Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

44638035 .. 44641401

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1188200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGTTGGACTCTAAGCTGGATGTTACTATTGGGCCATATGAAACATATGAAGATGCTCTTTTTGGATACAAGGATGTCAAGGGTCCTCAAACTGCTGCATTTAATCTACCAAATGACGAGCGTATAGTAAAAGATCGAGGAACATCAATGGTCATGCTTAAGAATATCTCAGAGGCTAAGCTCAAGCACATTCTTCAGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAGGAACTTGTAGATTTTGAATCTTTCTTCACTCACACAATTTGCCATGAGTGCTGCCATGGGATTAGACCTCATAGCATAACACTTCCAGATGGTAGAAAGTCAACAGTGAGATTGGACTTACTTTCAAAGAGTTTATTGAAGTCTATGTATGTTTCTTTTCTTGCTGGATGCTTCCGCTCAGTACGGTTTGGTCTTGAAGAAGCTCATGGAAAAGGACAAGCTTTGCAATTTAATTGGTTGTATGTGCAAGGAGCCTTATTAAATCTCTGTCACGAGATGACTTTTTTTTTTTATTTCCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

181

Amino Acids

20.56

Weight (kDa)

6.15

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	414
AciI	CCGC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	254, 363, 376, 434
AluBI	AGCT	5 cut(s)	19, 184, 209, 440, 458
AluI	AGCT	5 cut(s)	19, 184, 209, 440, 458
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	98, 288
AspS9I	GGNCC	2 cut(s)	35, 86
AvaII	GGWCC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	85, 275
BccI	CCATC	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	99, 289
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	100, 290
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	35, 86
BmiI	GGNNCC	2 cut(s)	87, 490
BmsI	GCATC	2 cut(s)	46, 395
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	3 cut(s)	28, 82, 410
BseMII	CTCAG	2 cut(s)	186, 429
BseXI	GCAGC	2 cut(s)	85, 275
BshFI	GGCC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	136
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	185, 428
BspLI	GGNNCC	2 cut(s)	87, 490
BspTI	CTTAAG	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	343, 423
BstAFI	CTTAAG	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	15, 172, 180, 415
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	28, 82, 410
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	85, 275
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	28, 82, 410
BtsIMutI	CAGTG	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	35, 86
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	4 cut(s)	157, 281, 293, 443
CviJI	RGCY	9 cut(s)	19, 37, 179, 184, 202, 209, 440, 458, 491
CviKI_1	RGCY	9 cut(s)	19, 37, 179, 184, 202, 209, 440, 458, 491
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	4 cut(s)	15, 172, 180, 415
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	4 cut(s)	160, 284, 296, 446
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	4 cut(s)	156, 280, 292, 442
FauNDI	CATATG	2 cut(s)	40, 49
Fnu4HI	GCNGC	2 cut(s)	99, 289
FokI	GGATG	3 cut(s)	35, 89, 417
Fsp4HI	GCNGC	2 cut(s)	99, 289
GluI	GCNGC	2 cut(s)	99, 289
HaeIII	GGCC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	160, 284, 296, 446
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	2 cut(s)	11, 254
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	323, 431, 509
Hpy8I	GTNNAC	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	343, 423
HpyCH4V	TGCA	3 cut(s)	101, 463, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	4 cut(s)	15, 172, 180, 415
Hsp92II	CATG	4 cut(s)	160, 284, 296, 446
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	4 cut(s)	5, 221, 336, 387
Lsp1109I	GCAGC	2 cut(s)	85, 275
LweI	GCATC	2 cut(s)	46, 395
MaeIII	GTNAC	2 cut(s)	25, 506
MalI	GATC	1 cut(s)	138
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	1 cut(s)	136
MboII	GAAGA	4 cut(s)	65, 188, 253, 446
MluCI	AATT	4 cut(s)	273, 464, 469, 538
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	4 cut(s)	99, 134, 169, 315
MseI	TTAA	5 cut(s)	105, 162, 468, 497, 537
MspCI	CTTAAG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	292
NdeI	CATATG	2 cut(s)	40, 49
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	160, 284, 296, 446
NlaIV	GGNNCC	2 cut(s)	87, 490
NmuCI	GTSAC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	100, 290
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	87, 490
PspPI	GGNCC	2 cut(s)	35, 86
PspPPI	RGGWCCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	5 cut(s)	105, 162, 468, 497, 537
SatI	GCNGC	2 cut(s)	99, 289
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	35, 86
SchI	GAGTC	1 cut(s)	5
SetI	ASST	6 cut(s)	21, 186, 211, 307, 442, 460
SfaNI	GCATC	2 cut(s)	46, 395
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	161, 185
SmoI	CTYRAG	2 cut(s)	161, 185
Sse9I	AATT	4 cut(s)	273, 464, 469, 538
SsiI	CCGC	1 cut(s)	412
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	343, 423
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	273, 464, 469, 538
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	5 cut(s)	105, 162, 468, 497, 537
Tru9I	TTAA	5 cut(s)	105, 162, 468, 497, 537
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	98, 288
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	57, 66
TspRI	CASTG	1 cut(s)	348
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.