Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

48755951 .. 48760811

Gene Structure 4861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGACTTTGGAGAAAGCACGGTCCGACATTAGAGATGTGGGGTCCGGGAAACTTCCTGTACTCCAAGAACAGATTGAAGAGAGCTCAATGATTATGGCCCCCGCATCGGTGATGTCTCGAAATGAGGTTATGAAGTTCTCCTCGATGCAAGTGGTGCCAGTAGGGAGGAAAAGGAAGGCTGTTCCCAAGTTCGATCGGTTTGGGAAAAAATACTTGGCTTTTCCCGAATCGATACTTGAGGACAAAGCTGGCAAACCAGTGACGGGATTGGAGGAGACGAATGTGACTACTCCTGCAATGGAACTCGCAGCTGTGGAGATACAGTTGACAGGACTCACAGATGCAGATAAGGAAGCTCTTGTTTATATTTCACCTCAGGATGTAAAGGGCCCTCAAACTGTTCCTTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCGTGCTTAAGAATATCTCAGTGGCCAAGTTCAAACATATTCTTCTGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAAAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTGCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAGTCTAAAGAACTGCAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCAAATCCACAAGGTGAGTAGTGATGCTTCCGCTCAGTTCGTTTTGGTCTTGAGGAAGCTCATGGGTAAGCTAGCTATTCATCCTTCCCCATCTGTTTTCTTAAGCACATTATTTTACCTACTTACTTTCCATGATTTAAAAGGACAAGCATTGCAGTTTAACTGGCTGTACAAGCAAGGAGCCTTTATTTTGAATCCTGATGAAACTTCTGTTGACTTTGATAAGGTTGAAGTTGCAGTTGAGAGCCTGAGTAGGGAGATACTTACCATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCAGAACTGCACAATGACAGACCCATTGAAAGTTGCTTTGCAACGATTAGAAAAAGTTCAGGTACCGGTGGATATAGTTCCCAGATTTCCGGTGGCTGAGAATAAATTGATTCAAAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

383

Amino Acids

42.58

Weight (kDa)

