Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011603

Physical Location & Seq

Genomic Coordinates Forward (+)

46396438 .. 46398818

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAGTTGACAGGACTCAAAGATGCAGATAAGGAGGCTCTTGTTTATATTTTACCTCAGGATGTAAAGGGCCCTCAAACTGTTGATTTCAATCTACCAAATGATGAGCGCATTGTAAAAGATCGAGGAACATCTATGGTCATGCTTAAGAATATCTCAGTGACCAAGTTCAAACATATTCTTCTGCCTATAGCTGATGTTTGTATTACAAAGGAACAACAAGAACTTGTAGATTTTGAATCCTTCTTCACTCACACAATTTGCCATGAATGCTGTCATGGGATTGGACCTCATACCATAACACTTCCAAATGGTAGAAAATCTACAGTGAGATTGGAACTACAAGAACTCCACTCAGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCACTGAAATTCCTAATCCACAAGAAGTGGCATAAATTGCCATTCTATATGCTTATATGTGGTGCCATCTTGTTCACTGGTTTTGTTTGTTTGAGGGGATCTAGGAACTGCTCCCGAAGAGCTTATAGAAATGCATGTATGCTTCTTTTCTTGCTGGAAGCTTCCACTCAGTTTGTTTCGGTCTTGAGGAAGCTCATGGAATCTCATATACACGTGCTATATATTCTCAGAAAAGGACAAGCATTGCAGTTTAACTGGTTGTACAAGCAAGGAGCCTTTATTTTGAATCCTGATGAAACATTCTCTGTTGACTTTGATAAGGTTGAAGGTGACGTTGAGAGCCTGAGTAAGGAGATACTTACCATACAAGCAAAAGGTGACAAAGAGGCTGCAAAATTGCTTCTTCTGAAACACTGGGCAATGATAGACCCATTAAAATTTGCTTTGCAACGATTAGAAAAAGTTCAGGGACCGGTGGATATAATTCCCACTTCCCAGATTTCCGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0016787 GO:0019538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX Peptidase_M49

Protein Analysis

302

Amino Acids

34.29

Weight (kDa)

8.34

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011603)

