Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

51385234 .. 51389595

Gene Structure 4362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG349700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTATGCTGAGGAGGAGGTGGAGTATGGTCATTTGAGGGACATGGTTGGTGTTGTCGAGGACAAATTGGGAACAATGCCTTCTGCCCCTGAGTTTGTGTTGTGGCGAACACCGTTTTATGATGTGAAGAGCTTGAAGGGCATTCCTGATTCGTACAATGACTTTAATAAACTTCGGCTGCCAATAACCATGCCGCTTCCGCCAGCTACATTTTCCAGTAGTGCAATGGAGTTGGACTGGGGTCCTATGCCCACATTTACTGATTTGAAGGAGTTTGTAAACGCAAAGCCATGCAAAATGCAAGAGAGTTGGACTTCAATCAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTTAAAGGATCAACTCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCAGAATACACCAAGGACTGGAAATATCGATACATTGTTATGGTTGCTTTTGTTGATTTTTCACTTAACTGTTTTGGCTTTTGTATGTCTTGGTTCTGTTGCCACATAACACAACTTCGTTACTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

184

Amino Acids

21.11

Weight (kDa)

6.13

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	2 cut(s)	194, 200
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	136, 268, 318
AluBI	AGCT	2 cut(s)	132, 206
AluI	AGCT	2 cut(s)	132, 206
Alw21I	GWGCWC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	2 cut(s)	179, 194
BlsI	GCNGC	2 cut(s)	180, 195
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
Bpu10I	CCTNAGC	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse1I	ACTGG	3 cut(s)	216, 242, 446
Bse3DI	GCAATG	2 cut(s)	231, 343
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	2 cut(s)	231, 343
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	216, 242, 446
BseRI	GAGGAG	3 cut(s)	26, 29, 421
BseXI	GCAGC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	194, 200
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	231, 343
BsrI	ACTGG	3 cut(s)	216, 242, 446
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	114, 494, 548
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	9, 90
BstKTI	GATC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 199
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	43, 190, 291
CviJI	RGCY	5 cut(s)	132, 178, 206, 289, 501
CviKI_1	RGCY	5 cut(s)	132, 178, 206, 289, 501
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	9, 90
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	3 cut(s)	46, 193, 294
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	42, 189, 290
Fnu4HI	GCNGC	2 cut(s)	179, 194
Fsp4HI	GCNGC	2 cut(s)	179, 194
GluI	GCNGC	2 cut(s)	179, 194
Hin1II	CATG	3 cut(s)	46, 193, 294
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	4 cut(s)	90, 130, 262, 344
HpyCH4III	ACNGT	3 cut(s)	114, 494, 548
HpyCH4V	TGCA	4 cut(s)	224, 294, 301, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 199
HpyF3I	CTNAG	2 cut(s)	9, 90
Hsp92II	CATG	3 cut(s)	46, 193, 294
Kzo9I	GATC	1 cut(s)	386
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	8 cut(s)	102, 159, 216, 223, 229, 351, 427, 438
Lsp1109I	GCAGC	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	3 cut(s)	65, 328, 550
MmeI	TCCRAC	2 cut(s)	213, 290
MnlI	CCTC	6 cut(s)	4, 7, 10, 30, 52, 399
MseI	TTAA	4 cut(s)	165, 381, 489, 553
MslI	CAYNNNNRTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	138, 199
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	46, 193, 294
NlaIV	GGNNCC	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	180, 195
PpuMI	RGGWCCY	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	4 cut(s)	165, 381, 489, 553
SatI	GCNGC	2 cut(s)	179, 194
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	5 cut(s)	21, 134, 208, 327, 355
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	65, 328, 550
SsiI	CCGC	2 cut(s)	194, 200
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	114, 494, 548
TaqI	TCGA	2 cut(s)	57, 451
TasI	AATT	3 cut(s)	65, 328, 550
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	165, 381, 489, 553
Tru9I	TTAA	4 cut(s)	165, 381, 489, 553
TseI	GCWGC	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.