGTTAGATTTGGTGGATGATGAAACCAAACCTGAAAGACGGCCCACGAAACACATGCCAACACCAGCACAATGGACCAATGTATTCAATCCCGCATTTTCATACTACGTGTACTACTGTTATGCTAATCTCTACACATTAAACAAGCTTCGTGAATCTAAGGGCATGACAACAATCAAATTCCGTCCACATTCTGGGGAGGCTGGTGACATTGACCACCTTGCTGCAACATTTCTTACCGCAAATAATATTGCACATGGAATCAATTTGAGAAAATCTCCTGTACTTCAATATCTGTATTATTTAGCCCAGATTGGTCTGGCTATGTCACCCCTGAGCAACAATTCATTGTTTTTGGACTACCATCGGAACCCTTTTCCTATGTTTTTCTTACGGGGTCTTAATGTTTCTCTTTCCACCGATGATCCTCTCCAAATCCACTTAACAAAAGAACCTTTGGTGGAAGAATATAGTATAGCTGCTTCTGTATGGAAATTGAGCTCATGTGATCTATGTGAAATTGCGCGTAATTCAGTCTACCAATCAGGTTTTTCACATGCACTGAAGTCGCACTGGATTGGTAGAGAGTACTACAAGAGAGGACCAGGTGGAAATGATATCCACAAAACAAATGTGCCTCATATCCGGGTGCAATTTCGTGACACGATCTGGAGAGAAGAGATGCAACAGGTTTATCTCAGCAAGGTCAATATCCCAAACGAAGTTGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

918

Amino Acids

104.29

Weight (kDa)

6.67

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	313 - 904	0.0	AMP deaminase
A_deaminase	PF00962	732 - 858	2.4e-09	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1058, 1383, 1454
Acc36I	ACCTGC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	2213
AccI	GTMKAC	3 cut(s)	534, 975, 2556
AccII	CGCG	4 cut(s)	236, 419, 421, 2545
AccIII	TCCGGA	2 cut(s)	485, 544
AclWI	GGATC	4 cut(s)	697, 866, 1967, 2438
AcoI	YGGCCR	3 cut(s)	212, 246, 279
AcsI	RAATTY	4 cut(s)	601, 766, 1307, 2198
AcuI	CTGAAG	1 cut(s)	2603
AcvI	CACGTG	1 cut(s)	1159
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	9 cut(s)	1072, 1556, 1634, 1769, 1844, 1886, 2132, 2304, 2609
AfiI	CCNNNNNNNGG	4 cut(s)	536, 1678, 2011, 2213
AflII	CTTAAG	2 cut(s)	1628, 1673
AflIII	ACRYGT	3 cut(s)	1158, 1405, 2127
AgsI	TTSAA	7 cut(s)	989, 1179, 1312, 1522, 1694, 2107, 2309
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	2623
AjuI	GAANNNNNNNTTGG	2 cut(s)	1159, 1191
Alw21I	GWGCWC	4 cut(s)	73, 1366, 1601, 2522
Alw26I	GTCTC	5 cut(s)	47, 645, 654, 908, 1022
Alw44I	GTGCAC	1 cut(s)	69
AlwI	GGATC	4 cut(s)	697, 866, 1967, 2438
Aor13HI	TCCGGA	2 cut(s)	485, 544
AoxI	GGCC	6 cut(s)	212, 246, 279, 288, 740, 2060
ApaLI	GTGCAC	1 cut(s)	69
ApoI	RAATTY	4 cut(s)	601, 766, 1307, 2198
Asp700I	GAANNNNTTC	1 cut(s)	1191
AspLEI	GCGC	5 cut(s)	396, 421, 426, 516, 2545
AspS9I	GGNCC	6 cut(s)	740, 831, 1807, 2061, 2094, 2621
AsuC2I	CCSGG	4 cut(s)	575, 1661, 1879, 2666
AsuHPI	GGTGA	3 cut(s)	860, 2237, 2340
AsuII	TTCGAA	1 cut(s)	1134
AvaII	GGWCC	4 cut(s)	831, 1807, 2094, 2621
AxyI	CCTNAGG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	73
BaeI	ACNNNNGTAYC	4 cut(s)	1054, 1087, 1392, 1425
