Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

50137460 .. 50147196

Gene Structure 9737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTTGGGATACTCCCCCTCACCCCGTTGACAGGACTCAAAGATGCAGATAAGGAGGCTCTTGTTTATATTTTACCTCAGGATGTAAAGGGCCCTCAAACTGTTGCTTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGTGACCAAGTTCAAACATATTCTTCCGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTTCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAGTCTACAGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGGTGAGTACTGAGAACTGCTCCCGAAGAGCTTATAGAAATGCATGTATGCTTCTTTTCTTGCTGGATGCTTCCACTCAGTTTGTTTCGGTCTTGAGGAAGCTCATGGTTAAGCTAGCTATTCATCCTTCCCCATCTGTTTTTGTATGCACATTATTTTACCTACTTACTTTCATTGATTTGCTTCAAGAATCTCATATACACGTGCTATATATTCTCAGAAAAGGACAAGCATTGCAGTTTAACTGGTTGTACAAGCAAGGAGCCTTTATTTTGAATCCTGATGAAACATTCTCTGTTGACTTTGATAAGGTTGAAGGTGAGGTTGAGAGCCTGAGTAAGGAGATACTTACCATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCTGAAACACTGGACAATGATAGACCCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

285

Amino Acids

32.34

Weight (kDa)

6.46

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	416
AcvI	CACGTG	1 cut(s)	634
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	439, 683
AfiI	CCNNNNNNNGG	2 cut(s)	32, 769
AflII	CTTAAG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	6 cut(s)	112, 193, 260, 617, 706, 746
AluBI	AGCT	7 cut(s)	215, 371, 389, 461, 532, 544, 548
AluI	AGCT	7 cut(s)	215, 371, 389, 461, 532, 544, 548
AoxI	GGCC	2 cut(s)	91, 400
ApaI	GGGCCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	91, 92, 308
AsuHPI	GGTGA	4 cut(s)	13, 445, 761, 809
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	78
BaeGI	GKGCMC	2 cut(s)	95, 412
BanII	GRGCYC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	3
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	210, 345
BfrI	CTTAAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	3
BisI	GCNGC	1 cut(s)	810
BlsI	GCNGC	1 cut(s)	811
BmcAI	AGTACT	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	3 cut(s)	91, 92, 308
BmiI	GGNNCC	2 cut(s)	93, 694
BmsI	GCATC	2 cut(s)	34, 487
BmtI	GCTAGC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpuEI	CTTGAG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 769
Bse1I	ACTGG	2 cut(s)	680, 839
Bse21I	CCTNAGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	662
BseGI	GGATG	3 cut(s)	88, 502, 553
BseLI	CCNNNNNNNGG	2 cut(s)	32, 769
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	7 cut(s)	92, 192, 381, 432, 521, 661, 755
BseNI	ACTGG	2 cut(s)	680, 839
BseSI	GKGCMC	2 cut(s)	95, 412
BseXI	GCAGC	1 cut(s)	796
BshFI	GGCC	2 cut(s)	93, 402
BslI	CCNNNNNNNGG	2 cut(s)	32, 769
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	93, 402
Bsp120I	GGGCCC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	95, 412
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	93, 402
BspCNI	CTCAG	7 cut(s)	91, 191, 380, 433, 520, 660, 756
BspLI	GGNNCC	2 cut(s)	93, 694
BspOI	GCTAGC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	451
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	680, 839
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	451
BstAFI	CTTAAG	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	7 cut(s)	78, 178, 367, 441, 507, 647, 764
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	3 cut(s)	88, 502, 553
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	477
BstSFI	CTRYAG	2 cut(s)	210, 345
BstSLI	GKGCMC	2 cut(s)	95, 412
BstV1I	GCAGC	1 cut(s)	796
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	2 cut(s)	93, 402
BtsCI	GGATG	3 cut(s)	88, 502, 553
BtsIMutI	CAGTG	3 cut(s)	186, 410, 832
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	91, 92, 308
