DNA photolyase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25290 |
| fragaria_vesca | FvH4_7g27950 FvH4_7g27950 FvH4_7g27950 |
| malus_domestica | MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1 |
| prunus_persica | Prupe.2G280600_v2.0.a1 |
| pyrus_communis | pycom01g19600 |
| rosa_chinensis | RchiOBHm_Chr1g0374901 |
| rosa_laevigata | RLG00000026708 |
| rosa_multiflora | Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034 |
| rosa_roxburghii | Rroxscaffold_4G00283190 Rroxscaffold_7G00197970 |
| rosa_rugosa | Rorug01G0385700 Rorug01G0385800 |
| rosa_samantha | Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500 |
| rosa_wichuraiana | Rw1G006600 Rw1G035230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 78, 452 |
| AccI | GTMKAC | 2 cut(s) | 1244, 1407 |
| AciI | CCGC | 6 cut(s) | 61, 101, 186, 496, 759, 1110 |
| AclWI | GGATC | 3 cut(s) | 930, 1760, 1871 |
| AcoI | YGGCCR | 1 cut(s) | 1539 |
| AcsI | RAATTY | 4 cut(s) | 747, 823, 1649, 1993 |
| AfaI | GTAC | 5 cut(s) | 218, 545, 942, 1041, 1863 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 138 |
| AflII | CTTAAG | 1 cut(s) | 1666 |
| AflIII | ACRYGT | 1 cut(s) | 793 |
| AgsI | TTSAA | 9 cut(s) | 88, 526, 658, 708, 754, 877, 1049, 1454, 1807 |
| AjnI | CCWGG | 3 cut(s) | 798, 1582, 1768 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1339, 1371, 1873, 1905 |
| AluBI | AGCT | 9 cut(s) | 92, 300, 367, 562, 881, 1052, 1709, 1803, 2049 |
| AluI | AGCT | 9 cut(s) | 92, 300, 367, 562, 881, 1052, 1709, 1803, 2049 |
| Alw21I | GWGCWC | 1 cut(s) | 1145 |
| Alw26I | GTCTC | 2 cut(s) | 808, 2025 |
| AlwI | GGATC | 3 cut(s) | 930, 1760, 1871 |
| Ama87I | CYCGRG | 1 cut(s) | 251 |
| AoxI | GGCC | 5 cut(s) | 3, 120, 1359, 1529, 1539 |
| ApeKI | GCWGC | 3 cut(s) | 887, 2028, 2046 |
| ApoI | RAATTY | 4 cut(s) | 747, 823, 1649, 1993 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 732, 1621 |
| AspLEI | GCGC | 3 cut(s) | 358, 478, 1928 |
| AspS9I | GGNCC | 5 cut(s) | 802, 1001, 1265, 1359, 1783 |
| AsuHPI | GGTGA | 6 cut(s) | 60, 97, 161, 379, 623, 1475 |
| AsuII | TTCGAA | 2 cut(s) | 157, 320 |
| AvaI | CYCGRG | 1 cut(s) | 251 |
| AvaII | GGWCC | 4 cut(s) | 802, 1001, 1265, 1783 |
| BaeGI | GKGCMC | 1 cut(s) | 455 |
| BalI | TGGCCA | 1 cut(s) | 1541 |
| BanI | GGYRCC | 2 cut(s) | 78, 452 |
| BauI | CACGAG | 1 cut(s) | 818 |
| BbsI | GAAGAC | 2 cut(s) | 1083, 1268 |
| Bbv12I | GWGCWC | 1 cut(s) | 1145 |
| BbvCI | CCTCAGC | 1 cut(s) | 402 |
| BbvI | GCAGC | 2 cut(s) | 874, 2040 |
| BccI | CCATC | 2 cut(s) | 1215, 1832 |
| BceAI | ACGGC | 3 cut(s) | 66, 116, 188 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 137, 171, 562, 596 |