BalI	TGGCCA	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	2522
BarI	GAAGNNNNNNTAC	2 cut(s)	2485, 2517
BbrPI	CACGTG	1 cut(s)	1159
Bbv12I	GWGCWC	4 cut(s)	73, 1366, 1601, 2522
BbvCI	CCTCAGC	1 cut(s)	189
BccI	CCATC	9 cut(s)	542, 740, 961, 1139, 1287, 1496, 1753, 1992, 2391
BceAI	ACGGC	6 cut(s)	266, 388, 492, 514, 535, 2075
BcgI	CGANNNNNNTGC	4 cut(s)	2056, 2090, 2568, 2602
BciT130I	CCWGG	1 cut(s)	2625
BclI	TGATCA	2 cut(s)	505, 1123
BcnI	CCSGG	4 cut(s)	575, 1661, 1879, 2666
BcoDI	GTCTC	5 cut(s)	47, 645, 654, 908, 1022
BfaI	CTAG	2 cut(s)	957, 1818
BfmI	CTRYAG	2 cut(s)	807, 1968
BfrI	CTTAAG	2 cut(s)	1628, 1673
BfuAI	ACCTGC	1 cut(s)	29
BglI	GCCNNNNNGGC	2 cut(s)	254, 287
BlpI	GCTNAGC	2 cut(s)	103, 1710
BmcAI	AGTACT	1 cut(s)	2609
Bme1390I	CCNGG	5 cut(s)	575, 1661, 1879, 2625, 2666
Bme18I	GGWCC	4 cut(s)	831, 1807, 2094, 2621
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	6 cut(s)	740, 831, 1807, 2061, 2094, 2621
BmiI	GGNNCC	8 cut(s)	413, 741, 833, 1476, 1507, 1658, 1808, 2390
BmrFI	CCNGG	5 cut(s)	575, 1661, 1879, 2625, 2666
BmrI	ACTGGG	1 cut(s)	1560
BmsI	GCATC	2 cut(s)	1195, 2691
BmuI	ACTGGG	1 cut(s)	1560
BoxI	GACNNNNGTC	2 cut(s)	39, 637
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 2281, 2313
BpmI	CTGGAG	2 cut(s)	636, 2710
Bpu10I	CCTNAGC	2 cut(s)	189, 2354
Bpu1102I	GCTNAGC	2 cut(s)	103, 1710
Bpu14I	TTCGAA	1 cut(s)	1134
BpuMI	CCSGG	4 cut(s)	575, 1661, 1879, 2666
Bsa29I	ATCGAT	1 cut(s)	1778
BsaAI	YACGTR	3 cut(s)	979, 1159, 2128
BsaBI	GATNNNNATC	1 cut(s)	1983
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	249, 557, 1040, 1877
BsaWI	WCCGGW	2 cut(s)	485, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bsc4I	CCNNNNNNNGG	4 cut(s)	536, 1678, 2011, 2213
Bse118I	RCCGGY	2 cut(s)	444, 617
Bse1I	ACTGG	4 cut(s)	653, 1555, 1746, 2597
Bse21I	CCTNAGG	1 cut(s)	893
Bse8I	GATNNNNATC	1 cut(s)	1983
BseAI	TCCGGA	2 cut(s)	485, 544
BseBI	CCWGG	1 cut(s)	2625
BseCI	ATCGAT	1 cut(s)	1778
BseDI	CCNNGG	4 cut(s)	249, 557, 1040, 1877
BseGI	GGATG	4 cut(s)	553, 1585, 1984, 2041
BseJI	GATNNNNATC	1 cut(s)	1983
BseLI	CCNNNNNNNGG	4 cut(s)	536, 1678, 2011, 2213
BseNI	ACTGG	4 cut(s)	653, 1555, 1746, 2597
BseRI	GAGGAG	1 cut(s)	1356
BseSI	GKGCMC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	1087
BsgI	GTGCAG	1 cut(s)	548
Bsh1236I	CGCG	4 cut(s)	236, 419, 421, 2545
BshFI	GGCC	6 cut(s)	214, 248, 281, 290, 742, 2062
BshVI	ATCGAT	1 cut(s)	1778
BsiHKAI	GWGCWC	4 cut(s)	73, 1366, 1601, 2522
