Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

28265621 .. 28267590

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGACTGATAGTGTCAGGGACACCTTGGCGGCAATGCGGTCTTCCCCCAAGTTTGTGCTGTGGCAGTCTCCGTTTTATGATGTGAAGAGCTTGAAGGGTATTCCAGATTCATACGATGAATTTACCAAACTTAGATTGCCAGTAACTTTGCCACTGTCTTCCGCAACATTAACTGGTCGAAACATGGAAGTGGATTGGGGTCCCATCCCCACATTTAATGATTTGAAACAATTTATCAAAGAAAATCCATGCAAAATGGAAGAGAGTTGGAATTCAATGAAAGAGATGTGCGCTGAAATGATTTTGATGAAGGAAATTTTGAAGCCTGGGCAAAGAAATCTAAACAATTCGAGTTCTAGACATGTCCAGGTCCCATCAAAGAAGCGCGAGAATTCTATGTTTGTCACTACAAAGGGAAATTCTCTGGGAGGGGGGACGAGTAAAGCATTGAAAGCTTTGGGTGCATACTTGAGATATTTGGAGGGAACAGAACGTGATCACTACTGGTGGGAAATACATGAACAGATGCCCTGTGCTGAAAGTCGGGATGGAGCTTCATTTACTACTCTTTGGTCCTGCCTTTTTTCTTTTATCCTATCCAGAAGAAGAGTATATTTTGAAGCTCTCAAGTATAAGAAAGAACGAGATTCTGGATTTCTATCTCCTTTTGGATATTCATCCGCTACAATTGCCGCAACTGTTGATTCGGTGTGCTCAATGGAGTGGTATTTGCTTCTCGCTCTAAAAAGTCAGTTAAGTGATGACAGAAGATTTTGTATTCGTATCTGGAGATGGAAAGGCTATCTAATTCTTTTCTATTTCAAAGATATTCTGTGCCTTTATACAGTTGTGGGTGAAGAAGGTCCTGCTACTCTTCTGGTTCATGGTTTTGGAGCCTTCTTGGAGCATTACCGTGACAACATACGCGCCATTGCTGAAGGTGGAAATCGAGTATGGGCCATCACACTATTAGGATTTGGCAAATCGGAAAAGCCAAATATTGAATACACTGAACTCATGTGGGCTGAAATGCTTAGAGATTTCATTATTGAAGTTGTGGGTGAACCAGCACATCTGGTTGGGAACTCAATTGGTGTGTGCATATCTGTTGTGTATCTTATTGTTATTTGTTACGATTTTCTGTCTCCATGTTATATTATTGCAATTGTCGCTCGTCTCTGGCCTGCTTTGGTCAAATCTGTGGTTCTTATCAACAGTGGTGGGAATGTTATTCCAGGATATTCCTCTGTGTTGTTCGCCAAAGTAAGCTTGATTAAAAACAGTCTCATAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

432

Amino Acids

48.92

Weight (kDa)

