Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Reverse (-)

12362885 .. 12364195

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACTTTGGAGAAAGCACGGTCTGACATTAGAGATGTGGGGTTCGGGCAACTTCCTGTGCTCCAAGAACATATTGAAGAGAGCTCAATGATTATGGCCCCCGCATCGGTGATGTCTCGAAAGGAGGTTGTGAAGTTCTCCTCGATGCAAGTGGATGACAAAACTATACGTAAGTATAAACGTCGGGGTAAAACTTTGTGCTTTGATTCTAATCTGGACGATAATGTCCATGACAAAGTTGGCAAACCAGTGACGGGATTGGAGGAGACGAATGTGACTACTCCTGCAATGGAACTCGCAGCTGTGGAGATACAGCAAATGGCGATCGTCGACTCCTGCACCACCGCCGACCACTCTCCGTCCAAGAGAAGGAAAATCCTCACCTCTTCGCCTCCAGAGACAATGCTTCATCATCATCAGCTCGGCGATTCTTGCAGTTTCAAGCTCCTTCGTTCCACAAGTTCCTTCTCCGACGAGCGCTCTCCGCCTTCTTCCTCTTGCTGCTCCATAAATGAACTCAAATATGTCATTCTCGTCAGAGCGCCGCTTCTGGATCTGGAGGCTGACAGTTGTGAAACCGTCTACACTGCGCTGGTTCCATTCGCTTATGGATCTGGATCTGAATTCACTTCTTTCAATTCGTCAAAATCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.05

Weight (kDa)