BsiSI	CCGG	9 cut(s)	445, 467, 486, 545, 575, 618, 1660, 1879, 2665
BslFI	GGGAC	4 cut(s)	36, 377, 817, 1820
BslI	CCNNNNNNNGG	4 cut(s)	536, 1678, 2011, 2213
BsmAI	GTCTC	5 cut(s)	47, 645, 654, 908, 1022
BsmBI	CGTCTC	1 cut(s)	645
BsmFI	GGGAC	4 cut(s)	36, 377, 817, 1820
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	6 cut(s)	214, 248, 281, 290, 742, 2062
Bso31I	GGTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	1134
Bsp1286I	GDGCHC	4 cut(s)	73, 1366, 1601, 2522
Bsp13I	TCCGGA	2 cut(s)	485, 544
Bsp1407I	TGTACA	2 cut(s)	1842, 1884
Bsp1720I	GCTNAGC	2 cut(s)	103, 1710
Bsp19I	CCATGG	2 cut(s)	249, 1040
BspANI	GGCC	6 cut(s)	214, 248, 281, 290, 742, 2062
BspDI	ATCGAT	1 cut(s)	1778
BspEI	TCCGGA	2 cut(s)	485, 544
BspFNI	CGCG	4 cut(s)	236, 419, 421, 2545
BspLI	GGNNCC	8 cut(s)	413, 741, 833, 1476, 1507, 1658, 1808, 2390
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	697, 866, 1967, 2438
BspT104I	TTCGAA	1 cut(s)	1134
BspTI	CTTAAG	2 cut(s)	1628, 1673
BspTNI	GGTCTC	1 cut(s)	47
BsrFI	RCCGGY	2 cut(s)	444, 617
BsrGI	TGTACA	2 cut(s)	1842, 1884
BsrI	ACTGG	4 cut(s)	653, 1555, 1746, 2597
BssAI	RCCGGY	2 cut(s)	444, 617
BssECI	CCNNGG	4 cut(s)	249, 557, 1040, 1877
BssNI	GRCGYC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	249, 1040
Bst2UI	CCWGG	1 cut(s)	2625
Bst6I	CTCTTC	1 cut(s)	2691
BstACI	GRCGYC	1 cut(s)	458
BstAFI	CTTAAG	2 cut(s)	1628, 1673
BstAPI	GCANNNNNTGC	1 cut(s)	522
BstAUI	TGTACA	2 cut(s)	1842, 1884
BstBAI	YACGTR	3 cut(s)	979, 1159, 2128
BstBI	TTCGAA	1 cut(s)	1134
BstC8I	GCNNGC	2 cut(s)	597, 1423
BstDSI	CCRYGG	2 cut(s)	249, 1040
BstENI	CCTNNNNNAGG	2 cut(s)	1676, 2009
BstF5I	GGATG	4 cut(s)	553, 1585, 1984, 2041
BstFNI	CGCG	4 cut(s)	236, 419, 421, 2545
BstHHI	GCGC	5 cut(s)	396, 421, 426, 516, 2545
BstMAI	GTCTC	5 cut(s)	47, 645, 654, 908, 1022
BstMWI	GCNNNNNNNGC	9 cut(s)	44, 199, 254, 287, 432, 522, 562, 1720, 1879
BstNI	CCWGG	1 cut(s)	2625
BstNSI	RCATGY	5 cut(s)	301, 1409, 1425, 2077, 2579
BstPAI	GACNNNNGTC	2 cut(s)	39, 637
BstSCI	CCNGG	5 cut(s)	573, 1659, 1877, 2623, 2664
BstSFI	CTRYAG	2 cut(s)	807, 1968
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	4 cut(s)	236, 419, 421, 2545
BstX2I	RGATCY	1 cut(s)	1972
BstXI	CCANNNNNNTGG	2 cut(s)	343, 2091
BstYI	RGATCY	1 cut(s)	1972
Bsu15I	ATCGAT	1 cut(s)	1778
Bsu36I	CCTNAGG	1 cut(s)	893
BsuRI	GGCC	6 cut(s)	214, 248, 281, 290, 742, 2062
BsuTUI	ATCGAT	1 cut(s)	1778
BtgI	CCRYGG	2 cut(s)	249, 1040
BtgZI	GCGATG	2 cut(s)	516, 975
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	4 cut(s)	553, 1585, 1984, 2041