8.54

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	292 - 377	3.8e-08	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	292 - 406	1.4e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	387, 927
AciI	CCGC	5 cut(s)	29, 37, 162, 681, 693
AcsI	RAATTY	5 cut(s)	119, 271, 315, 391, 418
AcuI	CTGAAG	1 cut(s)	957
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	9 cut(s)	94, 226, 276, 322, 451, 620, 823, 1004, 1052
AjnI	CCWGG	3 cut(s)	325, 366, 1234
AluBI	AGCT	5 cut(s)	90, 455, 554, 623, 1269
AluI	AGCT	5 cut(s)	90, 455, 554, 623, 1269
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	4 cut(s)	72, 1149, 1181, 1289
AoxI	GGCC	2 cut(s)	957, 1181
ApoI	RAATTY	5 cut(s)	119, 271, 315, 391, 418
AspLEI	GCGC	3 cut(s)	293, 387, 929
AspS9I	GGNCC	5 cut(s)	200, 370, 573, 863, 957
AsuHPI	GGTGA	2 cut(s)	866, 1073
AvaII	GGWCC	4 cut(s)	200, 370, 573, 863
BbsI	GAAGAC	2 cut(s)	33, 150
Bbv12I	GWGCWC	1 cut(s)	716
BccI	CCATC	5 cut(s)	212, 382, 542, 786, 968
BciT130I	CCWGG	3 cut(s)	327, 368, 1236
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	4 cut(s)	72, 1149, 1181, 1289
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	30, 693
BlsI	GCNGC	2 cut(s)	31, 694
Bme1390I	CCNGG	3 cut(s)	327, 368, 1236
Bme18I	GGWCC	4 cut(s)	200, 370, 573, 863
BmgT120I	GGNCC	5 cut(s)	200, 370, 573, 863, 957
BmiI	GGNNCC	4 cut(s)	201, 202, 372, 895
BmrFI	CCNGG	3 cut(s)	327, 368, 1236
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	33, 150
BpmI	CTGGAG	1 cut(s)	808
BpuEI	CTTGAG	2 cut(s)	490, 611
BsaBI	GATNNNNATC	2 cut(s)	658, 676
BsaJI	CCNNGG	2 cut(s)	24, 326
Bse1I	ACTGG	3 cut(s)	140, 178, 509
Bse3DI	GCAATG	2 cut(s)	39, 930
Bse8I	GATNNNNATC	2 cut(s)	658, 676
BseBI	CCWGG	3 cut(s)	327, 368, 1236
BseDI	CCNNGG	2 cut(s)	24, 326
BseGI	GGATG	3 cut(s)	204, 553, 677
BseJI	GATNNNNATC	2 cut(s)	658, 676
BseMI	GCAATG	2 cut(s)	39, 930
BseNI	ACTGG	3 cut(s)	140, 178, 509
Bsh1236I	CGCG	2 cut(s)	387, 927
BshFI	GGCC	2 cut(s)	959, 1183
BsiHKAI	GWGCWC	1 cut(s)	716
BslFI	GGGAC	4 cut(s)	32, 186, 356, 448
BsmAI	GTCTC	4 cut(s)	72, 1149, 1181, 1289
BsmBI	CGTCTC	1 cut(s)	1181
BsmFI	GGGAC	4 cut(s)	32, 186, 356, 448
BsnI	GGCC	2 cut(s)	959, 1183
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	5 cut(s)	29, 37, 162, 681, 693
BspANI	GGCC	2 cut(s)	959, 1183
BspFNI	CGCG	2 cut(s)	387, 927
BspLI	GGNNCC	4 cut(s)	201, 202, 372, 895
BspQI	GCTCTTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	39, 930
BsrI	ACTGG	3 cut(s)	140, 178, 509
BssECI	CCNNGG	2 cut(s)	24, 326
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	3 cut(s)	327, 368, 1236
Bst4CI	ACNGT	6 cut(s)	156, 700, 847, 914, 1217, 1283
Bst6I	CTCTTC	4 cut(s)	80, 255, 601, 879
BstC8I	GCNNGC	1 cut(s)	1185
BstDEI	CTNAG	2 cut(s)	131, 1034
BstF5I	GGATG	3 cut(s)	204, 553, 677
BstFNI	CGCG	2 cut(s)	387, 927
BstHHI	GCGC	3 cut(s)	293, 387, 929
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	4 cut(s)	72, 1149, 1181, 1289
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 461, 689, 1169
BstNI	CCWGG	3 cut(s)	327, 368, 1236
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	325, 366, 1234
BstUI	CGCG	2 cut(s)	387, 927
BstV2I	GAAGAC	2 cut(s)	33, 150
BsuRI	GGCC	2 cut(s)	959, 1183
BtsCI	GGATG	3 cut(s)	204, 553, 677
BtsIMutI	CAGTG	3 cut(s)	152, 1008, 1222
Cac8I	GCNNGC	1 cut(s)	1185
CfoI	GCGC	3 cut(s)	293, 387, 929
Cfr13I	GGNCC	5 cut(s)	200, 370, 573, 863, 957
CspCI	CAANNNNNGTGG	2 cut(s)	1201, 1236
CviAII	CATG	7 cut(s)	184, 249, 362, 518, 884, 1018, 1149
DdeI	CTNAG	2 cut(s)	131, 1034
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	4 cut(s)	80, 255, 601, 879
EarI	CTCTTC	4 cut(s)	80, 255, 601, 879
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	4 cut(s)	200, 370, 573, 863
Eco57I	CTGAAG	1 cut(s)	957
EcoO109I	RGGNCCY	3 cut(s)	200, 370, 863
EcoRI	GAATTC	2 cut(s)	271, 391
EcoRII	CCWGG	3 cut(s)	325, 366, 1234
