Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

28300901 .. 28302369

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAAGAGATGTGCGCTGAAATGATTTTGATGAAGGAAATTTTGAAGCCTGGGCAAAGAAATCTAAACAATTCGAGTTCTAGACATGTCCAGGTCCCATCAAAGAAGCGCGAGAATTCTATGTTTGTCACTACAAAGGGAAATTCTCTGGGAGGGGGGACCAGTAACGCATTGAAAGCTTTGGGTGCATACTTGAGATATTTGGAGGGAACAGAACGTGATCACTACTGGTGGGAAAAACATGAACGGATGCCCTGTGCTGAAAGTCGGGATGGAGCTTCATTTACTACACTCTTTGGTCCTGCCCTTTTTCTTGGTATCCTATCCAGAAGAAGAGTATATTTTGAAGCTCTCAAGTATAAGAAAGAACGAGATTCTGGATTTCTGTCTCCTTTTGGATATTCATCCGCTACATTGCCGCAACTGTTGATTCGGTGTGCTCAATGGAGAAGATTTCGTATTCGTATCTGGAGATGGAAAGGCTATCTAATTCAGTATACAGTTGTGGGTGAAGAAGGTCCTGCTACTCTTCTGGTTCATGGTTTTGGAGCCTTCTTGGAGCATTACCGTGACAACATACGCGCCATTGCTGAAGGTGGAAACCGAGTATGGGCCATCACACTATTAGGATTTGGCAAATCGGAAAAGCCAAACATTGAATACACTGAACTCATGTGGGCTGAAATGCTTAGAGATTTCATTATTGAAGTTGTGGGTGAACCAGCACATCTGGTTGGGAACTCAATTGGTGGTTATATTATTGCAATTGTCGCTCGTCTCTGGCCTGCTTTGGTCAAATCTGTGGTTCTTATCAACAGTGGTGGGAATGTTATTCCAGGATATTCCTCTGTGTTGTTCGCCAAAGTAAGCTTGATTAAAAACAGTCTCATAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

299

Amino Acids

33.67

Weight (kDa)

