Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

44625676 .. 44627330

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1188100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAACACAATTTTATTTTATGCTTTGGTTGGCAGGAAAAACCTTAATAGTAGATCAATATGTTTATAATTGTGAAGATAGAAAGACATACACCATATATTCTTATCACGTCAAATTTCTTGGATATTCACTTCTTTCTTATGCCTGTTATTTCATATTAAATTTGATAAAGGTACAAGGAGAACACCATAGATCGAAATTTATCACTACAAAAGCAACTCCAACGTTATGCTCTTGTTTCCCTCAGTGCCGAGTTCTAAGGGAATGGTTAAAGGAGCATGCGGATGCATCACAGTTGGACAAGTTGAAATGGATGTACTATGTAATTGATAAGAGTCCATGGTATGTATTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

120

Amino Acids

14.37

Weight (kDa)

8.93

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AciI	CCGC	1 cut(s)	284
AclI	AACGTT	1 cut(s)	227
AcsI	RAATTY	3 cut(s)	116, 163, 200
AfaI	GTAC	2 cut(s)	177, 320
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	112
ApoI	RAATTY	3 cut(s)	116, 163, 200
BmgBI	CACGTC	1 cut(s)	112
BmsI	GCATC	2 cut(s)	277, 299
BsaJI	CCNNGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	292, 321
BseMII	CTCAG	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	55, 194
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	55, 194
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	246, 260
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	292, 321
BstKTI	GATC	2 cut(s)	58, 197
BstMBI	GATC	2 cut(s)	55, 194
BstNSI	RCATGY	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	341
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	292, 321
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	176, 319
CviAII	CATG	2 cut(s)	281, 342
CviQI	GTAC	2 cut(s)	176, 319
DdeI	CTNAG	2 cut(s)	246, 260
DpnI	GATC	2 cut(s)	57, 196
DpnII	GATC	2 cut(s)	55, 194
Eco130I	CCWWGG	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	284, 345
FatI	CATG	2 cut(s)	280, 341
FokI	GGATG	2 cut(s)	299, 328
Hin1II	CATG	2 cut(s)	284, 345
HinfI	GANTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	111, 227
HpyCH4V	TGCA	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	246, 260
HpySE526I	ACGT	2 cut(s)	111, 227
Hsp92II	CATG	2 cut(s)	284, 345
Kzo9I	GATC	2 cut(s)	55, 194
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	2 cut(s)	21, 160
LweI	GCATC	2 cut(s)	277, 299
MaeII	ACGT	2 cut(s)	111, 227
MalI	GATC	2 cut(s)	57, 196
MboI	GATC	2 cut(s)	55, 194
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	6 cut(s)	11, 70, 116, 163, 200, 327
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	2 cut(s)	248, 279
MnlI	CCTC	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	4 cut(s)	47, 161, 272, 358
MslI	CAYNNNNRTG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	55, 194
NlaIII	CATG	2 cut(s)	284, 345
NmeAIII	GCCGAG	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	227
RsaI	GTAC	2 cut(s)	177, 320
RsaNI	GTAC	2 cut(s)	176, 319
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	47, 161, 272, 358
Sau3AI	GATC	2 cut(s)	55, 194
SchI	GAGTC	1 cut(s)	346
SetI	ASST	4 cut(s)	47, 114, 177, 230
SfaNI	GCATC	2 cut(s)	277, 299
SmiMI	CAYNNNNRTG	1 cut(s)	285
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	6 cut(s)	11, 70, 116, 163, 200, 327
SsiI	CCGC	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	2 cut(s)	114, 230
TaqI	TCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	11, 70, 116, 163, 200, 327
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	4 cut(s)	47, 161, 272, 358
Tru9I	TTAA	4 cut(s)	47, 161, 272, 358
TscAI	CASTG	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	3 cut(s)	116, 163, 200
XceI	RCATGY	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.