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	1181
FaeI	CATG	7 cut(s)	187, 252, 365, 521, 887, 1021, 1152
FaqI	GGGAC	4 cut(s)	32, 186, 356, 448
FatI	CATG	7 cut(s)	183, 248, 361, 517, 883, 1017, 1148
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	30, 693
FokI	GGATG	3 cut(s)	191, 560, 664
Fsp4HI	GCNGC	2 cut(s)	30, 693
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	3 cut(s)	292, 386, 928
GluI	GCNGC	2 cut(s)	30, 693
GsuI	CTGGAG	1 cut(s)	808
HaeIII	GGCC	2 cut(s)	959, 1183
HhaI	GCGC	3 cut(s)	293, 387, 929
Hin1II	CATG	7 cut(s)	187, 252, 365, 521, 887, 1021, 1152
Hin6I	GCGC	3 cut(s)	291, 385, 927
HinP1I	GCGC	3 cut(s)	291, 385, 927
HindIII	AAGCTT	2 cut(s)	453, 1267
HinfI	GANTC	3 cut(s)	107, 647, 704
HphI	GGTGA	2 cut(s)	866, 1073
Hpy166II	GTNNAC	1 cut(s)	1064
Hpy188I	TCNGA	1 cut(s)	988
Hpy188III	TCNNGA	6 cut(s)	104, 357, 545, 600, 651, 787
Hpy8I	GTNNAC	1 cut(s)	1064
HpyAV	CCTTC	5 cut(s)	88, 304, 854, 907, 932
HpyCH4III	ACNGT	6 cut(s)	156, 700, 847, 914, 1217, 1283
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	252, 464, 1101, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 461, 689, 1169
HpyF3I	CTNAG	2 cut(s)	131, 1034
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	7 cut(s)	187, 252, 365, 521, 887, 1021, 1152
HspAI	GCGC	3 cut(s)	291, 385, 927
KflI	GGGWCCC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	551, 893, 904
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	4 cut(s)	142, 403, 914, 1130
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	9 cut(s)	33, 97, 150, 272, 615, 618, 780, 866, 869
MfeI	CAATTG	3 cut(s)	687, 1089, 1164
MhlI	GDGCHC	1 cut(s)	716
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	422, 475, 1255
MseI	TTAA	4 cut(s)	170, 216, 755, 1275
MslI	CAYNNNNRTG	2 cut(s)	188, 912
MspR9I	CCNGG	3 cut(s)	327, 368, 1236
MunI	CAATTG	3 cut(s)	687, 1089, 1164
MvaI	CCWGG	3 cut(s)	327, 368, 1236
MvnI	CGCG	2 cut(s)	387, 927
MwoI	GCNNNNNNNGC	4 cut(s)	452, 461, 689, 1169
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	7 cut(s)	187, 252, 365, 521, 887, 1021, 1152
NlaIV	GGNNCC	4 cut(s)	201, 202, 372, 895
NmuCI	GTSAC	2 cut(s)	403, 914
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	107, 647, 704
PfoI	TCCNGGA	1 cut(s)	1234
PkrI	GCNGC	2 cut(s)	31, 694
PpuMI	RGGWCCY	3 cut(s)	200, 370, 863
PscI	ACATGT	1 cut(s)	361
Psp5II	RGGWCCY	3 cut(s)	200, 370, 863
Psp6I	CCWGG	3 cut(s)	325, 366, 1234
PspGI	CCWGG	3 cut(s)	325, 366, 1234
PspN4I	GGNNCC	4 cut(s)	201, 202, 372, 895
PspPI	GGNCC	5 cut(s)	200, 370, 573, 863, 957
PspPPI	RGGWCCY	3 cut(s)	200, 370, 863
RseI	CAYNNNNRTG	2 cut(s)	188, 912
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	170, 216, 755, 1275
SatI	GCNGC	2 cut(s)	30, 693
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	5 cut(s)	200, 370, 573, 863, 957
ScrFI	CCNGG	3 cut(s)	327, 368, 1236
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	1 cut(s)	516
SinI	GGWCC	4 cut(s)	200, 370, 573, 863
SmiMI	CAYNNNNRTG	2 cut(s)	188, 912
SmlI	CTYRAG	2 cut(s)	469, 626
SmoI	CTYRAG	2 cut(s)	469, 626
SsiI	CCGC	5 cut(s)	29, 37, 162, 681, 693
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	325, 366, 1234
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	6 cut(s)	156, 700, 847, 914, 1217, 1283
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	178, 350, 949
TauI	GCSGC	2 cut(s)	32, 695
TfiI	GAWTC	3 cut(s)	107, 647, 704
Tru1I	TTAA	4 cut(s)	170, 216, 755, 1275
Tru9I	TTAA	4 cut(s)	170, 216, 755, 1275
TscAI	CASTG	3 cut(s)	159, 1015, 1222
TseFI	GTSAC	2 cut(s)	403, 914
Tsp45I	GTSAC	2 cut(s)	403, 914
TspDTI	ATGAA	9 cut(s)	99, 132, 293, 323, 534, 546, 666, 872, 1033
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	159, 1015, 1222
VpaK11BI	GGWCC	4 cut(s)	200, 370, 573, 863
XapI	RAATTY	5 cut(s)	119, 271, 315, 391, 418
XbaI	TCTAGA	1 cut(s)	356
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.