BtsIMutI	CAGTG	7 cut(s)	732, 1030, 1221, 1852, 1952, 2579, 2590
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	597, 1423
CfoI	GCGC	5 cut(s)	396, 421, 426, 516, 2545
Cfr10I	RCCGGY	2 cut(s)	444, 617
Cfr13I	GGNCC	6 cut(s)	740, 831, 1807, 2061, 2094, 2621
ClaI	ATCGAT	1 cut(s)	1778
CseI	GACGC	2 cut(s)	44, 447
CsiI	ACCWGGT	1 cut(s)	2623
Csp6I	GTAC	9 cut(s)	1071, 1555, 1633, 1768, 1843, 1885, 2131, 2303, 2608
CspCI	CAANNNNNGTGG	2 cut(s)	1624, 1659
CviQI	GTAC	9 cut(s)	1071, 1555, 1633, 1768, 1843, 1885, 2131, 2303, 2608
EaeI	YGGCCR	3 cut(s)	212, 246, 279
Eam1104I	CTCTTC	1 cut(s)	2691
EarI	CTCTTC	1 cut(s)	2691
EciI	GGCGGA	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	2520
Eco130I	CCWWGG	2 cut(s)	249, 1040
Eco24I	GRGCYC	1 cut(s)	2522
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	3 cut(s)	889, 1776, 2638
Eco47I	GGWCC	4 cut(s)	831, 1807, 2094, 2621
Eco53kI	GAGCTC	1 cut(s)	2520
Eco57I	CTGAAG	1 cut(s)	2603
Eco72I	CACGTG	1 cut(s)	1159
Eco81I	CCTNAGG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	2520
EcoNI	CCTNNNNNAGG	2 cut(s)	1676, 2009
EcoO109I	RGGNCCY	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	2623
EcoRV	GATATC	3 cut(s)	889, 1776, 2638
EcoT14I	CCWWGG	2 cut(s)	249, 1040
EcoT22I	ATGCAT	1 cut(s)	1427
EcoT38I	GRGCYC	1 cut(s)	2522
ErhI	CCWWGG	2 cut(s)	249, 1040
Esp3I	CGTCTC	1 cut(s)	645
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FaqI	GGGAC	4 cut(s)	36, 377, 817, 1820
FauI	CCCGC	1 cut(s)	2119
FbaI	TGATCA	2 cut(s)	505, 1123
FblI	GTMKAC	3 cut(s)	534, 975, 2556
FokI	GGATG	4 cut(s)	560, 1592, 1971, 2048
FriOI	GRGCYC	1 cut(s)	2522
FspBI	CTAG	2 cut(s)	957, 1818
GlaI	GCGC	5 cut(s)	395, 420, 425, 515, 2544
GsaI	CCCAGC	1 cut(s)	1091
GsuI	CTGGAG	2 cut(s)	636, 2710
HaeIII	GGCC	6 cut(s)	214, 248, 281, 290, 742, 2062
HapII	CCGG	9 cut(s)	445, 467, 486, 545, 575, 618, 1660, 1879, 2665
HgaI	GACGC	2 cut(s)	44, 447
HhaI	GCGC	5 cut(s)	396, 421, 426, 516, 2545
Hin1I	GRCGYC	1 cut(s)	458
Hin6I	GCGC	5 cut(s)	394, 419, 424, 514, 2543
HinP1I	GCGC	5 cut(s)	394, 419, 424, 514, 2543
HincII	GTYRAC	3 cut(s)	535, 1570, 2746
HindII	GTYRAC	3 cut(s)	535, 1570, 2746
HindIII	AAGCTT	1 cut(s)	2165
HpaII	CCGG	9 cut(s)	445, 467, 486, 545, 575, 618, 1660, 1879, 2665
HphI	GGTGA	3 cut(s)	860, 2237, 2340
Hpy166II	GTNNAC	9 cut(s)	71, 535, 976, 1570, 1831, 2131, 2207, 2557, 2746
Hpy8I	GTNNAC	9 cut(s)	71, 535, 976, 1570, 1831, 2131, 2207, 2557, 2746
Hpy99I	CGWCG	3 cut(s)	374, 536, 539
