Rmu_co8417971.1_g000001

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8417971.1
OG0005426
Physical Location & Seq
Forward (+)
733 .. 1389
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8417971.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
atggcttcactcttcactctccaacactctccctcgctttccttctccccaagaacccacctttactcgccgaaacggtgccgtttccgagctcaaatttcagtcaacggcggagcgaagaccggcgccgccgtcgtttggctgaagcacgacctccgaatcgacgatcatccagctcttctcgccgccgctgatcactccggagctattcctctctatgtcttcgaccaccgtattctctcccgtaagtctcaccgtatatatacactgctcagtacacgaatacgtatagcgaatttgatttggagtataatcaaatgcgtaggttttgaagacgaaatgctggaaatggttgcggttgctttagaagatttgagaaactcgttgagagataaaggtacgaacttgatggtgaggtttgggaatgcagagaatgtgatacaagagattgtagaaaaggttcgggttgtgagcactgtgtatgctgaggaggaggtggagtatggtttaagggagatggttggtgttgtcaaggacagattgggaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

183

Amino Acids

20.65

Weight (kDa)

8.95

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 125
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 5 cut(s) 111, 129, 186, 189, 356
AcsI RAATTY 2 cut(s) 96, 295
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 277, 400
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 332
AluBI AGCT 3 cut(s) 92, 176, 206
AluI AGCT 3 cut(s) 92, 176, 206
Alw21I GWGCWC 2 cut(s) 94, 476
Alw26I GTCTC 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 200
ApoI RAATTY 2 cut(s) 96, 295
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 245, 424
BanI GGYRCC 2 cut(s) 78, 125
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 3 cut(s) 125, 214, 339
Bbv12I GWGCWC 2 cut(s) 94, 476
BbvCI CCTCAGC 1 cut(s) 486
BccI CCATC 2 cut(s) 403, 511
BceAI ACGGC 3 cut(s) 66, 116, 124
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 3 cut(s) 129, 186, 189
BlsI GCNGC 3 cut(s) 130, 187, 190
BmiI GGNNCC 2 cut(s) 80, 127
BpiI GAAGAC 3 cut(s) 125, 214, 339
Bpu10I CCTNAGC 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 200
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 286, 477
BseRI GAGGAG 2 cut(s) 503, 506
BshNI GGYRCC 2 cut(s) 78, 125
BsiHKAI GWGCWC 2 cut(s) 94, 476
BsiSI CCGG 2 cut(s) 123, 201
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 94, 476
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 2 cut(s) 166, 193
BspACI CCGC 5 cut(s) 111, 129, 186, 189, 356
BspCNI CTCAG 2 cut(s) 285, 478
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 80, 127
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 78, 125
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 2 cut(s) 166, 193
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 4 cut(s) 78, 233, 257, 478
Bst6I CTCTTC 2 cut(s) 17, 183
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 272, 486
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 169, 196
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 166, 193
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSNI TACGTA 1 cut(s) 287
BstV2I GAAGAC 3 cut(s) 125, 214, 339
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 266, 474
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 122
Csp6I GTAC 2 cut(s) 276, 399
CviJI RGCY 5 cut(s) 5, 92, 142, 176, 206
CviKI_1 RGCY 5 cut(s) 5, 92, 142, 176, 206
CviQI GTAC 2 cut(s) 276, 399
DdeI CTNAG 2 cut(s) 272, 486
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 168, 195
DpnII GATC 2 cut(s) 166, 193
Eam1104I CTCTTC 2 cut(s) 17, 183
EarI CTCTTC 2 cut(s) 17, 183
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
FaiI YATR 8 cut(s) 219, 260, 262, 264, 290, 311, 483, 504
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 129, 186, 189
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 129, 186, 189
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 129, 186, 189
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 2 cut(s) 123, 201
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 123, 201
HphI GGTGA 2 cut(s) 245, 424
Hpy166II GTNNAC 2 cut(s) 106, 278
Hpy188I TCNGA 2 cut(s) 89, 158
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 106, 278
Hpy99I CGWCG 2 cut(s) 137, 167
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 4 cut(s) 78, 233, 257, 478
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 272, 486
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 166, 193
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 113, 203
LpnPI CCDG 4 cut(s) 136, 186, 214, 329
MaeII ACGT 1 cut(s) 286
MalI GATC 2 cut(s) 168, 195
MboI GATC 2 cut(s) 166, 193
MboII GAAGA 6 cut(s) 4, 130, 170, 214, 344, 380
MhlI GDGCHC 2 cut(s) 94, 476
MluCI AATT 2 cut(s) 96, 295
Mly113I GGCGCC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 7 cut(s) 43, 164, 222, 408, 481, 484, 487
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 123, 201
Mva1269I GAATGC 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 126
NdeII GATC 2 cut(s) 166, 193
NlaIV GGNNCC 2 cut(s) 80, 127
PciSI GCTCTTC 1 cut(s) 183
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 130, 187, 190
PluTI GGCGCC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 80, 127
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
RsaI GTAC 2 cut(s) 277, 400
RsaNI GTAC 2 cut(s) 276, 399
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 3 cut(s) 129, 186, 189
Sau3AI GATC 2 cut(s) 166, 193
SduI GDGCHC 2 cut(s) 94, 476
SfoI GGCGCC 1 cut(s) 127
SnaBI TACGTA 1 cut(s) 287
Sse9I AATT 2 cut(s) 96, 295
SsiI CCGC 5 cut(s) 111, 129, 186, 189, 356
SspDI GGCGCC 1 cut(s) 125
SstI GAGCTC 1 cut(s) 94
TaaI ACNGT 4 cut(s) 78, 233, 257, 478
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 162, 225
TasI AATT 2 cut(s) 96, 295
TatI WGTACW 1 cut(s) 275
TauI GCSGC 3 cut(s) 131, 188, 191
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 273, 481
TspRI CASTG 2 cut(s) 273, 481
XapI RAATTY 2 cut(s) 96, 295
XmnI GAANNNNTTC 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.