7.15

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1087
AccB1I	GGYRCC	2 cut(s)	154, 1087
AccBSI	CCGCTC	1 cut(s)	749
AciI	CCGC	2 cut(s)	102, 747
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	1010
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	3 cut(s)	60, 887, 1089
AfiI	CCNNNNNNNGG	3 cut(s)	106, 263, 970
AflII	CTTAAG	2 cut(s)	464, 817
AgeI	ACCGGT	1 cut(s)	1090
AgsI	TTSAA	8 cut(s)	77, 409, 490, 557, 910, 947, 1054, 1139
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	120, 269
AoxI	GGCC	4 cut(s)	96, 388, 480, 697
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	308, 1010
ApoI	RAATTY	1 cut(s)	713
AsiGI	ACCGGT	1 cut(s)	1090
Asp700I	GAANNNNTTC	1 cut(s)	1080
Asp718I	GGTACC	1 cut(s)	1087
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	6 cut(s)	21, 42, 97, 388, 389, 605
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	4 cut(s)	121, 363, 742, 1010
AsuNHI	GCTAGC	1 cut(s)	787
AvaII	GGWCC	3 cut(s)	21, 42, 605
AxyI	CCTNAGG	1 cut(s)	375
BaeGI	GKGCMC	2 cut(s)	392, 709
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	154, 1087
BanII	GRGCYC	2 cut(s)	86, 392
BarI	GAAGNNNNNNTAC	2 cut(s)	727, 759
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	320, 997
BccI	CCATC	1 cut(s)	814
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	120, 269
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	1 cut(s)	507
BfrI	CTTAAG	2 cut(s)	464, 817
BisI	GCNGC	2 cut(s)	309, 1011
BlsI	GCNGC	2 cut(s)	310, 1012
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	3 cut(s)	21, 42, 605
BmgT120I	GGNCC	6 cut(s)	21, 42, 97, 388, 389, 605
BmiI	GGNNCC	6 cut(s)	43, 99, 156, 390, 898, 1089
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	4 cut(s)	113, 135, 331, 730
BmtI	GCTAGC	1 cut(s)	791
BpuEI	CTTGAG	2 cut(s)	257, 787
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	230
BsaWI	WCCGGW	2 cut(s)	1090, 1114
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 263, 970
Bse118I	RCCGGY	1 cut(s)	1090
Bse1I	ACTGG	3 cut(s)	158, 257, 884
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	303, 866
BseCI	ATCGAT	1 cut(s)	230
BseGI	GGATG	2 cut(s)	385, 796
BseLI	CCNNNNNNNGG	3 cut(s)	106, 263, 970
BseMI	GCAATG	2 cut(s)	303, 866
BseMII	CTCAG	6 cut(s)	389, 489, 678, 764, 956, 1113
BseNI	ACTGG	3 cut(s)	158, 257, 884
BseRI	GAGGAG	2 cut(s)	130, 287
BseSI	GKGCMC	2 cut(s)	392, 709
BseXI	GCAGC	2 cut(s)	320, 997
BsgI	GTGCAG	1 cut(s)	1018
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	98, 390, 482, 699
BshNI	GGYRCC	2 cut(s)	154, 1087
BshTI	ACCGGT	1 cut(s)	1090
BshVI	ATCGAT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	45, 1091, 1115
BslI	CCNNNNNNNGG	3 cut(s)	106, 263, 970
BsmAI	GTCTC	2 cut(s)	120, 269
BsmBI	CGTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	4 cut(s)	98, 390, 482, 699
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	86, 392, 709
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	193, 439
BspACI	CCGC	2 cut(s)	102, 747
BspANI	GGCC	4 cut(s)	98, 390, 482, 699
BspCNI	CTCAG	6 cut(s)	388, 488, 677, 763, 957, 1114
BspDI	ATCGAT	1 cut(s)	230
BspLI	GGNNCC	6 cut(s)	43, 99, 156, 390, 898, 1089
BspOI	GCTAGC	1 cut(s)	791
BspT107I	GGYRCC	2 cut(s)	154, 1087
BspTI	CTTAAG	2 cut(s)	464, 817
BsrBI	CCGCTC	1 cut(s)	749
BsrDI	GCAATG	2 cut(s)	303, 866
BsrFI	RCCGGY	1 cut(s)	1090
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	158, 257, 884
BssAI	RCCGGY	1 cut(s)	1090
BssMI	GATC	2 cut(s)	193, 439
Bst4CI	ACNGT	3 cut(s)	21, 324, 400
Bst6I	CTCTTC	1 cut(s)	72
BstAFI	CTTAAG	2 cut(s)	464, 817
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	885
BstC8I	GCNNGC	2 cut(s)	250, 789
BstDEI	CTNAG	6 cut(s)	375, 475, 664, 750, 965, 1122
BstF5I	GGATG	2 cut(s)	385, 796
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	196, 442
BstMAI	GTCTC	2 cut(s)	120, 269
BstMBI	GATC	2 cut(s)	193, 439
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 588, 889
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	2 cut(s)	392, 709
BstV1I	GCAGC	2 cut(s)	320, 997
Bsu15I	ATCGAT	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	98, 390, 482, 699
BsuTUI	ATCGAT	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	385, 796
BtsIMutI	CAGTG	3 cut(s)	264, 483, 707
Cac8I	GCNNGC	2 cut(s)	250, 789
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	1090
Cfr13I	GGNCC	6 cut(s)	21, 42, 97, 388, 389, 605
ClaI	ATCGAT	1 cut(s)	230
CpoI	CGGWCCG	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	59, 886, 1088
CspAI	ACCGGT	1 cut(s)	1090
CspI	CGGWCCG	1 cut(s)	21
CviAII	CATG	4 cut(s)	584, 596, 778, 848
CviQI	GTAC	3 cut(s)	59, 886, 1088
