RLG00000008648

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011603
Physical Location & Seq
Reverse (-)
34060962 .. 34065037
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008648

Sequence Viewer

Length: 360 bp
ATGATTGCTAGCATTGGCAACAAGAAGGTGGAGATAATATTTGACCAGAAGCATTGGGTCCCAAATACTGAATGTAGTAATAAGAAGTTCACTACCGCTATAGGGACTGAGGTAAAAAATCGAGCTCCGGATAAATGCGAGAAGAATTCATCTAGCCGAAAGAGACGAAGGAGTACACATTGCGGCGGAGCTATGCCTTTCATTCAACATGCTTTAAAGACAGCCAAGGTAAATTTAATGAGTTTCAACCTCGCTAAGCTTAGGCGACCCGCCTCTAGCCTCGCCACCGCCTGCGCCGCATGCCTACTTGCACCCACACCACTAACATCCTCGAGCACCATTTCACGCTTTCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.06

Weight (kDa)

10.36

Isoelectric Point (pI)

75.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 6 cut(s) 96, 183, 186, 270, 288, 297
AcsI RAATTY 2 cut(s) 145, 232
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 206, 247
AluBI AGCT 3 cut(s) 125, 191, 259
AluI AGCT 3 cut(s) 125, 191, 259
Alw21I GWGCWC 2 cut(s) 127, 338
Alw26I GTCTC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 127
ApoI RAATTY 2 cut(s) 145, 232
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 127, 338
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 3 cut(s) 9, 153, 276
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 2 cut(s) 184, 297
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 2 cut(s) 185, 298
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 59, 60
BmtI GCTAGC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 127, 338
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 44, 118
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 44, 118
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 127, 338
Bsp13I TCCGGA 1 cut(s) 127
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 6 cut(s) 96, 183, 186, 270, 288, 297
BspCNI CTCAG 1 cut(s) 100
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 59, 60
BspOI GCTAGC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 10, 292, 301
BstDEI CTNAG 3 cut(s) 108, 255, 260
BstF5I GGATG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 296, 300
BstNSI RCATGY 2 cut(s) 212, 303
BstSFI CTRYAG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 326
Cac8I GCNNGC 3 cut(s) 10, 292, 301
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 174
CviAII CATG 2 cut(s) 209, 300
CviJI RGCY 6 cut(s) 125, 156, 191, 224, 259, 279
CviKI_1 RGCY 6 cut(s) 125, 156, 191, 224, 259, 279
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 3 cut(s) 108, 255, 260
DraI TTTAAA 1 cut(s) 216
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 2 cut(s) 212, 303
FaiI YATR 4 cut(s) 101, 194, 210, 301
FaqI GGGAC 2 cut(s) 44, 118
FatI CATG 2 cut(s) 208, 299
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 184, 297
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 184, 297
FspBI CTAG 3 cut(s) 9, 153, 276
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 184, 297
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 212, 303
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 257
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 90, 176
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 90, 176
HpyAV CCTTC 2 cut(s) 19, 162
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 300
HpyF3I CTNAG 3 cut(s) 108, 255, 260
Hsp92II CATG 2 cut(s) 212, 303
HspAI GCGC 1 cut(s) 294
KflI GGGWCCC 1 cut(s) 58
Kpn2I TCCGGA 1 cut(s) 127
LmnI GCTCC 2 cut(s) 130, 188
LpnPI CCDG 3 cut(s) 59, 141, 304
MaeI CTAG 3 cut(s) 9, 153, 276
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 127, 338
MluCI AATT 2 cut(s) 145, 232
MnlI CCTC 5 cut(s) 103, 260, 283, 290, 340
MroI TCCGGA 1 cut(s) 127
MseI TTAA 2 cut(s) 215, 236
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 296, 300
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 212, 303
NlaIV GGNNCC 2 cut(s) 59, 60
NspI RCATGY 2 cut(s) 212, 303
PaeI GCATGC 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 331
PkrI GCNGC 2 cut(s) 185, 298
PpuMI RGGWCCY 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 59, 60
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PspXI VCTCGAGB 1 cut(s) 331
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 215, 236
SatI GCNGC 2 cut(s) 184, 297
Sau96I GGNCC 1 cut(s) 58
SduI GDGCHC 2 cut(s) 127, 338
SetI ASST 7 cut(s) 30, 114, 127, 193, 231, 252, 261
SfcI CTRYAG 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 331
SmlI CTYRAG 2 cut(s) 331, 353
SmoI CTYRAG 2 cut(s) 331, 353
SphI GCATGC 1 cut(s) 303
Sse9I AATT 2 cut(s) 145, 232
SsiI CCGC 6 cut(s) 96, 183, 186, 270, 288, 297
SspI AATATT 1 cut(s) 39
SspMI CTAG 3 cut(s) 9, 153, 276
SstI GAGCTC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 121, 332
TasI AATT 2 cut(s) 145, 232
TatI WGTACW 1 cut(s) 173
TauI GCSGC 2 cut(s) 186, 299
Tru1I TTAA 2 cut(s) 215, 236
Tru9I TTAA 2 cut(s) 215, 236
TspDTI ATGAA 2 cut(s) 138, 190
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 2 cut(s) 145, 232
XceI RCATGY 2 cut(s) 212, 303
XhoI CTCGAG 1 cut(s) 331
XspI CTAG 3 cut(s) 9, 153, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.