Rh1DG392200

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005426
Physical Location & Seq
Reverse (-)
61059650 .. 61060245
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG392200.1

Sequence Viewer

Length: 345 bp
ATGGCTTCACTCTTCACTCTCCAACACTCTCCCTCGCCTTCCTTCTCCCCAAGAACCCACCTTTACTCGCCGAAACGGTGCCGTTTCCGAGCTCAAATTTCAGTCAACGGCGGAGCGAAGACCGGCGCCGCCGTCGTTTGGCTGAAGCACGACCTCCGAATCGACGATCATCCAGCTCTTCTCGCCGCCGCTAATCACTCCGGAGCTATTCCTCTCTATGTCTTCGACCACCGTATTCTCTCCCGTTTTGAAGACGAAATGCTGGAAATGGTTGCGGTTGCTTTAGAAGATTTGAGAAACTCGTTGAGAGATAAAGGTTCGGGTTGTGAGCACCGTGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

8.58

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 44 - 107 1.7e-12 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 125
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 5 cut(s) 111, 129, 186, 189, 275
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 3 cut(s) 92, 176, 206
AluI AGCT 3 cut(s) 92, 176, 206
Alw21I GWGCWC 2 cut(s) 94, 333
Aor13HI TCCGGA 1 cut(s) 200
ApoI RAATTY 1 cut(s) 96
AspLEI GCGC 1 cut(s) 128
BanI GGYRCC 2 cut(s) 78, 125
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 3 cut(s) 125, 214, 258
Bbv12I GWGCWC 2 cut(s) 94, 333
BceAI ACGGC 3 cut(s) 66, 116, 124
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 3 cut(s) 129, 186, 189
BlsI GCNGC 3 cut(s) 130, 187, 190
BmiI GGNNCC 2 cut(s) 80, 127
BpiI GAAGAC 3 cut(s) 125, 214, 258
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 200
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 138
BshNI GGYRCC 2 cut(s) 78, 125
BsiHKAI GWGCWC 2 cut(s) 94, 333
BsiSI CCGG 2 cut(s) 123, 201
BslI CCNNNNNNNGG 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 94, 333
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 5 cut(s) 111, 129, 186, 189, 275
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 80, 127
BspQI GCTCTTC 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 78, 125
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 78, 233, 335
Bst6I CTCTTC 2 cut(s) 17, 183
BstACI GRCGYC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV2I GAAGAC 3 cut(s) 125, 214, 258
BtsCI GGATG 1 cut(s) 169
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 122
CviJI RGCY 5 cut(s) 5, 92, 142, 176, 206
CviKI_1 RGCY 5 cut(s) 5, 92, 142, 176, 206
DinI GGCGCC 1 cut(s) 127
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 17, 183
EarI CTCTTC 2 cut(s) 17, 183
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
FaiI YATR 2 cut(s) 219, 340
Fnu4HI GCNGC 3 cut(s) 129, 186, 189
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 129, 186, 189
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 129, 186, 189
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 2 cut(s) 123, 201
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 123, 201
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 89, 158
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 137, 167
HpyAV CCTTC 2 cut(s) 48, 52
HpyCH4III ACNGT 3 cut(s) 78, 233, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 126
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 113, 203
LpnPI CCDG 4 cut(s) 136, 186, 214, 248
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 6 cut(s) 4, 130, 170, 214, 263, 299
MhlI GDGCHC 2 cut(s) 94, 333
MluCI AATT 1 cut(s) 96
Mly113I GGCGCC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 3 cut(s) 43, 164, 222
MroI TCCGGA 1 cut(s) 200
MspI CCGG 2 cut(s) 123, 201
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 126
NdeII GATC 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 80, 127
PciSI GCTCTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 130, 187, 190
PluTI GGCGCC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 80, 127
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 183
SatI GCNGC 3 cut(s) 129, 186, 189
Sau3AI GATC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 94, 333
SetI ASST 6 cut(s) 63, 94, 156, 178, 208, 319
SfoI GGCGCC 1 cut(s) 127
Sse9I AATT 1 cut(s) 96
SsiI CCGC 5 cut(s) 111, 129, 186, 189, 275
SspDI GGCGCC 1 cut(s) 125
SstI GAGCTC 1 cut(s) 94
TaaI ACNGT 3 cut(s) 78, 233, 335
TaqI TCGA 2 cut(s) 162, 225
TasI AATT 1 cut(s) 96
TauI GCSGC 3 cut(s) 131, 188, 191
TfiI GAWTC 1 cut(s) 159
XapI RAATTY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.