RLG00000010128

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011603
Physical Location & Seq
Forward (+)
63292218 .. 63292784
567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010128

Sequence Viewer

Length: 366 bp
ATGACTTTGGAGACAGCACGGTCTGACATTAGAGATGTGGGATCCGGGCAACTTCCTGTACTCCAAGAACAGATTGAAGAGAGCTCAATGATTATGGCCCCCGCATCGGTGATGTCTCGAAAGGAGGTTGTGAAGTTCTCCTTGATGCAAGTGGTGCCAGTGGGGAGGAAAAGGAAGGCTGTTCCCAAGTTCGATCGGTTCGGGAAAAAGTACTTGGCTTTTCCCGAATCGATACTTGAGGACAAAGTTGACAAACCAGTGACGGGATTGGAGGAGACGAATGTGACTACTCCTGCAATGGAATTCGCAGCTGTGGAGATACAGGTGGAATGTGAGCGCTCACATTCTACCACTGTTTTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.47

Weight (kDa)

5.49

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 154
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 36, 49
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 2 cut(s) 60, 212
AfeI AGCGCT 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 106, 263
AgsI TTSAA 1 cut(s) 77
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 84, 311
AluI AGCT 2 cut(s) 84, 311
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 3 cut(s) 5, 120, 269
AlwI GGATC 2 cut(s) 36, 49
Aor51HI AGCGCT 1 cut(s) 338
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 121
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 320
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 5, 120, 269
BfoI RGCGCY 1 cut(s) 340
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 3 cut(s) 43, 99, 156
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 113, 135
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 263
Bse1I ACTGG 2 cut(s) 158, 257
Bse3DI GCAATG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 106, 263
BseMI GCAATG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 158, 257
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 106, 263
BsmAI GTCTC 3 cut(s) 5, 120, 269
BsmBI CGTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 41, 193
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 98
BspDI ATCGAT 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 43, 99, 156
BspPI GGATC 2 cut(s) 36, 49
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 158, 257
BssMI GATC 2 cut(s) 41, 193
Bst4CI ACNGT 2 cut(s) 21, 355
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 2 cut(s) 44, 196
BstMAI GTCTC 3 cut(s) 5, 120, 269
BstMBI GATC 2 cut(s) 41, 193
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 230
BtsIMutI CAGTG 3 cut(s) 165, 264, 351
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 59, 211
CviJI RGCY 5 cut(s) 84, 98, 179, 218, 311
CviKI_1 RGCY 5 cut(s) 84, 98, 179, 218, 311
CviQI GTAC 2 cut(s) 59, 211
DpnI GATC 2 cut(s) 43, 195
DpnII GATC 2 cut(s) 41, 193
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47III AGCGCT 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 269
FaiI YATR 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 309
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 339
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 117, 202, 224
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 21, 355
HpyCH4V TGCA 2 cut(s) 148, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 41, 193
LpnPI CCDG 6 cut(s) 58, 69, 171, 270, 306, 308
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 113, 135
MaeIII GTNAC 2 cut(s) 259, 283
MalI GATC 2 cut(s) 43, 195
MboI GATC 2 cut(s) 41, 193
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 302
MnlI CCTC 4 cut(s) 118, 159, 232, 265
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 46
NdeII GATC 2 cut(s) 41, 193
NlaIV GGNNCC 3 cut(s) 43, 99, 156
NmuCI GTSAC 2 cut(s) 259, 283
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 310
Ple19I CGATCG 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 86
PspN4I GGNNCC 3 cut(s) 43, 99, 156
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 41
PvuI CGATCG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 60, 212
RsaNI GTAC 2 cut(s) 59, 211
SacI GAGCTC 1 cut(s) 86
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 2 cut(s) 41, 193
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 86, 129, 313, 327
SfaNI GCATC 2 cut(s) 113, 135
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 302
SsiI CCGC 1 cut(s) 102
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 21, 355
TaqI TCGA 3 cut(s) 118, 192, 230
TasI AATT 1 cut(s) 302
TatI WGTACW 2 cut(s) 58, 210
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 3 cut(s) 165, 264, 358
TseFI GTSAC 2 cut(s) 259, 283
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 259, 283
TspRI CASTG 3 cut(s) 165, 264, 358
XapI RAATTY 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.