Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

61056772 .. 61059621

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG392100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGTTGGTGTTGTCAAGGACAGATTGGGAACAATGCCTTCTGCCCCTGACTTTGTGCTGTGGCGGACGCCGTTTTATGATGTGAAGAGCTTGAAGGGAATTCCTGATTCCTACAATGACTTTACTAAACTTCGATTGCCAATAACCACACCGCTTCCGCCAGCTACATTTTCCGCTAGTGCAATGGAGTTGGACTGGGGTCCCATGCCCACATTTGATGATTTGAAGGAGTTTGTAAACGCAAATCCATGCAAAATGCAAGAGAGGTGGACTTCAATCAAGGTCCAGTCAAAGAGTCGTGATGAAGTGTTTGCCCCCACAAAAGGAAATTCTATGGGGGGTCAGACGAGCACGGTATTGAATTCTTTGGGTGCATACCTGAGATACTTTGATGGAGAATCACGGGATGACTTCTGGCAGAAGGTGCATGAAAGGATGCCCTATGCTGAAAGCCGGGATGGAGCTTCATTTAATACTCTCTTTAGTACAGCCCTTTCTCTTGGCATCCTATCCAGAAGGAGAGTATATTTTGAAGCTATTAAGCATGACAAAGAACGAAACTGTGGATTTCTATCTCCTTTTGGTTCAGGAGCAACAATTTCTGCTGCTGTTGATTCGGTGTGCTCAATGGAGTGGTATTGGCTTCTGGCTCTGAAAAGTCAGATAAGTAATGATAGAAGATATCATATTCGTATCTGGAGATGGAAGGGCTATCTAATTCAGTATACTGCTGTTGGTCATGAAGGTCCTGCTATTCTGCTTGTGCATGGTTTTGGAGCCTTTTTGGAGCATTACCGTGATAACCTAGGTCGCATCGCTGAAGGTGGAAACCGAGTTTGGGCCATTACAATTTTAGGATTTGGGAAATCAGAGAAGCCAAATATTGTGTACACTGAACTCCTGTGGTCTGAAATGCTTAGAGATTTCATTCTTGAAGTTGTGGGTGAACCAGTGCATCTTGTTGGGAACTCAATTGGTGGTTATATTATTGCAATTGTTGCTCGTCTTTGGCCTGCTCTGGCCAAATCTGTTGTTCTTATTAACAGTGGGGGTGAGGTTATTCCATACTCCTCCCCACCATTCACTAAAGAAAGAAAAACATCAGGGGCTTCATGGCTGGGTGCTCGATTTCTTTTGTTCTACCTAAGGTTTCAACTCAAGGACATAGTGCAGAATTGCTATCCAAATAAAACAGAGCGAGTGGACAATTGGCTTATAAATGAAATGCTAAGAGCATCATATGATCCTGGGGTGGCAGTGGTCCTAGAAAGCGTTTTTAGCTTCAATCTCTCACTTCCTCTTAATTATCTCTTGAAAGGATTCAAGAAAAAGGTTCTCATTATCCAGGGAATGAGAGATCCAATATCCAACTCCAAATCAAAAGTGGCTATGATTAAAGAGCATTCTGATGGGTTCTTAATCAAGGAATTGGATGCTGGTCATTGTCCTCACGATGAACTGCCTGAGGAAGTAAATTCAATTATCTGTGAATGGATAGTAACCCTGAGTAGTAAACGCCCTGTTGTGAGCTTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

512

Amino Acids

57.87

Weight (kDa)