| BciT130I | CCWGG | 3 cut(s) | 800, 1584, 1770 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcoDI | GTCTC | 2 cut(s) | 808, 2025 |
| BfaI | CTAG | 4 cut(s) | 1272, 1626, 1640, 1787 |
| BfrI | CTTAAG | 1 cut(s) | 1666 |
| BisI | GCNGC | 4 cut(s) | 186, 888, 2029, 2047 |
| BlsI | GCNGC | 4 cut(s) | 187, 889, 2030, 2048 |
| Bme1390I | CCNGG | 3 cut(s) | 800, 1584, 1770 |
| Bme18I | GGWCC | 4 cut(s) | 802, 1001, 1265, 1783 |
| BmeT110I | CYCGRG | 1 cut(s) | 251 |
| BmgT120I | GGNCC | 5 cut(s) | 802, 1001, 1265, 1359, 1783 |
| BmiI | GGNNCC | 3 cut(s) | 80, 454, 1297 |
| BmrFI | CCNGG | 3 cut(s) | 800, 1584, 1770 |
| BmrI | ACTGGG | 1 cut(s) | 637 |
| BmsI | GCATC | 6 cut(s) | 100, 243, 942, 1483, 1766, 1942 |
| BmuI | ACTGGG | 1 cut(s) | 637 |
| BpiI | GAAGAC | 2 cut(s) | 1083, 1268 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| Bpu14I | TTCGAA | 2 cut(s) | 157, 320 |
| BpuEI | CTTGAG | 2 cut(s) | 1040, 1664 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1105 |
| BsaJI | CCNNGG | 2 cut(s) | 456, 1769 |
| BsaWI | WCCGGW | 1 cut(s) | 2038 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 138 |
| Bse118I | RCCGGY | 2 cut(s) | 122, 1955 |
| Bse1I | ACTGG | 6 cut(s) | 442, 610, 632, 805, 935, 1469 |
| Bse3DI | GCAATG | 4 cut(s) | 471, 1332, 1921, 1960 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1105 |
| BseBI | CCWGG | 3 cut(s) | 800, 1584, 1770 |
| BseDI | CCNNGG | 2 cut(s) | 456, 1769 |
| BseGI | GGATG | 4 cut(s) | 957, 1106, 1843, 1957 |
| BseJI | GATNNNNATC | 1 cut(s) | 1105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BseMI | GCAATG | 4 cut(s) | 471, 1332, 1921, 1960 |
| BseMII | CTCAG | 3 cut(s) | 339, 393, 2015 |
| BseNI | ACTGG | 6 cut(s) | 442, 610, 632, 805, 935, 1469 |
| BseRI | GAGGAG | 3 cut(s) | 419, 422, 1862 |
| BseSI | GKGCMC | 1 cut(s) | 455 |
| BseXI | GCAGC | 2 cut(s) | 874, 2040 |
| BseYI | CCCAGC | 3 cut(s) | 172, 337, 1928 |
| BshFI | GGCC | 5 cut(s) | 5, 122, 1361, 1531, 1541 |
| BshNI | GGYRCC | 2 cut(s) | 78, 452 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1145 |
| BsiHKCI | CYCGRG | 1 cut(s) | 251 |
| BsiSI | CCGG | 4 cut(s) | 123, 593, 1956, 2039 |
| BslFI | GGGAC | 2 cut(s) | 874, 1802 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BsmAI | GTCTC | 2 cut(s) | 808, 2025 |
| BsmFI | GGGAC | 2 cut(s) | 874, 1802 |
| BsmI | GAATGC | 1 cut(s) | 1020 |
| BsnI | GGCC | 5 cut(s) | 5, 122, 1361, 1531, 1541 |
| BsoBI | CYCGRG | 1 cut(s) | 251 |
| Bsp119I | TTCGAA | 2 cut(s) | 157, 320 |
| Bsp1286I | GDGCHC | 2 cut(s) | 455, 1145 |
| Bsp1407I | TGTACA | 2 cut(s) | 216, 1861 |
| Bsp143I | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| BspACI | CCGC | 6 cut(s) | 61, 101, 186, 496, 759, 1110 |
