Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

28302520 .. 28303848

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1183900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAAGAAACGGTTTTGATTGCTTTGCAAGATTTGAGAAACTCGTTGAAGGATAAAGGTGTTCAGTTTGTTAGTACGGTATATGCCGAGGAGGAGGTGGAGTATGGCTTAAGGAATATGACTGATAGTGTCAGGGACACCTTGGCGGCAATGCGGTCTTCCCCCAAGTTTGTGCTGTGGCAGTCTCCGTTTTATGATGTGAAGAGCTTGAAGGGTATTCCAGATTCATACGATGAATTTACCAAACTTAGATTGCCTGTAACTTTGCCACTGTCTTCCGCAACATTAACTGGTCGAAACATGGAAGTGGATTGGGGTAAGAGTTCCCATATTGTTAATGCTTCTGCTTATACTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

5.34

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	146, 154, 279
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	49, 211
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	150, 267
BcoDI	GTCTC	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BpiI	GAAGAC	2 cut(s)	150, 267
BsaJI	CCNNGG	2 cut(s)	87, 141
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	87, 141
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	104, 107
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	146, 154, 279
BspQI	GCTCTTC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	87, 141
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	13, 79, 273
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	189
BstV2I	GAAGAC	2 cut(s)	150, 267
BtsIMutI	CAGTG	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	2 cut(s)	108, 207
CviKI_1	RGCY	2 cut(s)	108, 207
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	304
FaiI	YATR	9 cut(s)	82, 84, 105, 119, 195, 229, 302, 330, 351
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	1 cut(s)	224
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	43, 205
HpyCH4III	ACNGT	3 cut(s)	13, 79, 273
HpyCH4V	TGCA	2 cut(s)	4, 28
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	118, 234, 270, 276
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	150, 214, 267
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	3 cut(s)	82, 85, 88
MseI	TTAA	3 cut(s)	110, 287, 336
MslI	CAYNNNNRTG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	109
NlaIII	CATG	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	110, 287, 336
SatI	GCNGC	1 cut(s)	147
SetI	ASST	4 cut(s)	61, 99, 143, 209
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	146, 154, 279
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	13, 79, 273
TaqI	TCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	110, 287, 336
Tru9I	TTAA	3 cut(s)	110, 287, 336
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	2 cut(s)	216, 249
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.