RLG00000008571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011603
Physical Location & Seq
Forward (+)
32313937 .. 32314515
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008571

Sequence Viewer

Length: 378 bp
ATGGATACTCTCATGACTTTGGAGAAAGCACGGTCTGACATTAGAGATGTGGGGTCCGGGCAACTTCCTGTACTCCAAGAACAGATTGAAGAGAGCTCAATGATTATGGCCCCCGCATCGGTGATGTCTCGAAAGGAAGTTGTGAAGTTCTCCTCGATGCAAGTGGTGTCAGTGGGGAGGAAAAGGAAGGCTGTTCCCAAGTTCGATCGGTTCGGGAAAAAGTACTTGGCTTTTCCCGAATCGATACTTGAGGACAAAGTTGGCAAACCAGTGACGGGATTGGAGGAGACGAATGTGACTACTCCTGCAATGGAACTCGCAGCTGTGGAGATACAGGTGGAATGTGAGCGCTCACATTCTACCACTGTTTTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.83

Weight (kDa)

5.89

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AfaI GTAC 2 cut(s) 72, 224
AfeI AGCGCT 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 118, 275
AgsI TTSAA 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 96, 323
AluI AGCT 2 cut(s) 96, 323
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 2 cut(s) 132, 281
Aor51HI AGCGCT 1 cut(s) 350
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 54, 109
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 332
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 132, 281
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 109
BmiI GGNNCC 2 cut(s) 55, 111
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 125, 147
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 275
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 118, 275
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 142, 299
BseXI GCAGC 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 118, 275
BsmAI GTCTC 2 cut(s) 132, 281
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 110
BspDI ATCGAT 1 cut(s) 242
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 55, 111
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 269
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 33, 367
Bst6I CTCTTC 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 2 cut(s) 132, 281
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 332
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 242
BtsIMutI CAGTG 3 cut(s) 177, 276, 363
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 54, 109
ClaI ATCGAT 1 cut(s) 242
Csp6I GTAC 2 cut(s) 71, 223
CviAII CATG 1 cut(s) 13
CviJI RGCY 5 cut(s) 96, 110, 191, 230, 323
CviKI_1 RGCY 5 cut(s) 96, 110, 191, 230, 323
CviQI GTAC 2 cut(s) 71, 223
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 107
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 4 cut(s) 13, 129, 214, 236
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 33, 367
HpyCH4V TGCA 2 cut(s) 160, 308
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 70, 81, 282, 318, 320
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 2 cut(s) 125, 147
MaeIII GTNAC 2 cut(s) 271, 295
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 98
MnlI CCTC 4 cut(s) 163, 171, 244, 277
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 55, 111
NmuCI GTSAC 2 cut(s) 271, 295
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 322
Ple19I CGATCG 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 55, 111
PspPI GGNCC 2 cut(s) 54, 109
PvuI CGATCG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 72, 224
RsaNI GTAC 2 cut(s) 71, 223
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 54, 109
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 98, 325, 339
SfaNI GCATC 2 cut(s) 125, 147
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 1 cut(s) 114
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 33, 367
TaqI TCGA 4 cut(s) 130, 155, 204, 242
TatI WGTACW 2 cut(s) 70, 222
TfiI GAWTC 1 cut(s) 239
TscAI CASTG 3 cut(s) 177, 276, 370
TseFI GTSAC 2 cut(s) 271, 295
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 271, 295
TspRI CASTG 3 cut(s) 177, 276, 370
VpaK11BI GGWCC 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.