8.78

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	250 - 486	2.2e-13	alpha/beta hydrolase fold
Hydrolase_4	PF12146	251 - 465	1.7e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	252 - 492	1.5e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1217
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	4 cut(s)	64, 152, 158, 174
AclWI	GGATC	2 cut(s)	1238, 1352
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	4 cut(s)	99, 328, 361, 1474
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	2 cut(s)	487, 890
AfiI	CCNNNNNNNGG	2 cut(s)	323, 838
AjnI	CCWGG	2 cut(s)	1246, 1344
AjuI	GAANNNNNNNTTGG	2 cut(s)	820, 852
AluBI	AGCT	6 cut(s)	90, 164, 464, 536, 1281, 1530
AluI	AGCT	6 cut(s)	90, 164, 464, 536, 1281, 1530
Alw21I	GWGCWC	3 cut(s)	353, 626, 1126
AlwI	GGATC	2 cut(s)	1238, 1352
AoxI	GGCC	3 cut(s)	840, 1010, 1020
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	4 cut(s)	99, 328, 361, 1474
Asp700I	GAANNNNTTC	1 cut(s)	1319
AspA2I	CCTAGG	1 cut(s)	805
AspS9I	GGNCC	5 cut(s)	200, 283, 746, 840, 1261
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	956, 1064
AvaII	GGWCC	4 cut(s)	200, 283, 746, 1261
AvrII	CCTAGG	1 cut(s)	805
AxyI	CCTNAGG	2 cut(s)	1145, 1464
BalI	TGGCCA	1 cut(s)	1022
Bbv12I	GWGCWC	3 cut(s)	353, 626, 1126
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	4 cut(s)	386, 452, 696, 1403
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	1248, 1346
BcnI	CCSGG	1 cut(s)	455
BfaI	CTAG	3 cut(s)	177, 806, 1265
BisI	GCNGC	1 cut(s)	606
BlnI	CCTAGG	1 cut(s)	805
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	3 cut(s)	455, 1248, 1346
Bme18I	GGWCC	4 cut(s)	200, 283, 746, 1261
BmgT120I	GGNCC	5 cut(s)	200, 283, 746, 840, 1261
BmiI	GGNNCC	3 cut(s)	201, 202, 778
BmrFI	CCNGG	3 cut(s)	455, 1248, 1346
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	6 cut(s)	426, 513, 822, 964, 1244, 1423
BmuI	ACTGGG	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	1142
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	805, 1247, 1345
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 838
Bse1I	ACTGG	3 cut(s)	200, 286, 950
Bse21I	CCTNAGG	2 cut(s)	1145, 1464
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	571
BseBI	CCWGG	2 cut(s)	1248, 1346
BseDI	CCNNGG	3 cut(s)	805, 1247, 1345
BseGI	GGATG	5 cut(s)	412, 441, 463, 504, 1438
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	323, 838
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	371, 1455, 1496
BseNI	ACTGG	3 cut(s)	200, 286, 950
BseRI	GAGGAG	1 cut(s)	1060
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	1 cut(s)	1117
BsgI	GTGCAG	1 cut(s)	1190
BshFI	GGCC	3 cut(s)	842, 1012, 1022
BsiHKAI	GWGCWC	3 cut(s)	353, 626, 1126
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	323, 838
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	1402
BsnI	GGCC	3 cut(s)	842, 1012, 1022
Bsp1286I	GDGCHC	3 cut(s)	353, 626, 1126
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	2 cut(s)	1243, 1357
BspACI	CCGC	4 cut(s)	64, 152, 158, 174
BspANI	GGCC	3 cut(s)	842, 1012, 1022
BspCNI	CTCAG	3 cut(s)	372, 1456, 1497
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	3 cut(s)	201, 202, 778
BspPI	GGATC	2 cut(s)	1238, 1352
BspQI	GCTCTTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	3 cut(s)	200, 286, 950
