Rh1BG137400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011603
Physical Location & Seq
Forward (+)
22948859 .. 22950443
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG137400.1

Sequence Viewer

Length: 297 bp
ATGGAGGAAGAGTTGGAGTCTGAAGGTGTGGATGTAGGGGTACCAACCGTGGGGAAGGAAGGCCATGCGTCTTTCACTCATCTTGGCCAGGGATCCAAGATAATGGAAACTCCCATGACTTTGGAGAAAGCACGGTCTGACATTAGAGATGTGGGGTCCGGGCAACTTCCTGTACTCCAAGAACAGATTGAAGGGCAACTTCCTGTACTCCAAGAACAGATTGAAGAGATCTCAATGATTATGGCCCCCGCATCGGTTCATGTCGGTGTCATTCTCGATATGGGATCAAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.57

Weight (kDa)

4.42

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 40
AciI CCGC 1 cut(s) 249
AclWI GGATC 3 cut(s) 87, 100, 292
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 3 cut(s) 42, 174, 207
AfiI CCNNNNNNNGG 2 cut(s) 50, 253
AgsI TTSAA 2 cut(s) 191, 224
AjnI CCWGG 1 cut(s) 87
AlwI GGATC 3 cut(s) 87, 100, 292
AoxI GGCC 3 cut(s) 61, 85, 243
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 156, 244
AsuC2I CCSGG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 87
BamHI GGATCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 160
BglII AGATCT 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 89, 160
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 156, 244
BmiI GGNNCC 4 cut(s) 42, 94, 157, 246
BmrFI CCNGG 2 cut(s) 89, 160
BmsI GCATC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 48, 88
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 253
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 48, 88
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 50, 253
BshFI GGCC 3 cut(s) 63, 87, 245
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 50, 253
BsnI GGCC 3 cut(s) 63, 87, 245
Bsp143I GATC 3 cut(s) 92, 228, 284
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 63, 87, 245
BspLI GGNNCC 4 cut(s) 42, 94, 157, 246
BspPI GGATC 3 cut(s) 87, 100, 292
BspT107I GGYRCC 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 48, 88
BssMI GATC 3 cut(s) 92, 228, 284
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 49, 135
Bst6I CTCTTC 2 cut(s) 3, 219
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 95, 231, 287
BstMBI GATC 3 cut(s) 92, 228, 284
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 87, 158
BstX2I RGATCY 2 cut(s) 92, 228
BstXI CCANNNNNNTGG 2 cut(s) 103, 121
BstYI RGATCY 2 cut(s) 92, 228
BsuRI GGCC 3 cut(s) 63, 87, 245
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 156, 244
CseI GACGC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 41, 173, 206
CviAII CATG 3 cut(s) 65, 115, 260
CviJI RGCY 3 cut(s) 63, 87, 245
CviKI_1 RGCY 3 cut(s) 63, 87, 245
CviQI GTAC 3 cut(s) 41, 173, 206
DpnI GATC 3 cut(s) 94, 230, 286
DpnII GATC 3 cut(s) 92, 228, 284
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 3, 219
EarI CTCTTC 2 cut(s) 3, 219
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 68, 118, 263
FaiI YATR 5 cut(s) 66, 116, 242, 261, 281
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 3 cut(s) 64, 114, 259
FauI CCCGC 1 cut(s) 256
FokI GGATG 1 cut(s) 44
HaeIII GGCC 3 cut(s) 63, 87, 245
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 57
Hin1II CATG 3 cut(s) 68, 118, 263
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 22, 139
Hpy188III TCNNGA 2 cut(s) 275, 288
HpyAV CCTTC 4 cut(s) 17, 49, 53, 185
HpyCH4III ACNGT 2 cut(s) 49, 135
Hsp92II CATG 3 cut(s) 68, 118, 263
KpnI GGTACC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 92, 228, 284
LpnPI CCDG 5 cut(s) 74, 101, 172, 183, 216
LweI GCATC 1 cut(s) 260
MalI GATC 3 cut(s) 94, 230, 286
MboI GATC 3 cut(s) 92, 228, 284
MboII GAAGA 2 cut(s) 20, 236
MflI RGATCY 2 cut(s) 92, 228
MlsI TGGCCA 1 cut(s) 87
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 1 cut(s) 26
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 89, 160
MvaI CCWGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 160
NdeII GATC 3 cut(s) 92, 228, 284
NlaIII CATG 3 cut(s) 68, 118, 263
NlaIV GGNNCC 4 cut(s) 42, 94, 157, 246
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 42, 94, 157, 246
PspPI GGNCC 2 cut(s) 156, 244
PsuI RGATCY 2 cut(s) 92, 228
RsaI GTAC 3 cut(s) 42, 174, 207
RsaNI GTAC 3 cut(s) 41, 173, 206
RseI CAYNNNNRTG 1 cut(s) 264
Sau3AI GATC 3 cut(s) 92, 228, 284
Sau96I GGNCC 2 cut(s) 156, 244
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 89, 160
SetI ASST 1 cut(s) 28
SfaNI GCATC 1 cut(s) 260
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 264
SsiI CCGC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 87, 158
TaaI ACNGT 2 cut(s) 49, 135
TaqI TCGA 1 cut(s) 276
TatI WGTACW 2 cut(s) 172, 205
TspDTI ATGAA 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.