| BspANI | GGCC | 5 cut(s) | 5, 122, 1361, 1531, 1541 |
| BspCNI | CTCAG | 3 cut(s) | 340, 394, 2016 |
| BspHI | TCATGA | 2 cut(s) | 738, 1258 |
| BspLI | GGNNCC | 3 cut(s) | 80, 454, 1297 |
| BspPI | GGATC | 3 cut(s) | 930, 1760, 1871 |
| BspT104I | TTCGAA | 2 cut(s) | 157, 320 |
| BspT107I | GGYRCC | 2 cut(s) | 78, 452 |
| BspTI | CTTAAG | 1 cut(s) | 1666 |
| BsrDI | GCAATG | 4 cut(s) | 471, 1332, 1921, 1960 |
| BsrFI | RCCGGY | 2 cut(s) | 122, 1955 |
| BsrGI | TGTACA | 2 cut(s) | 216, 1861 |
| BsrI | ACTGG | 6 cut(s) | 442, 610, 632, 805, 935, 1469 |
| BssAI | RCCGGY | 2 cut(s) | 122, 1955 |
| BssECI | CCNNGG | 2 cut(s) | 456, 1769 |
| BssMI | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| BssNAI | GTATAC | 2 cut(s) | 1245, 1408 |
| BssSI | CACGAG | 1 cut(s) | 818 |
| BssT1I | CCWWGG | 1 cut(s) | 456 |
| Bst1107I | GTATAC | 2 cut(s) | 1245, 1408 |
| Bst2BI | CACGAG | 1 cut(s) | 818 |
| Bst2UI | CCWGG | 3 cut(s) | 800, 1584, 1770 |
| Bst4CI | ACNGT | 7 cut(s) | 78, 394, 1117, 1129, 1249, 1316, 1565 |
| Bst6I | CTCTTC | 2 cut(s) | 512, 687 |
| BstAFI | CTTAAG | 1 cut(s) | 1666 |
| BstAUI | TGTACA | 2 cut(s) | 216, 1861 |
| BstBI | TTCGAA | 2 cut(s) | 157, 320 |
| BstC8I | GCNNGC | 4 cut(s) | 124, 279, 759, 1533 |
| BstDEI | CTNAG | 5 cut(s) | 348, 402, 1436, 1751, 2024 |
| BstEII | GGTNACC | 1 cut(s) | 103 |
| BstF5I | GGATG | 4 cut(s) | 957, 1106, 1843, 1957 |
| BstHHI | GCGC | 3 cut(s) | 358, 478, 1928 |
| BstKTI | GATC | 6 cut(s) | 169, 229, 333, 925, 1768, 1879 |
| BstMAI | GTCTC | 2 cut(s) | 808, 2025 |
| BstMBI | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| BstNI | CCWGG | 3 cut(s) | 800, 1584, 1770 |
| BstNSI | RCATGY | 1 cut(s) | 797 |
| BstPI | GGTNACC | 1 cut(s) | 103 |
| BstSCI | CCNGG | 3 cut(s) | 798, 1582, 1768 |
| BstSLI | GKGCMC | 1 cut(s) | 455 |
| BstV1I | GCAGC | 2 cut(s) | 874, 2040 |
| BstV2I | GAAGAC | 2 cut(s) | 1083, 1268 |
| BstX2I | RGATCY | 1 cut(s) | 1876 |
| BstYI | RGATCY | 1 cut(s) | 1876 |
| BstZ17I | GTATAC | 2 cut(s) | 1245, 1408 |
| BsuRI | GGCC | 5 cut(s) | 5, 122, 1361, 1531, 1541 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 4 cut(s) | 957, 1106, 1843, 1957 |
| BtsI | GCAGTG | 1 cut(s) | 1785 |
| BtsIMutI | CAGTG | 6 cut(s) | 390, 1143, 1410, 1476, 1570, 1785 |
| Cac8I | GCNNGC | 4 cut(s) | 124, 279, 759, 1533 |
| CciI | TCATGA | 2 cut(s) | 738, 1258 |
| CfoI | GCGC | 3 cut(s) | 358, 478, 1928 |
| Cfr10I | RCCGGY | 2 cut(s) | 122, 1955 |
| Cfr13I | GGNCC | 5 cut(s) | 802, 1001, 1265, 1359, 1783 |
| Csp6I | GTAC | 5 cut(s) | 217, 544, 941, 1040, 1862 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1549, 1584 |
| CviAII | CATG | 7 cut(s) | 681, 739, 794, 944, 1259, 1286, 1635 |