BssECI	CCNNGG	3 cut(s)	805, 1247, 1345
BssMI	GATC	2 cut(s)	1243, 1357
BssNAI	GTATAC	1 cut(s)	726
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	726
Bst2UI	CCWGG	2 cut(s)	1248, 1346
Bst4CI	ACNGT	4 cut(s)	355, 563, 797, 1046
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	2 cut(s)	424, 998
BstAUI	TGTACA	1 cut(s)	888
BstC8I	GCNNGC	2 cut(s)	162, 1014
BstDEI	CTNAG	6 cut(s)	380, 917, 1145, 1229, 1464, 1505
BstF5I	GGATG	5 cut(s)	412, 441, 463, 504, 1438
BstKTI	GATC	2 cut(s)	1246, 1360
BstMBI	GATC	2 cut(s)	1243, 1357
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 998, 1278
BstNI	CCWGG	2 cut(s)	1248, 1346
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	3 cut(s)	453, 1246, 1344
BstV1I	GCAGC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	1357
BstYI	RGATCY	1 cut(s)	1357
BstZ17I	GTATAC	1 cut(s)	726
Bsu36I	CCTNAGG	2 cut(s)	1145, 1464
BsuRI	GGCC	3 cut(s)	842, 1012, 1022
BtgZI	GCGATG	1 cut(s)	799
BtsCI	GGATG	5 cut(s)	412, 441, 463, 504, 1438
BtsI	GCAGTG	1 cut(s)	1263
BtsIMutI	CAGTG	4 cut(s)	891, 957, 1051, 1263
Cac8I	GCNNGC	2 cut(s)	162, 1014
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	5 cut(s)	200, 283, 746, 840, 1261
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	486, 889
CspCI	CAANNNNNGTGG	2 cut(s)	248, 283
CviAII	CATG	7 cut(s)	205, 249, 428, 545, 740, 767, 1113
CviQI	GTAC	2 cut(s)	486, 889
DdeI	CTNAG	6 cut(s)	380, 917, 1145, 1229, 1464, 1505
DpnI	GATC	2 cut(s)	1245, 1359
DpnII	GATC	2 cut(s)	1243, 1357
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	2 cut(s)	79, 147
Eco130I	CCWWGG	1 cut(s)	805
Eco32I	GATATC	1 cut(s)	683
Eco47I	GGWCC	4 cut(s)	200, 283, 746, 1261
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	2 cut(s)	1145, 1464
EcoO109I	RGGNCCY	2 cut(s)	200, 746
EcoRI	GAATTC	2 cut(s)	99, 361
EcoRII	CCWGG	2 cut(s)	1246, 1344
EcoRV	GATATC	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	7 cut(s)	208, 252, 431, 548, 743, 770, 1116
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	7 cut(s)	204, 248, 427, 544, 739, 766, 1112
FauNDI	CATATG	1 cut(s)	1240
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	5 cut(s)	419, 448, 470, 491, 1445
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	3 cut(s)	177, 806, 1265
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	1121
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	3 cut(s)	842, 1012, 1022
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	7 cut(s)	208, 252, 431, 548, 743, 770, 1116
HinfI	GANTC	5 cut(s)	107, 295, 398, 614, 1320
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	2 cut(s)	956, 1064
Hpy166II	GTNNAC	8 cut(s)	238, 270, 726, 889, 891, 947, 1204, 1514
Hpy188I	TCNGA	6 cut(s)	345, 654, 663, 871, 910, 1408
Hpy8I	GTNNAC	8 cut(s)	238, 270, 726, 889, 891, 947, 1204, 1514
HpyAV	CCTTC	8 cut(s)	48, 88, 220, 415, 510, 700, 737, 815
HpyCH4III	ACNGT	4 cut(s)	355, 563, 797, 1046
HpyCH4V	TGCA	9 cut(s)	182, 252, 259, 374, 427, 766, 955, 992, 1171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 998, 1278
HpyF3I	CTNAG	6 cut(s)	380, 917, 1145, 1229, 1464, 1505
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	7 cut(s)	208, 252, 431, 548, 743, 770, 1116
KflI	GGGWCCC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	1243, 1357