HpyAV	CCTTC	5 cut(s)	536, 572, 680, 1465, 1583
HpyCH4IV	ACGT	7 cut(s)	471, 978, 1158, 1601, 1699, 1998, 2127
HpyF10VI	GCNNNNNNNGC	9 cut(s)	44, 199, 254, 287, 432, 522, 562, 1720, 1879
HpySE526I	ACGT	7 cut(s)	471, 978, 1158, 1601, 1699, 1998, 2127
Hsp92I	GRCGYC	1 cut(s)	458
HspAI	GCGC	5 cut(s)	394, 419, 424, 514, 2543
Kpn2I	TCCGGA	2 cut(s)	485, 544
Ksp22I	TGATCA	2 cut(s)	505, 1123
LmnI	GCTCC	7 cut(s)	204, 266, 411, 1042, 1369, 1474, 1662
LweI	GCATC	2 cut(s)	1195, 2691
MabI	ACCWGGT	1 cut(s)	2623
MaeI	CTAG	2 cut(s)	957, 1818
MaeII	ACGT	7 cut(s)	471, 978, 1158, 1601, 1699, 1998, 2127
MaeIII	GTNAC	7 cut(s)	472, 1373, 1912, 1963, 2225, 2346, 2678
MboII	GAAGA	7 cut(s)	412, 977, 1196, 1286, 1307, 2495, 2708
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	1972
MhlI	GDGCHC	4 cut(s)	73, 1366, 1601, 2522
MlsI	TGGCCA	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	3 cut(s)	236, 359, 377
MmeI	TCCRAC	5 cut(s)	244, 393, 655, 965, 1802
Mox20I	TGGCCA	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	1427
MroI	TCCGGA	2 cut(s)	485, 544
MroXI	GAANNNNTTC	1 cut(s)	1191
MscI	TGGCCA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	783, 1157
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	4 cut(s)	196, 435, 884, 1873
MspCI	CTTAAG	2 cut(s)	1628, 1673
MspI	CCGG	9 cut(s)	445, 467, 486, 545, 575, 618, 1660, 1879, 2665
MspR9I	CCNGG	5 cut(s)	575, 1661, 1879, 2625, 2666
MteI	GCGCNGCGC	1 cut(s)	422
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	1 cut(s)	2625
MvnI	CGCG	4 cut(s)	236, 419, 421, 2545
MwoI	GCNNNNNNNGC	9 cut(s)	44, 199, 254, 287, 432, 522, 562, 1720, 1879
NciI	CCSGG	4 cut(s)	575, 1661, 1879, 2666
NcoI	CCATGG	2 cut(s)	249, 1040
NlaIV	GGNNCC	8 cut(s)	413, 741, 833, 1476, 1507, 1658, 1808, 2390
NmeAIII	GCCGAG	3 cut(s)	240, 434, 582
NmuCI	GTSAC	5 cut(s)	472, 1373, 2225, 2346, 2678
NsiI	ATGCAT	1 cut(s)	1427
NspI	RCATGY	5 cut(s)	301, 1409, 1425, 2077, 2579
NspV	TTCGAA	1 cut(s)	1134
PaeI	GCATGC	1 cut(s)	1425
PciI	ACATGT	1 cut(s)	1405
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 378
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	1191
PfeI	GAWTC	8 cut(s)	178, 775, 1175, 1291, 1867, 1979, 2174, 2280
PflMI	CCANNNNNTGG	1 cut(s)	2213
PfoI	TCCNGGA	2 cut(s)	573, 1659
PleI	GAGTC	3 cut(s)	235, 359, 377
PmaCI	CACGTG	1 cut(s)	1159
PmlI	CACGTG	1 cut(s)	1159
PpsI	GAGTC	3 cut(s)	235, 359, 377
Ppu21I	YACGTR	3 cut(s)	979, 1159, 2128
PpuMI	RGGWCCY	1 cut(s)	831
PscI	ACATGT	1 cut(s)	1405
PshAI	GACNNNNGTC	2 cut(s)	39, 637