| CviQI | GTAC | 5 cut(s) | 217, 544, 941, 1040, 1862 |
| DdeI | CTNAG | 5 cut(s) | 348, 402, 1436, 1751, 2024 |
| DpnI | GATC | 6 cut(s) | 168, 228, 332, 924, 1767, 1878 |
| DpnII | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| EaeI | YGGCCR | 1 cut(s) | 1539 |
| Eam1104I | CTCTTC | 2 cut(s) | 512, 687 |
| EarI | CTCTTC | 2 cut(s) | 512, 687 |
| EciI | GGCGGA | 1 cut(s) | 511 |
| Eco130I | CCWWGG | 1 cut(s) | 456 |
| Eco32I | GATATC | 1 cut(s) | 1202 |
| Eco47I | GGWCC | 4 cut(s) | 802, 1001, 1265, 1783 |
| Eco88I | CYCGRG | 1 cut(s) | 251 |
| Eco91I | GGTNACC | 1 cut(s) | 103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1265 |
| EcoO65I | GGTNACC | 1 cut(s) | 103 |
| EcoRI | GAATTC | 2 cut(s) | 823, 1993 |
| EcoRII | CCWGG | 3 cut(s) | 798, 1582, 1768 |
| EcoRV | GATATC | 1 cut(s) | 1202 |
| EcoT14I | CCWWGG | 1 cut(s) | 456 |
| ErhI | CCWWGG | 1 cut(s) | 456 |
| FaeI | CATG | 7 cut(s) | 684, 742, 797, 947, 1262, 1289, 1638 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 366, 398, 440, 472, 940, 972 |
| FaqI | GGGAC | 2 cut(s) | 874, 1802 |
| FatI | CATG | 7 cut(s) | 680, 738, 793, 943, 1258, 1285, 1634 |
| FauI | CCCGC | 1 cut(s) | 766 |
| FauNDI | CATATG | 2 cut(s) | 1325, 1762 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| FblI | GTMKAC | 2 cut(s) | 1244, 1407 |
| Fnu4HI | GCNGC | 4 cut(s) | 186, 888, 2029, 2047 |
| FokI | GGATG | 4 cut(s) | 964, 1093, 1850, 1964 |
| Fsp4HI | GCNGC | 4 cut(s) | 186, 888, 2029, 2047 |
| FspBI | CTAG | 4 cut(s) | 1272, 1626, 1640, 1787 |
| GlaI | GCGC | 3 cut(s) | 357, 477, 1927 |
| GluI | GCNGC | 4 cut(s) | 186, 888, 2029, 2047 |
| GsaI | CCCAGC | 3 cut(s) | 176, 341, 1932 |
| HaeIII | GGCC | 5 cut(s) | 5, 122, 1361, 1531, 1541 |
| HapII | CCGG | 4 cut(s) | 123, 593, 1956, 2039 |
| HhaI | GCGC | 3 cut(s) | 358, 478, 1928 |
| Hin1II | CATG | 7 cut(s) | 684, 742, 797, 947, 1262, 1289, 1638 |
| Hin6I | GCGC | 3 cut(s) | 356, 476, 1926 |
| HinP1I | GCGC | 3 cut(s) | 356, 476, 1926 |
| HincII | GTYRAC | 3 cut(s) | 723, 1674, 1726 |
| HindII | GTYRAC | 3 cut(s) | 723, 1674, 1726 |
| HindIII | AAGCTT | 2 cut(s) | 560, 879 |
| HinfI | GANTC | 9 cut(s) | 159, 499, 539, 1076, 1133, 1675, 1842, 1889, 2018 |
| HpaII | CCGG | 4 cut(s) | 123, 593, 1956, 2039 |
| HphI | GGTGA | 6 cut(s) | 60, 97, 161, 379, 623, 1475 |
| Hpy166II | GTNNAC | 6 cut(s) | 723, 1245, 1408, 1466, 1674, 1726 |
| Hpy188I | TCNGA | 5 cut(s) | 972, 1182, 1390, 1888, 2025 |
| Hpy188III | TCNNGA | 7 cut(s) | 251, 536, 739, 1029, 1080, 1259, 2006 |
| Hpy8I | GTNNAC | 6 cut(s) | 723, 1245, 1408, 1466, 1674, 1726 |
| Hpy99I | CGWCG | 3 cut(s) | 137, 167, 1976 |
| HpyCH4III | ACNGT | 7 cut(s) | 78, 394, 1117, 1129, 1249, 1316, 1565 |