5.88

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccI	GTMKAC	2 cut(s)	330, 582
AciI	CCGC	4 cut(s)	102, 345, 485, 545
AclWI	GGATC	3 cut(s)	561, 619, 625
AcsI	RAATTY	1 cut(s)	623
AfeI	AGCGCT	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	106, 254, 369
AgsI	TTSAA	3 cut(s)	77, 442, 637
AluBI	AGCT	4 cut(s)	84, 302, 421, 445
AluI	AGCT	4 cut(s)	84, 302, 421, 445
Alw21I	GWGCWC	2 cut(s)	63, 86
Alw26I	GTCTC	3 cut(s)	120, 260, 392
AlwI	GGATC	3 cut(s)	561, 619, 625
Aor51HI	AGCGCT	1 cut(s)	479
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	299, 501
ApoI	RAATTY	1 cut(s)	623
AspLEI	GCGC	3 cut(s)	480, 544, 592
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	121, 373
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	63, 86
BbvI	GCAGC	2 cut(s)	311, 488
BcoDI	GTCTC	3 cut(s)	120, 260, 392
BfoI	RGCGCY	2 cut(s)	481, 545
BisI	GCNGC	3 cut(s)	300, 502, 545
BlsI	GCNGC	3 cut(s)	301, 503, 546
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	99, 597
BmsI	GCATC	2 cut(s)	113, 135
BpmI	CTGGAG	2 cut(s)	378, 578
BsaAI	YACGTR	1 cut(s)	170
BsaBI	GATNNNNATC	2 cut(s)	210, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 254, 369
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	2 cut(s)	210, 616
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	2 cut(s)	210, 616
BseLI	CCNNNNNNNGG	3 cut(s)	106, 254, 369
BseMI	GCAATG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	130, 278
BseXI	GCAGC	2 cut(s)	311, 488
BsgI	GTGCAG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	63, 86
BslI	CCNNNNNNNGG	3 cut(s)	106, 254, 369
BsmAI	GTCTC	3 cut(s)	120, 260, 392
BsmBI	CGTCTC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	63, 86
Bsp143I	GATC	4 cut(s)	324, 553, 611, 617
BspACI	CCGC	4 cut(s)	102, 345, 485, 545
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	99, 597
BspPI	GGATC	3 cut(s)	561, 619, 625
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	4 cut(s)	324, 553, 611, 617
Bst4CI	ACNGT	3 cut(s)	21, 569, 580
Bst6I	CTCTTC	2 cut(s)	72, 391
BstBAI	YACGTR	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	2 cut(s)	481, 545
BstHHI	GCGC	3 cut(s)	480, 544, 592
BstKTI	GATC	4 cut(s)	327, 556, 614, 620
BstMAI	GTCTC	3 cut(s)	120, 260, 392
BstMBI	GATC	4 cut(s)	324, 553, 611, 617
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 484
BstSNI	TACGTA	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	311, 488
BstX2I	RGATCY	3 cut(s)	553, 611, 617
BstYI	RGATCY	3 cut(s)	553, 611, 617
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	255, 585
CfoI	GCGC	3 cut(s)	480, 544, 592
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	84, 98, 302, 421, 445, 563
CviKI_1	RGCY	6 cut(s)	84, 98, 302, 421, 445, 563
DpnI	GATC	4 cut(s)	326, 555, 613, 619
DpnII	GATC	4 cut(s)	324, 553, 611, 617
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	72, 391
EarI	CTCTTC	2 cut(s)	72, 391
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	84
Eco105I	TACGTA	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	1 cut(s)	233
FaiI	YATR	9 cut(s)	72, 95, 167, 177, 231, 509, 525, 609, 655
FatI	CATG	1 cut(s)	229
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	2 cut(s)	330, 582
Fnu4HI	GCNGC	3 cut(s)	300, 502, 545
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	300, 502, 545
GlaI	GCGC	3 cut(s)	479, 543, 591
GluI	GCNGC	3 cut(s)	300, 502, 545
GsuI	CTGGAG	2 cut(s)	378, 578
HaeII	RGCGCY	2 cut(s)	481, 545
HaeIII	GGCC	1 cut(s)	98
HhaI	GCGC	3 cut(s)	480, 544, 592
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	3 cut(s)	478, 542, 590
HinP1I	GCGC	3 cut(s)	478, 542, 590
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	206, 332, 428
HphI	GGTGA	2 cut(s)	121, 373
Hpy166II	GTNNAC	2 cut(s)	331, 583
Hpy188I	TCNGA	4 cut(s)	25, 472, 539, 622
Hpy188III	TCNNGA	6 cut(s)	117, 215, 395, 551, 557, 615
Hpy8I	GTNNAC	2 cut(s)	331, 583
Hpy99I	CGWCG	3 cut(s)	186, 332, 476
HpyAV	CCTTC	4 cut(s)	363, 458, 475, 498
HpyCH4III	ACNGT	3 cut(s)	21, 569, 580
HpyCH4IV	ACGT	2 cut(s)	169, 181
HpyCH4V	TGCA	4 cut(s)	148, 287, 339, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 484
HpySE526I	ACGT	2 cut(s)	169, 181
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	3 cut(s)	478, 542, 590
Kzo9I	GATC	4 cut(s)	324, 553, 611, 617
LmnI	GCTCC	3 cut(s)	66, 450, 509
Lsp1109I	GCAGC	2 cut(s)	311, 488
LweI	GCATC	2 cut(s)	113, 135
MaeII	ACGT	2 cut(s)	169, 181
MaeIII	GTNAC	2 cut(s)	250, 274
MalI	GATC	4 cut(s)	326, 555, 613, 619
MboI	GATC	4 cut(s)	324, 553, 611, 617
MboII	GAAGA	3 cut(s)	89, 378, 483
MflI	RGATCY	3 cut(s)	553, 611, 617
MhlI	GDGCHC	2 cut(s)	63, 86
MluCI	AATT	2 cut(s)	623, 637
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	118, 151, 256, 389, 394, 402, 505, 553
MspA1I	CMGCKG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	432, 484
NdeII	GATC	4 cut(s)	324, 553, 611, 617
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	99, 597
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	250, 274
PfeI	GAWTC	2 cut(s)	206, 428
PkrI	GCNGC	3 cut(s)	301, 503, 546
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	99, 597
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	3 cut(s)	553, 611, 617
PvuI	CGATCG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	329
SatI	GCNGC	3 cut(s)	300, 502, 545
Sau3AI	GATC	4 cut(s)	324, 553, 611, 617
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	63, 86
SetI	ASST	8 cut(s)	86, 129, 172, 184, 304, 386, 423, 447
SfaNI	GCATC	2 cut(s)	113, 135
SnaBI	TACGTA	1 cut(s)	170
Sse9I	AATT	2 cut(s)	623, 637
SsiI	CCGC	4 cut(s)	102, 345, 485, 545
SstI	GAGCTC	1 cut(s)	86
TaaI	ACNGT	3 cut(s)	21, 569, 580
TaiI	ACGT	2 cut(s)	172, 184
TaqI	TCGA	3 cut(s)	118, 143, 330
TasI	AATT	2 cut(s)	623, 637
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	2 cut(s)	206, 428
TscAI	CASTG	2 cut(s)	255, 592
TseFI	GTSAC	2 cut(s)	250, 274
TseI	GCWGC	2 cut(s)	299, 501
Tsp45I	GTSAC	2 cut(s)	250, 274
TspDTI	ATGAA	2 cut(s)	398, 528
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	255, 592
XapI	RAATTY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	330, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.