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	461, 590, 776, 787
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	6 cut(s)	426, 513, 822, 964, 1244, 1423
MaeI	CTAG	3 cut(s)	177, 806, 1265
MaeIII	GTNAC	1 cut(s)	1498
MalI	GATC	2 cut(s)	1245, 1359
MboI	GATC	2 cut(s)	1243, 1357
MboII	GAAGA	2 cut(s)	97, 690
MfeI	CAATTG	3 cut(s)	972, 993, 1207
MflI	RGATCY	1 cut(s)	1357
MhlI	GDGCHC	3 cut(s)	353, 626, 1126
MlsI	TGGCCA	1 cut(s)	1022
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	171, 1392
MnlI	CCTC	6 cut(s)	258, 1048, 1081, 1308, 1458, 1459
Mox20I	TGGCCA	1 cut(s)	1022
MroXI	GAANNNNTTC	1 cut(s)	1319
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	6 cut(s)	471, 540, 1041, 1302, 1395, 1418
MslI	CAYNNNNRTG	2 cut(s)	795, 1407
Msp20I	TGGCCA	1 cut(s)	1022
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	455, 1248, 1346
MunI	CAATTG	3 cut(s)	972, 993, 1207
Mva1269I	GAATGC	1 cut(s)	1402
MvaI	CCWGG	2 cut(s)	1248, 1346
MwoI	GCNNNNNNNGC	3 cut(s)	424, 998, 1278
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	1240
NdeII	GATC	2 cut(s)	1243, 1357
NlaIII	CATG	7 cut(s)	208, 252, 431, 548, 743, 770, 1116
NlaIV	GGNNCC	3 cut(s)	201, 202, 778
PagI	TCATGA	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	1402
PdmI	GAANNNNTTC	1 cut(s)	1319
PfeI	GAWTC	4 cut(s)	107, 398, 614, 1320
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PpuMI	RGGWCCY	2 cut(s)	200, 746
PshAI	GACNNNNGTC	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	1217
Psp5II	RGGWCCY	2 cut(s)	200, 746
Psp6I	CCWGG	2 cut(s)	1246, 1344
PspFI	CCCAGC	1 cut(s)	1117
PspGI	CCWGG	2 cut(s)	1246, 1344
PspN4I	GGNNCC	3 cut(s)	201, 202, 778
PspPI	GGNCC	5 cut(s)	200, 283, 746, 840, 1261
PspPPI	RGGWCCY	2 cut(s)	200, 746
PsuI	RGATCY	1 cut(s)	1357
RsaI	GTAC	2 cut(s)	487, 890
RsaNI	GTAC	2 cut(s)	486, 889
RseI	CAYNNNNRTG	2 cut(s)	795, 1407
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	6 cut(s)	471, 540, 1041, 1302, 1395, 1418
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	1243, 1357
Sau96I	GGNCC	5 cut(s)	200, 283, 746, 840, 1261
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	3 cut(s)	455, 1248, 1346
SduI	GDGCHC	3 cut(s)	353, 626, 1126
SfaNI	GCATC	6 cut(s)	426, 513, 822, 964, 1244, 1423
SinI	GGWCC	4 cut(s)	200, 283, 746, 1261
SmiMI	CAYNNNNRTG	2 cut(s)	795, 1407
SmlI	CTYRAG	1 cut(s)	1157
SmoI	CTYRAG	1 cut(s)	1157
SsiI	CCGC	4 cut(s)	64, 152, 158, 174
SspI	AATATT	1 cut(s)	883
SspMI	CTAG	3 cut(s)	177, 806, 1265
StyD4I	CCNGG	3 cut(s)	453, 1246, 1344
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	4 cut(s)	355, 563, 797, 1046
TaqI	TCGA	2 cut(s)	133, 1126
TatI	WGTACW	2 cut(s)	485, 888
TfiI	GAWTC	4 cut(s)	107, 398, 614, 1320
Tru1I	TTAA	6 cut(s)	471, 540, 1041, 1302, 1395, 1418
Tru9I	TTAA	6 cut(s)	471, 540, 1041, 1302, 1395, 1418
TscAI	CASTG	4 cut(s)	898, 957, 1051, 1263
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	8 cut(s)	318, 444, 456, 756, 916, 1101, 1236, 1470
TspRI	CASTG	4 cut(s)	898, 957, 1051, 1263
VpaK11BI	GGWCC	4 cut(s)	200, 283, 746, 1261
XapI	RAATTY	4 cut(s)	99, 328, 361, 1474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1381
XmaJI	CCTAGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	1319
XspI	CTAG	3 cut(s)	177, 806, 1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.