Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003058.1

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

34004 .. 34753

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003058.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggctggaggcatgaatagggatcacgaggtgattgtcaattcagattcgacgctggtttccttgggggacgcgagagctgctgcgttccaggacggcttctggtatatggctggtaggctgctggcaccaaaagtcaagttcccgggtttcaaagggaccattgccactatttggcgtgtcagatcgggtctcactatacaagatgccggagagcgttttgtttttcagttcgacagtgaagcggtgcgtaatagcatcttgcatgggggtccttggttctaccacaataccatgtctcggaaggaggttgtgaagttctcctcgatgcaagtggtgccactggggaggaaaaggaaggctgttcccaagttagatcggttcgggaaaaagtacttggcttttcctgattcgatacttgaggttgaagataacgtctcgctggtgctgcaacaaaagcatggcaagatatgggtctcgcctaagaaaaagaaagttgggcatcccaagggaagtaagaatagagtgaagtctgctgtggaacaggatgacaaaactatacgtaagtataaacgtcggggtaaagctttgtgctttgactctaatctggaagataatgtccatgtcaaagttggcaaaccagtgacggtgttggaggagacgaatgtgactactcctgcattggaacttgcagctgtggaggtaccggtggaatgtgagagctcacattctaccactattttagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

249

Amino Acids

27.79

Weight (kDa)