Species	Orthologous Gene IDs
malus_domestica	MD00G1188100.v1.1 MD00G1188200.v1.1 MD09G1228800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0132171
rosa_laevigata	RLG00000008571 RLG00000008648 RLG00000010128 RLG00000011746 RLG00000012867 RLG00000019236
rosa_multiflora	Rmu_sc0003058.1_g000007
rosa_samantha	Rh1BG137400 Rh2AG355900 Rh2BG361900 Rh2DG379000 Rh3DG331500 Rh5BG403200 Rh5DG469700 Rh6AG232700
rosa_wichuraiana	Rw2G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	404, 833
AcvI	CACGTG	1 cut(s)	610
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	745
AflII	CTTAAG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	607
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	5 cut(s)	91, 172, 239, 682, 722
AluBI	AGCT	6 cut(s)	194, 359, 377, 518, 557, 589
AluI	AGCT	6 cut(s)	194, 359, 377, 518, 557, 589
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	2 cut(s)	70, 388
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	404, 833
AsiGI	ACCGGT	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	4 cut(s)	70, 71, 287, 866
AsuHPI	GGTGA	2 cut(s)	737, 785
AvaII	GGWCC	2 cut(s)	287, 866
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	74, 400
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	189, 324
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme18I	GGWCC	2 cut(s)	287, 866
BmgT120I	GGNCC	4 cut(s)	70, 71, 287, 866
BmiI	GGNNCC	4 cut(s)	72, 460, 670, 867
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	820
BpuEI	CTTGAG	1 cut(s)	601
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	90
BsaWI	WCCGGW	2 cut(s)	868, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	3 cut(s)	478, 656, 815
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	638, 822
Bse8I	GATNNNNATC	1 cut(s)	90
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMI	GCAATG	2 cut(s)	638, 822
BseMII	CTCAG	6 cut(s)	71, 171, 369, 578, 637, 731
BseNI	ACTGG	3 cut(s)	478, 656, 815
BseSI	GKGCMC	2 cut(s)	74, 400
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	2 cut(s)	72, 390
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	868
BsiSI	CCGG	2 cut(s)	869, 900
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	1 cut(s)	745
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	72, 390
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	74, 400
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	2 cut(s)	121, 494
BspANI	GGCC	2 cut(s)	72, 390
BspCNI	CTCAG	6 cut(s)	70, 170, 368, 577, 636, 732
BspLI	GGNNCC	4 cut(s)	72, 460, 670, 867
BspPI	GGATC	1 cut(s)	502
BspQI	GCTCTTC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	638, 822
BsrFI	RCCGGY	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	478, 656, 815
BssAI	RCCGGY	1 cut(s)	868
BssMI	GATC	2 cut(s)	121, 494
Bst4CI	ACNGT	2 cut(s)	82, 328
Bst6I	CTCTTC	1 cut(s)	508
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstAUI	TGTACA	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	610
BstDEI	CTNAG	6 cut(s)	57, 157, 355, 564, 623, 740
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	124, 497
BstMBI	GATC	2 cut(s)	121, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 433
BstNSI	RCATGY	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	189, 324
BstSLI	GKGCMC	2 cut(s)	74, 400
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	72, 390
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	5 cut(s)	165, 333, 398, 471, 808
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	4 cut(s)	70, 71, 287, 866
Csp6I	GTAC	1 cut(s)	658
CspAI	ACCGGT	1 cut(s)	868
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	5 cut(s)	142, 266, 278, 531, 592
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	6 cut(s)	57, 157, 355, 564, 623, 740
DpnI	GATC	2 cut(s)	123, 496
DpnII	GATC	2 cut(s)	121, 494
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	287, 866
Eco72I	CACGTG	1 cut(s)	610
Eco81I	CCTNAGG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	5 cut(s)	145, 269, 281, 534, 595
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	5 cut(s)	141, 265, 277, 530, 591
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	72, 390
HapII	CCGG	2 cut(s)	869, 900
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	145, 269, 281, 534, 595
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	2 cut(s)	9, 706
HindII	GTYRAC	2 cut(s)	9, 706
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	4 cut(s)	15, 239, 596, 682
HpaII	CCGG	2 cut(s)	869, 900
HphI	GGTGA	2 cut(s)	737, 785
Hpy166II	GTNNAC	3 cut(s)	9, 471, 706
Hpy188I	TCNGA	2 cut(s)	626, 804
Hpy188III	TCNNGA	4 cut(s)	59, 510, 580, 686
Hpy8I	GTNNAC	3 cut(s)	9, 471, 706
HpyAV	CCTTC	2 cut(s)	253, 716
HpyCH4III	ACNGT	2 cut(s)	82, 328
HpyCH4IV	ACGT	2 cut(s)	609, 729
HpyCH4V	TGCA	6 cut(s)	4, 26, 530, 643, 788, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 433
HpyF3I	CTNAG	6 cut(s)	57, 157, 355, 564, 623, 740
HpySE526I	ACGT	2 cut(s)	609, 729
Hsp92II	CATG	5 cut(s)	145, 269, 281, 534, 595
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	121, 494
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	512, 668
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	609, 729
MaeIII	GTNAC	3 cut(s)	160, 725, 773
MalI	GATC	2 cut(s)	123, 496
MboI	GATC	2 cut(s)	121, 494
MboII	GAAGA	5 cut(s)	173, 238, 377, 525, 791
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	74, 400
MluCI	AATT	6 cut(s)	258, 404, 431, 791, 833, 879
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	28, 66, 84, 119, 300, 483, 576, 775
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	3 cut(s)	147, 648, 830
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	2 cut(s)	869, 900
Mva1269I	GAATGC	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	270, 433
NdeII	GATC	2 cut(s)	121, 494
NlaIII	CATG	5 cut(s)	145, 269, 281, 534, 595
NlaIV	GGNNCC	4 cut(s)	72, 460, 670, 867
NmuCI	GTSAC	3 cut(s)	160, 725, 773
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	508
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	3 cut(s)	239, 596, 682
PinAI	ACCGGT	1 cut(s)	868
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	1 cut(s)	9
PmaCI	CACGTG	1 cut(s)	610
PmlI	CACGTG	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	610
PspCI	CACGTG	1 cut(s)	610
PspN4I	GGNNCC	4 cut(s)	72, 460, 670, 867
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	4 cut(s)	70, 71, 287, 866
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	3 cut(s)	147, 648, 830
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	2 cut(s)	121, 494
Sau96I	GGNCC	4 cut(s)	70, 71, 287, 866
SchI	GAGTC	1 cut(s)	9
SduI	GDGCHC	2 cut(s)	74, 400
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	189, 324
SinI	GGWCC	2 cut(s)	287, 866
SmlI	CTYRAG	2 cut(s)	146, 580
SmoI	CTYRAG	2 cut(s)	146, 580
Sse9I	AATT	6 cut(s)	258, 404, 431, 791, 833, 879
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	82, 328
TaiI	ACGT	2 cut(s)	612, 732
TaqI	TCGA	1 cut(s)	124
TaqII	GACCGA	1 cut(s)	565
TasI	AATT	6 cut(s)	258, 404, 431, 791, 833, 879
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	3 cut(s)	239, 596, 682
Tru1I	TTAA	3 cut(s)	147, 648, 830
Tru9I	TTAA	3 cut(s)	147, 648, 830
TscAI	CASTG	5 cut(s)	165, 333, 405, 478, 815
TseFI	GTSAC	3 cut(s)	160, 725, 773
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	3 cut(s)	160, 725, 773
TspDTI	ATGAA	2 cut(s)	282, 705
TspRI	CASTG	5 cut(s)	165, 333, 405, 478, 815
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	287, 866
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	2 cut(s)	404, 833
XceI	RCATGY	1 cut(s)	534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.