| HpyCH4IV | ACGT | 2 cut(s) | 644, 844 |
| HpyCH4V | TGCA | 6 cut(s) | 113, 684, 890, 1337, 1474, 1511 |
| HpyF3I | CTNAG | 5 cut(s) | 348, 402, 1436, 1751, 2024 |
| HpySE526I | ACGT | 2 cut(s) | 644, 844 |
| Hsp92II | CATG | 7 cut(s) | 684, 742, 797, 947, 1262, 1289, 1638 |
| HspAI | GCGC | 3 cut(s) | 356, 476, 1926 |
| KroI | GCCGGC | 1 cut(s) | 122 |
| KroNI | GCCGGC | 1 cut(s) | 124 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| Kzo9I | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| LmnI | GCTCC | 2 cut(s) | 1295, 1306 |
| Lsp1109I | GCAGC | 2 cut(s) | 874, 2040 |
| LweI | GCATC | 6 cut(s) | 100, 243, 942, 1483, 1766, 1942 |
| MaeI | CTAG | 4 cut(s) | 1272, 1626, 1640, 1787 |
| MaeII | ACGT | 2 cut(s) | 644, 844 |
| MaeIII | GTNAC | 4 cut(s) | 13, 103, 385, 1316 |
| MalI | GATC | 6 cut(s) | 168, 228, 332, 924, 1767, 1878 |
| MboI | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| MboII | GAAGA | 9 cut(s) | 214, 529, 704, 777, 1083, 1209, 1268, 1629, 1705 |
| MfeI | CAATTG | 3 cut(s) | 1491, 1512, 1729 |
| MflI | RGATCY | 1 cut(s) | 1876 |
| MhlI | GDGCHC | 2 cut(s) | 455, 1145 |
| MlsI | TGGCCA | 1 cut(s) | 1541 |
| MluNI | TGGCCA | 1 cut(s) | 1541 |
| MlyI | GAGTC | 3 cut(s) | 493, 1669, 2027 |
| MmeI | TCCRAC | 2 cut(s) | 950, 1196 |
| Mox20I | TGGCCA | 1 cut(s) | 1541 |
| MroNI | GCCGGC | 1 cut(s) | 122 |
| MroXI | GAANNNNTTC | 2 cut(s) | 732, 1621 |
| MscI | TGGCCA | 1 cut(s) | 1541 |
| MseI | TTAA | 5 cut(s) | 143, 602, 1667, 1914, 2052 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1314 |
| Msp20I | TGGCCA | 1 cut(s) | 1541 |
| MspCI | CTTAAG | 1 cut(s) | 1666 |
| MspI | CCGG | 4 cut(s) | 123, 593, 1956, 2039 |
| MspR9I | CCNGG | 3 cut(s) | 800, 1584, 1770 |
| MunI | CAATTG | 3 cut(s) | 1491, 1512, 1729 |
| Mva1269I | GAATGC | 1 cut(s) | 1020 |
| MvaI | CCWGG | 3 cut(s) | 800, 1584, 1770 |
| NaeI | GCCGGC | 1 cut(s) | 124 |
| NdeI | CATATG | 2 cut(s) | 1325, 1762 |
| NdeII | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| NgoMIV | GCCGGC | 1 cut(s) | 122 |
| NlaIII | CATG | 7 cut(s) | 684, 742, 797, 947, 1262, 1289, 1638 |
| NlaIV | GGNNCC | 3 cut(s) | 80, 454, 1297 |
| NmuCI | GTSAC | 4 cut(s) | 13, 103, 385, 1316 |
| NspI | RCATGY | 1 cut(s) | 797 |
| NspV | TTCGAA | 2 cut(s) | 157, 320 |
| PagI | TCATGA | 2 cut(s) | 738, 1258 |
| PciI | ACATGT | 1 cut(s) | 793 |
| PctI | GAATGC | 1 cut(s) | 1020 |
| PdiI | GCCGGC | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 2 cut(s) | 732, 1621 |
| PfeI | GAWTC | 6 cut(s) | 159, 539, 1076, 1133, 1842, 1889 |
| PfoI | TCCNGGA | 1 cut(s) | 1582 |
| PkrI | GCNGC | 4 cut(s) | 187, 889, 2030, 2048 |
| PleI | GAGTC | 3 cut(s) | 493, 1669, 2026 |
| PpsI | GAGTC | 3 cut(s) | 493, 1669, 2026 |