PsiI	TTATAA	3 cut(s)	1058, 1383, 1454
Psp124BI	GAGCTC	1 cut(s)	2522
Psp5II	RGGWCCY	1 cut(s)	831
Psp6I	CCWGG	1 cut(s)	2623
PspCI	CACGTG	1 cut(s)	1159
PspFI	CCCAGC	1 cut(s)	1087
PspGI	CCWGG	1 cut(s)	2623
PspN4I	GGNNCC	8 cut(s)	413, 741, 833, 1476, 1507, 1658, 1808, 2390
PspPI	GGNCC	6 cut(s)	740, 831, 1807, 2061, 2094, 2621
PspPPI	RGGWCCY	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	1972
PvuII	CAGCTG	2 cut(s)	884, 1873
RsaI	GTAC	9 cut(s)	1072, 1556, 1634, 1769, 1844, 1886, 2132, 2304, 2609
RsaNI	GTAC	9 cut(s)	1071, 1555, 1633, 1768, 1843, 1885, 2131, 2303, 2608
RseI	CAYNNNNRTG	2 cut(s)	783, 1157
SacI	GAGCTC	1 cut(s)	2522
SalI	GTCGAC	1 cut(s)	533
Sau96I	GGNCC	6 cut(s)	740, 831, 1807, 2061, 2094, 2621
ScaI	AGTACT	1 cut(s)	2609
SchI	GAGTC	3 cut(s)	236, 359, 377
ScrFI	CCNGG	5 cut(s)	575, 1661, 1879, 2625, 2666
SduI	GDGCHC	4 cut(s)	73, 1366, 1601, 2522
SexAI	ACCWGGT	1 cut(s)	2623
SfaNI	GCATC	2 cut(s)	1195, 2691
SfcI	CTRYAG	2 cut(s)	807, 1968
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	1134
SgrDI	CGTCGACG	1 cut(s)	533
SinI	GGWCC	4 cut(s)	831, 1807, 2094, 2621
SmiMI	CAYNNNNRTG	2 cut(s)	783, 1157
SmlI	CTYRAG	2 cut(s)	1628, 1673
SmoI	CTYRAG	2 cut(s)	1628, 1673
SphI	GCATGC	1 cut(s)	1425
SspI	AATATT	2 cut(s)	1494, 2269
SspMI	CTAG	2 cut(s)	957, 1818
SstI	GAGCTC	1 cut(s)	2522
StyD4I	CCNGG	5 cut(s)	573, 1659, 1877, 2623, 2664
StyI	CCWWGG	2 cut(s)	249, 1040
TaiI	ACGT	7 cut(s)	474, 981, 1161, 1604, 1702, 2001, 2130
TaqI	TCGA	6 cut(s)	154, 534, 999, 1134, 1614, 1778
TatI	WGTACW	7 cut(s)	1632, 1767, 1842, 1884, 2130, 2302, 2607
TauI	GCSGC	6 cut(s)	257, 378, 381, 391, 424, 438
TfiI	GAWTC	8 cut(s)	178, 775, 1175, 1291, 1867, 1979, 2174, 2280
TscAI	CASTG	7 cut(s)	739, 1030, 1228, 1852, 1959, 2586, 2597
TseFI	GTSAC	5 cut(s)	472, 1373, 2225, 2346, 2678
Tsp45I	GTSAC	5 cut(s)	472, 1373, 2225, 2346, 2678
TspGWI	ACGGA	4 cut(s)	47, 807, 959, 2192
TspRI	CASTG	7 cut(s)	739, 1030, 1228, 1852, 1959, 2586, 2597
Van91I	CCANNNNNTGG	1 cut(s)	2213
Vha464I	CTTAAG	2 cut(s)	1628, 1673
VneI	GTGCAC	1 cut(s)	69
VpaK11BI	GGWCC	4 cut(s)	831, 1807, 2094, 2621
XagI	CCTNNNNNAGG	2 cut(s)	1676, 2009
XapI	RAATTY	4 cut(s)	601, 766, 1307, 2198
XceI	RCATGY	5 cut(s)	301, 1409, 1425, 2077, 2579
XcmI	CCANNNNNNNNNTGG	2 cut(s)	256, 842
XmiI	GTMKAC	3 cut(s)	534, 975, 2556
XmnI	GAANNNNTTC	1 cut(s)	1191
XspI	CTAG	2 cut(s)	957, 1818
ZrmI	AGTACT	1 cut(s)	2609
Zsp2I	ATGCAT	1 cut(s)	1427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.