9.74

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	703
AccB1I	GGYRCC	3 cut(s)	127, 337, 703
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	395, 705
AfiI	CCNNNNNNNGG	2 cut(s)	174, 300
AgeI	ACCGGT	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	154, 428
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	80, 587, 695, 723
AluI	AGCT	4 cut(s)	80, 587, 695, 723
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	5 cut(s)	197, 303, 442, 481, 653
AlwI	GGATC	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	145
ApeKI	GCWGC	5 cut(s)	80, 83, 121, 448, 692
AsiGI	ACCGGT	1 cut(s)	706
Asp718I	GGTACC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	159, 272
AsuC2I	CCSGG	2 cut(s)	146, 147
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	159, 272
BanI	GGYRCC	3 cut(s)	127, 337, 703
BanII	GRGCYC	1 cut(s)	725
BauI	CACGAG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	5 cut(s)	67, 70, 108, 435, 704
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	2 cut(s)	146, 147
BcoDI	GTCTC	5 cut(s)	197, 303, 442, 481, 653
BisI	GCNGC	5 cut(s)	81, 84, 122, 449, 693
BlsI	GCNGC	5 cut(s)	82, 85, 123, 450, 694
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	92, 146, 147
Bme18I	GGWCC	2 cut(s)	159, 272
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	159, 272
BmiI	GGNNCC	5 cut(s)	129, 160, 273, 339, 705
BmrFI	CCNGG	3 cut(s)	92, 146, 147
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	4 cut(s)	196, 267, 318, 511
BmuI	ACTGGG	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	146, 147
BsaAI	YACGTR	1 cut(s)	563
BsaI	GGTCTC	2 cut(s)	197, 481
BsaJI	CCNNGG	4 cut(s)	63, 145, 275, 507
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 300
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	348, 641
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	4 cut(s)	63, 145, 275, 507
BseGI	GGATG	2 cut(s)	502, 553
BseLI	CCNNNNNNNGG	2 cut(s)	174, 300
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	348, 641
BseRI	GAGGAG	2 cut(s)	313, 671
BseXI	GCAGC	5 cut(s)	67, 70, 108, 435, 704
Bsh1236I	CGCG	1 cut(s)	74
BshNI	GGYRCC	3 cut(s)	127, 337, 703
BshTI	ACCGGT	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	146, 210, 707
BslFI	GGGAC	2 cut(s)	83, 172
BslI	CCNNNNNNNGG	2 cut(s)	174, 300
BsmAI	GTCTC	5 cut(s)	197, 303, 442, 481, 653
BsmBI	CGTCTC	2 cut(s)	442, 653
BsmFI	GGGAC	2 cut(s)	83, 172
Bso31I	GGTCTC	2 cut(s)	197, 481
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	725
Bsp143I	GATC	3 cut(s)	22, 185, 376
BspACI	CCGC	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	5 cut(s)	129, 160, 273, 339, 705
BspPI	GGATC	1 cut(s)	30
BspT107I	GGYRCC	3 cut(s)	127, 337, 703
BspTNI	GGTCTC	2 cut(s)	197, 481
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	348, 641
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	4 cut(s)	63, 145, 275, 507
BssMI	GATC	3 cut(s)	22, 185, 376
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	3 cut(s)	63, 275, 507
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	239, 649
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	502, 553
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	25, 188, 379
BstMAI	GTCTC	5 cut(s)	197, 303, 442, 481, 653
BstMBI	GATC	3 cut(s)	22, 185, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 337, 448, 457
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	90, 144, 145
BstSNI	TACGTA	1 cut(s)	563
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	5 cut(s)	67, 70, 108, 435, 704
BtsCI	GGATG	2 cut(s)	502, 553
BtsIMutI	CAGTG	3 cut(s)	244, 341, 648
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	159, 272
Cfr9I	CCCGGG	1 cut(s)	145
CseI	GACGC	2 cut(s)	61, 80
Csp6I	GTAC	2 cut(s)	394, 704
CspAI	ACCGGT	1 cut(s)	706
CviAII	CATG	5 cut(s)	13, 266, 295, 461, 623
CviQI	GTAC	2 cut(s)	394, 704
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	24, 187, 378
DpnII	GATC	3 cut(s)	22, 185, 376
DraIII	CACNNNGTG	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	723
Eco105I	TACGTA	1 cut(s)	563
Eco130I	CCWWGG	3 cut(s)	63, 275, 507
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	2 cut(s)	197, 481
Eco47I	GGWCC	2 cut(s)	159, 272
Eco53kI	GAGCTC	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	63, 275, 507
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	3 cut(s)	63, 275, 507
Esp3I	CGTCTC	2 cut(s)	442, 653
FaeI	CATG	5 cut(s)	16, 269, 298, 464, 626
FaqI	GGGAC	2 cut(s)	83, 172
FatI	CATG	5 cut(s)	12, 265, 294, 460, 622
Fnu4HI	GCNGC	5 cut(s)	81, 84, 122, 449, 693
FokI	GGATG	2 cut(s)	489, 560
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	5 cut(s)	81, 84, 122, 449, 693
GluI	GCNGC	5 cut(s)	81, 84, 122, 449, 693
GsuI	CTGGAG	1 cut(s)	27
HapII	CCGG	3 cut(s)	146, 210, 707
HgaI	GACGC	2 cut(s)	61, 80
Hin1II	CATG	5 cut(s)	16, 269, 298, 464, 626
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	3 cut(s)	47, 410, 599
HpaII	CCGG	3 cut(s)	146, 210, 707
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	46, 185, 303
Hpy188III	TCNNGA	4 cut(s)	26, 385, 407, 608
Hpy99I	CGWCG	2 cut(s)	55, 579
HpyAV	CCTTC	2 cut(s)	298, 352
HpyCH4III	ACNGT	2 cut(s)	239, 649
HpyCH4IV	ACGT	3 cut(s)	435, 562, 574
HpyCH4V	TGCA	5 cut(s)	265, 331, 451, 680, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 337, 448, 457
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	3 cut(s)	435, 562, 574
Hsp92II	CATG	5 cut(s)	16, 269, 298, 464, 626
KpnI	GGTACC	1 cut(s)	707
Kzo9I	GATC	3 cut(s)	22, 185, 376
Lsp1109I	GCAGC	5 cut(s)	67, 70, 108, 435, 704
LweI	GCATC	4 cut(s)	196, 267, 318, 511
MaeII	ACGT	3 cut(s)	435, 562, 574
MaeIII	GTNAC	2 cut(s)	643, 667
MalI	GATC	3 cut(s)	24, 187, 378
MboI	GATC	3 cut(s)	22, 185, 376
MboII	GAAGA	2 cut(s)	440, 623
MhlI	GDGCHC	1 cut(s)	725
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	7 cut(s)	22, 301, 334, 342, 415, 649, 694
MseI	TTAA	1 cut(s)	748
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	3 cut(s)	146, 210, 707
MspR9I	CCNGG	3 cut(s)	92, 146, 147
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	80, 337, 448, 457
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	3 cut(s)	22, 185, 376
NlaIII	CATG	5 cut(s)	16, 269, 298, 464, 626
NlaIV	GGNNCC	5 cut(s)	129, 160, 273, 339, 705
NmuCI	GTSAC	2 cut(s)	643, 667
PfeI	GAWTC	2 cut(s)	47, 410
PflMI	CCANNNNNTGG	1 cut(s)	174
PfoI	TCCNGGA	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	706
PkrI	GCNGC	5 cut(s)	82, 85, 123, 450, 694
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Ppu21I	YACGTR	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	5 cut(s)	129, 160, 273, 339, 705
PspPI	GGNCC	2 cut(s)	159, 272
PspPPI	RGGWCCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	2 cut(s)	395, 705
RsaNI	GTAC	2 cut(s)	394, 704
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	5 cut(s)	81, 84, 122, 449, 693
Sau3AI	GATC	3 cut(s)	22, 185, 376
Sau96I	GGNCC	2 cut(s)	159, 272
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	92, 146, 147
SduI	GDGCHC	1 cut(s)	725
SfaNI	GCATC	4 cut(s)	196, 267, 318, 511
SinI	GGWCC	2 cut(s)	159, 272
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SnaBI	TACGTA	1 cut(s)	563
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	725
StyD4I	CCNGG	3 cut(s)	90, 144, 145
StyI	CCWWGG	3 cut(s)	63, 275, 507
TaaI	ACNGT	2 cut(s)	239, 649
TaiI	ACGT	3 cut(s)	438, 565, 577
TaqI	TCGA	4 cut(s)	50, 234, 326, 413
TasI	AATT	1 cut(s)	40
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	47, 410
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TscAI	CASTG	3 cut(s)	244, 348, 648
TseFI	GTSAC	2 cut(s)	643, 667
TseI	GCWGC	5 cut(s)	80, 83, 121, 448, 692
Tsp45I	GTSAC	2 cut(s)	643, 667
TspDTI	ATGAA	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	3 cut(s)	244, 348, 648
Van91I	CCANNNNNTGG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	159, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmaI	CCCGGG	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.