| PpuMI | RGGWCCY | 1 cut(s) | 1265 |
| PscI | ACATGT | 1 cut(s) | 793 |
| Psp5II | RGGWCCY | 1 cut(s) | 1265 |
| Psp6I | CCWGG | 3 cut(s) | 798, 1582, 1768 |
| PspEI | GGTNACC | 1 cut(s) | 103 |
| PspFI | CCCAGC | 3 cut(s) | 172, 337, 1928 |
| PspGI | CCWGG | 3 cut(s) | 798, 1582, 1768 |
| PspN4I | GGNNCC | 3 cut(s) | 80, 454, 1297 |
| PspPI | GGNCC | 5 cut(s) | 802, 1001, 1265, 1359, 1783 |
| PspPPI | RGGWCCY | 1 cut(s) | 1265 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 363, 395 |
| PsuI | RGATCY | 1 cut(s) | 1876 |
| RsaI | GTAC | 5 cut(s) | 218, 545, 942, 1041, 1863 |
| RsaNI | GTAC | 5 cut(s) | 217, 544, 941, 1040, 1862 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1314 |
| SaqAI | TTAA | 5 cut(s) | 143, 602, 1667, 1914, 2052 |
| SatI | GCNGC | 4 cut(s) | 186, 888, 2029, 2047 |
| Sau3AI | GATC | 6 cut(s) | 166, 226, 330, 922, 1765, 1876 |
| Sau96I | GGNCC | 5 cut(s) | 802, 1001, 1265, 1359, 1783 |
| SchI | GAGTC | 3 cut(s) | 493, 1669, 2027 |
| ScrFI | CCNGG | 3 cut(s) | 800, 1584, 1770 |
| SduI | GDGCHC | 2 cut(s) | 455, 1145 |
| SfaNI | GCATC | 6 cut(s) | 100, 243, 942, 1483, 1766, 1942 |
| SfuI | TTCGAA | 2 cut(s) | 157, 320 |
| SinI | GGWCC | 4 cut(s) | 802, 1001, 1265, 1783 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1314 |
| SmlI | CTYRAG | 3 cut(s) | 1055, 1666, 1679 |
| SmoI | CTYRAG | 3 cut(s) | 1055, 1666, 1679 |
| SsiI | CCGC | 6 cut(s) | 61, 101, 186, 496, 759, 1110 |
| SspMI | CTAG | 4 cut(s) | 1272, 1626, 1640, 1787 |
| StyD4I | CCNGG | 3 cut(s) | 798, 1582, 1768 |
| StyI | CCWWGG | 1 cut(s) | 456 |
| TaaI | ACNGT | 7 cut(s) | 78, 394, 1117, 1129, 1249, 1316, 1565 |
| TaiI | ACGT | 2 cut(s) | 647, 847 |
| TaqI | TCGA | 7 cut(s) | 157, 162, 225, 320, 565, 782, 1845 |
| TatI | WGTACW | 3 cut(s) | 216, 1039, 1861 |
| TauI | GCSGC | 1 cut(s) | 188 |
| TfiI | GAWTC | 6 cut(s) | 159, 539, 1076, 1133, 1842, 1889 |
| Tru1I | TTAA | 5 cut(s) | 143, 602, 1667, 1914, 2052 |
| Tru9I | TTAA | 5 cut(s) | 143, 602, 1667, 1914, 2052 |
| TscAI | CASTG | 6 cut(s) | 397, 1143, 1417, 1476, 1570, 1785 |
| TseFI | GTSAC | 4 cut(s) | 13, 103, 385, 1316 |
| TseI | GCWGC | 3 cut(s) | 887, 2028, 2046 |
| Tsp45I | GTSAC | 4 cut(s) | 13, 103, 385, 1316 |
| TspGWI | ACGGA | 1 cut(s) | 492 |
| TspRI | CASTG | 6 cut(s) | 397, 1143, 1417, 1476, 1570, 1785 |
| Vha464I | CTTAAG | 1 cut(s) | 1666 |
| VpaK11BI | GGWCC | 4 cut(s) | 802, 1001, 1265, 1783 |
| XapI | RAATTY | 4 cut(s) | 747, 823, 1649, 1993 |
| XceI | RCATGY | 1 cut(s) | 797 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1900 |
| XmiI | GTMKAC | 2 cut(s) | 1244, 1407 |
| XmnI | GAANNNNTTC | 2 cut(s) | 732, 1621 |
| XspI | CTAG | 4 cut(s) | 1272, 1626, 1640, 1787 |