Csp6I	GTAC	2 cut(s)	438, 682
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	5 cut(s)	163, 287, 299, 474, 535
CviQI	GTAC	2 cut(s)	438, 682
DdeI	CTNAG	7 cut(s)	78, 178, 367, 441, 507, 647, 764
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	308
Eco72I	CACGTG	1 cut(s)	634
Eco81I	CCTNAGG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoO109I	RGGNCCY	2 cut(s)	91, 92
EcoT22I	ATGCAT	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	5 cut(s)	166, 290, 302, 477, 538
FatI	CATG	5 cut(s)	162, 286, 298, 473, 534
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	810
FokI	GGATG	3 cut(s)	95, 509, 540
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	810
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	93, 402
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	166, 290, 302, 477, 538
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	2 cut(s)	30, 730
HindII	GTYRAC	2 cut(s)	30, 730
HinfI	GANTC	4 cut(s)	36, 260, 620, 706
HphI	GGTGA	4 cut(s)	13, 445, 761, 809
Hpy166II	GTNNAC	3 cut(s)	30, 345, 730
Hpy188I	TCNGA	2 cut(s)	650, 828
Hpy188III	TCNNGA	5 cut(s)	80, 453, 523, 617, 710
Hpy8I	GTNNAC	3 cut(s)	30, 345, 730
HpyAV	CCTTC	3 cut(s)	274, 567, 740
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	6 cut(s)	47, 355, 473, 579, 667, 812
HpyF3I	CTNAG	7 cut(s)	78, 178, 367, 441, 507, 647, 764
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	5 cut(s)	166, 290, 302, 477, 538
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	2 cut(s)	455, 692
LpnPI	CCDG	7 cut(s)	18, 65, 479, 661, 723, 776, 820
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	2 cut(s)	34, 487
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	181, 797
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	5 cut(s)	194, 259, 389, 468, 815
MhlI	GDGCHC	2 cut(s)	95, 412
MluCI	AATT	3 cut(s)	279, 416, 815
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	29, 49, 87, 105, 140, 321, 519, 745, 799
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	4 cut(s)	168, 540, 672, 856
MspCI	CTTAAG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	5 cut(s)	166, 290, 302, 477, 538
NlaIV	GGNNCC	2 cut(s)	93, 694
NmuCI	GTSAC	2 cut(s)	181, 797
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	451
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	260, 620, 706
PkrI	GCNGC	1 cut(s)	811
PleI	GAGTC	1 cut(s)	30
PmaCI	CACGTG	1 cut(s)	634
PmlI	CACGTG	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	634
PspCI	CACGTG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	93, 694
PspOMI	GGGCCC	1 cut(s)	91
PspPI	GGNCC	3 cut(s)	91, 92, 308
RsaI	GTAC	2 cut(s)	439, 683
RsaNI	GTAC	2 cut(s)	438, 682
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	4 cut(s)	168, 540, 672, 856
SatI	GCNGC	1 cut(s)	810
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	91, 92, 308
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	95, 412
SfaNI	GCATC	2 cut(s)	34, 487
SfcI	CTRYAG	2 cut(s)	210, 345
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	167, 523
SmoI	CTYRAG	2 cut(s)	167, 523
Sse9I	AATT	3 cut(s)	279, 416, 815
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	145
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	3 cut(s)	279, 416, 815
TatI	WGTACW	2 cut(s)	437, 681
TfiI	GAWTC	3 cut(s)	260, 620, 706
Tru1I	TTAA	4 cut(s)	168, 540, 672, 856
Tru9I	TTAA	4 cut(s)	168, 540, 672, 856
TscAI	CASTG	3 cut(s)	186, 417, 839
TseFI	GTSAC	2 cut(s)	181, 797
TseI	GCWGC	1 cut(s)	809
Tsp45I	GTSAC	2 cut(s)	181, 797
TspDTI	ATGAA	4 cut(s)	303, 542, 592, 729
TspRI	CASTG	3 cut(s)	186, 417, 839
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.