Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

54400699 .. 54411140

Gene Structure 10442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAAGAAAAAGCTCCAACAGCCATGGCTCTCTCTCAGGCAACGAGCTATGCTTGAAACTGTGGACTGCGTGTGGACTCTGAGGGCTGCTATGGAGAGCAATTTCACGTTGACAGGACTCAAAGATGCAGATAAGGAGGCTCTTGTTTATATTTTACCTCAGGATGTAAAGGGCCCTCAAACTGTTGCTTTCAATCTACCAAATGATGAGCGCATTGTAATAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGTGACCAAGTTCAAACATATTCTTCTGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTTCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAGTCTACAGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGGTTGAAGGTGAGGTTGAGAGCCTGAGTAAGGAGATACTTACTATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCTGAAACACTGGACAATGATAGACCCATTAAAATTTGCTTTGCAACGATTAGAAAAAGTTCAGGGACCGGTGGATATAATTCCCACTTCCCAGATTTCCGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

235

Amino Acids

26.46

Weight (kDa)

6.45

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	500, 632
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	59, 196, 277, 344, 521
AluBI	AGCT	5 cut(s)	16, 50, 299, 455, 473
AluI	AGCT	5 cut(s)	16, 50, 299, 455, 473
AoxI	GGCC	2 cut(s)	175, 484
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	89, 584
ApoI	RAATTY	2 cut(s)	500, 632
AsiGI	ACCGGT	1 cut(s)	667
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	4 cut(s)	175, 176, 392, 665
AsuHPI	GGTGA	3 cut(s)	16, 536, 584
AvaII	GGWCC	2 cut(s)	392, 665
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	2 cut(s)	179, 496
BanII	GRGCYC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	76, 571
BfmI	CTRYAG	2 cut(s)	294, 429
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	90, 585
BlsI	GCNGC	2 cut(s)	91, 586
Bme18I	GGWCC	2 cut(s)	392, 665
BmgT120I	GGNCC	4 cut(s)	175, 176, 392, 665
BmiI	GGNNCC	2 cut(s)	177, 666
BmsI	GCATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	667, 698
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	614
Bse21I	CCTNAGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	6 cut(s)	52, 74, 176, 276, 465, 530
BseNI	ACTGG	1 cut(s)	614
BseSI	GKGCMC	2 cut(s)	179, 496
BseXI	GCAGC	2 cut(s)	76, 571
BshFI	GGCC	2 cut(s)	177, 486
BshTI	ACCGGT	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	668, 699
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	177, 486
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	179, 496
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	2 cut(s)	177, 486
BspCNI	CTCAG	6 cut(s)	51, 75, 175, 275, 464, 531
BspLI	GGNNCC	2 cut(s)	177, 666
BspTI	CTTAAG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	64, 187
BstAFI	CTTAAG	1 cut(s)	251
BstDEI	CTNAG	6 cut(s)	38, 83, 162, 262, 451, 539
BstDSI	CCRYGG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSFI	CTRYAG	2 cut(s)	294, 429
BstSLI	GKGCMC	2 cut(s)	179, 496
BstV1I	GCAGC	2 cut(s)	76, 571
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	177, 486
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	270, 494, 607
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	4 cut(s)	175, 176, 392, 665
CspAI	ACCGGT	1 cut(s)	667
CviAII	CATG	4 cut(s)	27, 247, 371, 383
DdeI	CTNAG	6 cut(s)	38, 83, 162, 262, 451, 539
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	392, 665
Eco81I	CCTNAGG	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoO109I	RGGNCCY	2 cut(s)	175, 176
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	4 cut(s)	30, 250, 374, 386
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	4 cut(s)	26, 246, 370, 382
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	90, 585
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	90, 585
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	90, 585
HaeIII	GGCC	2 cut(s)	177, 486
HapII	CCGG	2 cut(s)	668, 699
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	30, 250, 374, 386
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	3 cut(s)	79, 120, 344
HpaII	CCGG	2 cut(s)	668, 699
HphI	GGTGA	3 cut(s)	16, 536, 584
Hpy166II	GTNNAC	4 cut(s)	67, 78, 114, 429
Hpy188I	TCNGA	2 cut(s)	84, 603
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	4 cut(s)	67, 78, 114, 429
HpyAV	CCTTC	2 cut(s)	358, 515
HpyCH4III	ACNGT	2 cut(s)	64, 187
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	131, 439, 587, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	6 cut(s)	38, 83, 162, 262, 451, 539
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	30, 250, 374, 386
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	8 cut(s)	25, 102, 149, 551, 595, 647, 681, 704
Lsp1109I	GCAGC	2 cut(s)	76, 571
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	265, 572
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	5 cut(s)	19, 278, 343, 473, 590
MhlI	GDGCHC	2 cut(s)	179, 496
MluCI	AATT	6 cut(s)	103, 363, 500, 590, 632, 678
MlyI	GAGTC	2 cut(s)	73, 114
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	78, 133, 171, 189, 224, 405, 520, 574
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	2 cut(s)	252, 629
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	668, 699
Mva1269I	GAATGC	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	30, 250, 374, 386
NlaIV	GGNNCC	2 cut(s)	177, 666
NmuCI	GTSAC	2 cut(s)	265, 572
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	667
PkrI	GCNGC	2 cut(s)	91, 586
PleI	GAGTC	2 cut(s)	73, 114
PpsI	GAGTC	2 cut(s)	73, 114
PspN4I	GGNNCC	2 cut(s)	177, 666
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	4 cut(s)	175, 176, 392, 665
SaqAI	TTAA	2 cut(s)	252, 629
SatI	GCNGC	2 cut(s)	90, 585
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	4 cut(s)	175, 176, 392, 665
SchI	GAGTC	2 cut(s)	73, 114
SduI	GDGCHC	2 cut(s)	179, 496
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	2 cut(s)	294, 429
SinI	GGWCC	2 cut(s)	392, 665
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	6 cut(s)	103, 363, 500, 590, 632, 678
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	64, 187
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	229
TasI	AATT	6 cut(s)	103, 363, 500, 590, 632, 678
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	252, 629
Tru9I	TTAA	2 cut(s)	252, 629
TscAI	CASTG	3 cut(s)	270, 501, 614
TseFI	GTSAC	2 cut(s)	265, 572
TseI	GCWGC	2 cut(s)	89, 584
Tsp45I	GTSAC	2 cut(s)	265, 572
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	270, 501, 614
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	392, 665
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	500, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.