DdeI	CTNAG	6 cut(s)	375, 475, 664, 750, 965, 1122
DpnI	GATC	2 cut(s)	195, 441
DpnII	GATC	2 cut(s)	193, 439
DraI	TTTAAA	1 cut(s)	855
DraIII	CACNNNGTG	1 cut(s)	730
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 392
Eco47I	GGWCC	3 cut(s)	21, 42, 605
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	1010
Eco81I	CCTNAGG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	84
EcoO109I	RGGNCCY	2 cut(s)	388, 389
EcoT38I	GRGCYC	2 cut(s)	86, 392
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	587, 599, 781, 851
FatI	CATG	4 cut(s)	583, 595, 777, 847
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	309, 1011
FokI	GGATG	2 cut(s)	392, 783
FriOI	GRGCYC	2 cut(s)	86, 392
Fsp4HI	GCNGC	2 cut(s)	309, 1011
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	309, 1011
HaeIII	GGCC	4 cut(s)	98, 390, 482, 699
HapII	CCGG	3 cut(s)	45, 1091, 1115
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	587, 599, 781, 851
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	2 cut(s)	327, 931
HindII	GTYRAC	2 cut(s)	327, 931
HinfI	GANTC	5 cut(s)	227, 333, 557, 910, 1135
HpaII	CCGG	3 cut(s)	45, 1091, 1115
HphI	GGTGA	4 cut(s)	121, 363, 742, 1010
Hpy166II	GTNNAC	2 cut(s)	327, 931
Hpy188I	TCNGA	2 cut(s)	25, 1029
Hpy188III	TCNNGA	5 cut(s)	117, 224, 377, 766, 914
Hpy8I	GTNNAC	2 cut(s)	327, 931
HpyAV	CCTTC	3 cut(s)	169, 571, 810
HpyCH4III	ACNGT	3 cut(s)	21, 324, 400
HpyCH4V	TGCA	9 cut(s)	148, 296, 344, 652, 871, 953, 1013, 1035, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 588, 889
HpyF3I	CTNAG	6 cut(s)	375, 475, 664, 750, 965, 1122
Hsp92II	CATG	4 cut(s)	587, 599, 781, 851
HspAI	GCGC	1 cut(s)	427
KpnI	GGTACC	1 cut(s)	1091
Kzo9I	GATC	2 cut(s)	193, 439
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	2 cut(s)	320, 997
LweI	GCATC	4 cut(s)	113, 135, 331, 730
MaeI	CTAG	1 cut(s)	788
MaeIII	GTNAC	3 cut(s)	259, 283, 998
MalI	GATC	2 cut(s)	195, 441
MbiI	CCGCTC	1 cut(s)	749
MboI	GATC	2 cut(s)	193, 439
MboII	GAAGA	5 cut(s)	89, 491, 556, 686, 1016
MhlI	GDGCHC	3 cut(s)	86, 392, 709
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	4 cut(s)	576, 713, 1016, 1130
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	1080
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	4 cut(s)	465, 818, 854, 876
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	2 cut(s)	464, 817
MspI	CCGG	3 cut(s)	45, 1091, 1115
MspR9I	CCNGG	1 cut(s)	46
Mva1269I	GAATGC	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	154, 588, 889
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	193, 439
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	4 cut(s)	587, 599, 781, 851
NlaIV	GGNNCC	6 cut(s)	43, 99, 156, 390, 898, 1089
NmuCI	GTSAC	3 cut(s)	259, 283, 998
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	4 cut(s)	227, 557, 910, 1135
PfoI	TCCNGGA	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	1090
PkrI	GCNGC	2 cut(s)	310, 1012
Ple19I	CGATCG	1 cut(s)	196
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	86
PspN4I	GGNNCC	6 cut(s)	43, 99, 156, 390, 898, 1089
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	6 cut(s)	21, 42, 97, 388, 389, 605
PvuI	CGATCG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	60, 887, 1089
RsaNI	GTAC	3 cut(s)	59, 886, 1088
Rsr2I	CGGWCCG	1 cut(s)	21
RsrII	CGGWCCG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	465, 818, 854, 876
SatI	GCNGC	2 cut(s)	309, 1011
Sau3AI	GATC	2 cut(s)	193, 439
Sau96I	GGNCC	6 cut(s)	21, 42, 97, 388, 389, 605
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	3 cut(s)	86, 392, 709
SfaNI	GCATC	4 cut(s)	113, 135, 331, 730
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	3 cut(s)	21, 42, 605
SmlI	CTYRAG	4 cut(s)	236, 464, 766, 817
SmoI	CTYRAG	4 cut(s)	236, 464, 766, 817
Sse9I	AATT	4 cut(s)	576, 713, 1016, 1130
SsiI	CCGC	2 cut(s)	102, 747
SspMI	CTAG	1 cut(s)	788
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	21, 324, 400
TaqI	TCGA	5 cut(s)	118, 143, 192, 230, 442
TasI	AATT	4 cut(s)	576, 713, 1016, 1130
TatI	WGTACW	2 cut(s)	58, 885
TfiI	GAWTC	4 cut(s)	227, 557, 910, 1135
Tru1I	TTAA	4 cut(s)	465, 818, 854, 876
Tru9I	TTAA	4 cut(s)	465, 818, 854, 876
TscAI	CASTG	3 cut(s)	264, 483, 714
TseFI	GTSAC	3 cut(s)	259, 283, 998
TseI	GCWGC	2 cut(s)	308, 1010
Tsp45I	GTSAC	3 cut(s)	259, 283, 998
TspDTI	ATGAA	4 cut(s)	146, 600, 785, 933
TspRI	CASTG	3 cut(s)	264, 483, 714
Vha464I	CTTAAG	2 cut(s)	464, 817
VpaK11BI	GGWCC	3 cut(s)	21, 42, 605
XapI	RAATTY	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1114
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.