RLG00000012867

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011603
Physical Location & Seq
Forward (+)
23316388 .. 23316966
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012867

Sequence Viewer

Length: 456 bp
ATGGGAACTCCCATGAATTTGGAGAATGCAGGGTCTGACATTAGAGATGTGGGATCCGGGCATCTTCTTGTCCTCCAGGAACAGATTGAAGTGGCCTCAATGGTTATGGTCCCCGCATCGGTGGTGGCTCGGAAGGAGGTTGTGAAGTTCTCCTCAATGCAAATGGTGCCAGTGGGGAGGAAAAGGAAGGCTGTTCCCAAGATTGATCGTTTCGGGAAAAGGTACTTGGCTTTTCCCGATTCGACACTTGAGGATGACAAAACTATACGTAAGTATAAATGTCGGGGTAAAGCTTTGTGTTTTGATTCAAATCTGGAAGATAATGTCCCTGACAAAGTTGGCAAGCCGGTGACGGTGCTGGAGGAGGCGAATGTGACTACTCCTGCAATGGAACTTGCAGCTGTGGAGGTATCGGTGGAATGTGAGGGCTCACATTCTACCACTATTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.49

Weight (kDa)

6.14

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 48, 61
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 89, 309
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 293, 401
AluI AGCT 2 cut(s) 293, 401
AlwI GGATC 2 cut(s) 48, 61
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 109
BamHI GGATCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 1 cut(s) 58
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 2 cut(s) 58, 77
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 55, 111, 168
BmrFI CCNGG 2 cut(s) 58, 77
BmsI GCATC 2 cut(s) 70, 125
BpmI CTGGAG 2 cut(s) 59, 380
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 142, 377
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 2 cut(s) 57, 347
BslFI GGGAC 2 cut(s) 95, 311
BslI CCNNNNNNNGG 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 95, 311
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 53, 205
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 55, 111, 168
BspPI GGATC 2 cut(s) 48, 61
BspT107I GGYRCC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 2 cut(s) 53, 205
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 56, 208
BstMBI GATC 2 cut(s) 53, 205
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 56, 75
BstSNI TACGTA 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 13
CviJI RGCY 8 cut(s) 95, 128, 191, 230, 293, 346, 401, 429
CviKI_1 RGCY 8 cut(s) 95, 128, 191, 230, 293, 346, 401, 429
CviQI GTAC 1 cut(s) 223
DpnI GATC 2 cut(s) 55, 207
DpnII GATC 2 cut(s) 53, 205
Eco105I TACGTA 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 1 cut(s) 16
FaiI YATR 4 cut(s) 14, 107, 266, 276
FaqI GGGAC 2 cut(s) 95, 311
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 59, 380
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 57, 347
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 239, 305
HpaII CCGG 2 cut(s) 57, 347
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 37, 132
Hpy188III TCNNGA 3 cut(s) 214, 236, 314
HpyAV CCTTC 2 cut(s) 127, 181
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 29, 160, 386, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 2 cut(s) 53, 205
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 2 cut(s) 70, 125
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 349, 373
MalI GATC 2 cut(s) 55, 207
MboI GATC 2 cut(s) 53, 205
MboII GAAGA 2 cut(s) 56, 329
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 1 cut(s) 16
MseI TTAA 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 57, 347
MspR9I CCNGG 2 cut(s) 58, 77
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 58
NdeII GATC 2 cut(s) 53, 205
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 3 cut(s) 55, 111, 168
NmuCI GTSAC 2 cut(s) 349, 373
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 239, 305
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 55, 111, 168
PspPI GGNCC 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 53, 205
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 58, 77
SduI GDGCHC 1 cut(s) 431
SetI ASST 6 cut(s) 141, 224, 271, 295, 403, 411
SfaNI GCATC 2 cut(s) 70, 125
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SnaBI TACGTA 1 cut(s) 269
Sse9I AATT 1 cut(s) 16
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 56, 75
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 242
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 239, 305
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 349, 373
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 349, 373
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.