Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Forward (+)

42674679 .. 42678008

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCACGCGATCGTATCGACGAGCTCTACAACTTTCATGAAGGAAGTTTTCCCAAATTCCGTAAGTTTTGAAGACGAAATGCTGGAAATGGTTGTCGTTGCTTTAGAAGATTTGAGAAACTCGTTGAGAGATAAAGGTACGAACTTGATGGTGAGGTTTGGGAATGCAGAGAATGTGATACAAGAGATTGTAGAAAAGGTTCGGGTTGTGAGCACTATGTATGCTGAGGAGGAGGTGGAGTATGGTTTGAGGGACATGAGCTTGAAGGGCATTCCTGATTCGTACAATGACTTTAATAAACTTCGGCTGCCAATAACCATGCCGCTTCCGCTAGCTACATTTTCCGGTAGTGCAATGGAGTTGGACTGGGGTCCTATGCCCACATTTAATGATTTGAAGGAGTTTGTAAACGCAAAGCCATGCAAAATGCAAGAGAGCTGGACTTCAATCAAGGGCATTATCCCTTGCTGCAAGGGTTTTGATCATGTTCATATGCAGTTTAACTCTTGTATGTTTGTAAATGAATTCACTCGAGTGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTTAAAGGATCAACTGCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCAGAATACACCAAGGACTGGAAACTCAAGTTACAAGTATTTTTATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

229

Amino Acids

25.73

Weight (kDa)

5.19

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	323, 329
AclWI	GGATC	1 cut(s)	607
AcsI	RAATTY	3 cut(s)	55, 524, 541
AfaI	GTAC	2 cut(s)	139, 284
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	4 cut(s)	71, 265, 397, 447
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	4 cut(s)	24, 261, 335, 438
AluI	AGCT	4 cut(s)	24, 261, 335, 438
Alw21I	GWGCWC	3 cut(s)	26, 215, 627
AlwI	GGATC	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	307, 468
ApoI	RAATTY	3 cut(s)	55, 524, 541
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	3 cut(s)	26, 215, 627
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	294, 455
BccI	CCATC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	481
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	3 cut(s)	308, 323, 469
BlsI	GCNGC	3 cut(s)	309, 324, 470
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	376
BoxI	GACNNNNGTC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	649
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	371, 660
Bse3DI	GCAATG	2 cut(s)	360, 556
BseDI	CCNNGG	1 cut(s)	649
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	2 cut(s)	360, 556
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	371, 660
BseRI	GAGGAG	3 cut(s)	242, 245, 635
BseXI	GCAGC	2 cut(s)	294, 455
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	3 cut(s)	26, 215, 627
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	2 cut(s)	169, 270
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	3 cut(s)	26, 215, 627
Bsp143I	GATC	3 cut(s)	9, 481, 599
BspACI	CCGC	2 cut(s)	323, 329
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	372
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	360, 556
BsrI	ACTGG	2 cut(s)	371, 660
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	3 cut(s)	9, 481, 599
BssT1I	CCWWGG	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	6, 333
BstDEI	CTNAG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	12, 484, 602
BstMBI	GATC	3 cut(s)	9, 481, 599
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 328
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	294, 455
BstV2I	GAAGAC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	6, 333
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	138, 283
CviAII	CATG	5 cut(s)	37, 256, 319, 420, 485
CviJI	RGCY	6 cut(s)	24, 261, 307, 335, 418, 438
CviKI_1	RGCY	6 cut(s)	24, 261, 307, 335, 418, 438
CviQI	GTAC	2 cut(s)	138, 283
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	11, 483, 601
DpnII	GATC	3 cut(s)	9, 481, 599
DraI	TTTAAA	1 cut(s)	595
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	5 cut(s)	40, 259, 322, 423, 488
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	5 cut(s)	36, 255, 318, 419, 484
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	308, 323, 469
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	308, 323, 469
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	3 cut(s)	308, 323, 469
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	5 cut(s)	40, 259, 322, 423, 488
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188III	TCNNGA	2 cut(s)	37, 275
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	34, 259, 391, 557
HpyCH4V	TGCA	8 cut(s)	4, 167, 353, 423, 430, 471, 496, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 328
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	40, 259, 322, 423, 488
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	9, 481, 599
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	8 cut(s)	68, 288, 352, 358, 424, 564, 641, 652
Lsp1109I	GCAGC	2 cut(s)	294, 455
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	3 cut(s)	11, 483, 601
MboI	GATC	3 cut(s)	9, 481, 599
MboII	GAAGA	2 cut(s)	83, 119
MhlI	GDGCHC	3 cut(s)	26, 215, 627
MluCI	AATT	3 cut(s)	55, 524, 541
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	147, 220, 223, 226, 243, 613
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	294, 387, 501, 594
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	1 cut(s)	345
Mva1269I	GAATGC	2 cut(s)	169, 270
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	267, 328
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	9, 481, 599
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	5 cut(s)	40, 259, 322, 423, 488
NlaIV	GGNNCC	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	531
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	2 cut(s)	169, 270
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	309, 324, 470
Ple19I	CGATCG	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	688
Psp124BI	GAGCTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	531
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	139, 284
RsaNI	GTAC	2 cut(s)	138, 283
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	294, 387, 501, 594
SatI	GCNGC	3 cut(s)	308, 323, 469
Sau3AI	GATC	3 cut(s)	9, 481, 599
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	3 cut(s)	26, 215, 627
SetI	ASST	9 cut(s)	26, 139, 158, 201, 237, 263, 337, 440, 568
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	531, 663
SmoI	CTYRAG	2 cut(s)	531, 663
Sse9I	AATT	3 cut(s)	55, 524, 541
SsiI	CCGC	2 cut(s)	323, 329
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	649
TaqI	TCGA	2 cut(s)	17, 532
TasI	AATT	3 cut(s)	55, 524, 541
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	294, 387, 501, 594
Tru9I	TTAA	4 cut(s)	294, 387, 501, 594
TseI	GCWGC	2 cut(s)	307, 468
TspDTI	ATGAA	4 cut(s)	25, 53, 479, 537
TspGWI	ACGGA	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	3 cut(s)	55, 524, 541
XhoI	CTCGAG	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.