9.68

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	177 - 273	2.7e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	177 - 275	9.5e-12	Alpha/beta hydrolase family
Hydrolase_4	PF12146	177 - 278	4.6e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	2 cut(s)	111, 582
AciI	CCGC	2 cut(s)	408, 419
AcsI	RAATTY	3 cut(s)	39, 115, 142
AcuI	CTGAAG	1 cut(s)	612
AfiI	CCNNNNNNNGG	1 cut(s)	610
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	46, 175, 347, 659, 707
AjnI	CCWGG	3 cut(s)	49, 90, 835
AluBI	AGCT	4 cut(s)	179, 278, 350, 870
AluI	AGCT	4 cut(s)	179, 278, 350, 870
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	3 cut(s)	393, 782, 890
AoxI	GGCC	2 cut(s)	612, 782
ApoI	RAATTY	3 cut(s)	39, 115, 142
AspLEI	GCGC	3 cut(s)	17, 111, 584
AspS9I	GGNCC	5 cut(s)	94, 159, 299, 518, 612
AsuHPI	GGTGA	2 cut(s)	521, 728
AvaII	GGWCC	4 cut(s)	94, 159, 299, 518
Bbv12I	GWGCWC	1 cut(s)	442
BccI	CCATC	4 cut(s)	106, 266, 468, 623
BciT130I	CCWGG	3 cut(s)	51, 92, 837
BciVI	GTATCC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	393, 782, 890
BfaI	CTAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	3 cut(s)	51, 92, 837
Bme18I	GGWCC	4 cut(s)	94, 159, 299, 518
BmgT120I	GGNCC	5 cut(s)	94, 159, 299, 518, 612
BmiI	GGNNCC	3 cut(s)	96, 160, 550
BmrFI	CCNGG	3 cut(s)	51, 92, 837
BmsI	GCATC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	490
BpuEI	CTTGAG	2 cut(s)	214, 338
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse1I	ACTGG	2 cut(s)	162, 233
Bse3DI	GCAATG	2 cut(s)	413, 585
Bse8I	GATNNNNATC	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	51, 92, 837
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	255, 277, 404
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMI	GCAATG	2 cut(s)	413, 585
BseNI	ACTGG	2 cut(s)	162, 233
Bsh1236I	CGCG	2 cut(s)	111, 582
BshFI	GGCC	2 cut(s)	614, 784
BsiHKAI	GWGCWC	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	80, 172
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	3 cut(s)	393, 782, 890
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	2 cut(s)	80, 172
BsnI	GGCC	2 cut(s)	614, 784
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	408, 419
BspANI	GGCC	2 cut(s)	614, 784
BspFNI	CGCG	2 cut(s)	111, 582
BspLI	GGNNCC	3 cut(s)	96, 160, 550
BsrDI	GCAATG	2 cut(s)	413, 585
BsrI	ACTGG	2 cut(s)	162, 233
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	220
BssNAI	GTATAC	1 cut(s)	498
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	3 cut(s)	51, 92, 837
Bst4CI	ACNGT	5 cut(s)	426, 502, 569, 818, 884
Bst6I	CTCTTC	2 cut(s)	328, 534
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	255, 277, 404
BstFNI	CGCG	2 cut(s)	111, 582
BstHHI	GCGC	3 cut(s)	17, 111, 584
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	3 cut(s)	393, 782, 890
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 185, 770
BstNI	CCWGG	3 cut(s)	51, 92, 837
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	49, 90, 835
BstUI	CGCG	2 cut(s)	111, 582
BstZ17I	GTATAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	614, 784
BtsCI	GGATG	3 cut(s)	255, 277, 404
BtsIMutI	CAGTG	2 cut(s)	663, 823
Cac8I	GCNNGC	1 cut(s)	786
CfoI	GCGC	3 cut(s)	17, 111, 584
Cfr13I	GGNCC	5 cut(s)	94, 159, 299, 518, 612
CspCI	CAANNNNNGTGG	2 cut(s)	802, 837
CviAII	CATG	4 cut(s)	86, 242, 539, 673
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	328, 534
EarI	CTCTTC	2 cut(s)	328, 534
Eco47I	GGWCC	4 cut(s)	94, 159, 299, 518
Eco57I	CTGAAG	1 cut(s)	612
EcoO109I	RGGNCCY	2 cut(s)	94, 518
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	49, 90, 835
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	4 cut(s)	89, 245, 542, 676
FaqI	GGGAC	2 cut(s)	80, 172
FatI	CATG	4 cut(s)	85, 241, 538, 672
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	3 cut(s)	262, 284, 391
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	3 cut(s)	16, 110, 583
GluI	GCNGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	614, 784
HhaI	GCGC	3 cut(s)	17, 111, 584
Hin1II	CATG	4 cut(s)	89, 245, 542, 676
Hin6I	GCGC	3 cut(s)	15, 109, 582
HinP1I	GCGC	3 cut(s)	15, 109, 582
HindIII	AAGCTT	2 cut(s)	177, 868
HinfI	GANTC	2 cut(s)	374, 430
HphI	GGTGA	2 cut(s)	521, 728
Hpy166II	GTNNAC	2 cut(s)	498, 719
Hpy188I	TCNGA	1 cut(s)	643
Hpy188III	TCNNGA	5 cut(s)	81, 269, 327, 378, 469
Hpy8I	GTNNAC	2 cut(s)	498, 719
HpyAV	CCTTC	4 cut(s)	28, 509, 562, 587
HpyCH4III	ACNGT	5 cut(s)	426, 502, 569, 818, 884
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	188, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 185, 770
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	89, 245, 542, 676
HspAI	GCGC	3 cut(s)	15, 109, 582
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	3 cut(s)	275, 548, 559
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	3 cut(s)	127, 164, 569
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	342, 345, 462, 521, 524
MfeI	CAATTG	2 cut(s)	744, 765
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	7 cut(s)	39, 70, 115, 142, 489, 744, 765
MnlI	CCTC	3 cut(s)	146, 199, 856
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	567
MspR9I	CCNGG	3 cut(s)	51, 92, 837
MunI	CAATTG	2 cut(s)	744, 765
MvaI	CCWGG	3 cut(s)	51, 92, 837
MvnI	CGCG	2 cut(s)	111, 582
MwoI	GCNNNNNNNGC	3 cut(s)	176, 185, 770
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	89, 245, 542, 676
NlaIV	GGNNCC	3 cut(s)	96, 160, 550
NmuCI	GTSAC	2 cut(s)	127, 569
NspI	RCATGY	1 cut(s)	89
PciI	ACATGT	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	374, 430
PfoI	TCCNGGA	1 cut(s)	835
PkrI	GCNGC	1 cut(s)	420
PpuMI	RGGWCCY	2 cut(s)	94, 518
PscI	ACATGT	1 cut(s)	85
Psp5II	RGGWCCY	2 cut(s)	94, 518
Psp6I	CCWGG	3 cut(s)	49, 90, 835
PspGI	CCWGG	3 cut(s)	49, 90, 835
PspN4I	GGNNCC	3 cut(s)	96, 160, 550
PspPI	GGNCC	5 cut(s)	94, 159, 299, 518, 612
PspPPI	RGGWCCY	2 cut(s)	94, 518
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	5 cut(s)	94, 159, 299, 518, 612
ScrFI	CCNGG	3 cut(s)	51, 92, 837
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	8 cut(s)	96, 181, 220, 280, 352, 520, 598, 872
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	4 cut(s)	94, 159, 299, 518
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	193, 353
SmoI	CTYRAG	2 cut(s)	193, 353
Sse9I	AATT	7 cut(s)	39, 70, 115, 142, 489, 744, 765
SsiI	CCGC	2 cut(s)	408, 419
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	49, 90, 835
TaaI	ACNGT	5 cut(s)	426, 502, 569, 818, 884
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	74
TasI	AATT	7 cut(s)	39, 70, 115, 142, 489, 744, 765
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	2 cut(s)	374, 430
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	2 cut(s)	670, 823
TseFI	GTSAC	2 cut(s)	127, 569
Tsp45I	GTSAC	2 cut(s)	127, 569
TspDTI	ATGAA	7 cut(s)	17, 47, 258, 270, 393, 527, 688
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	2 cut(s)	670, 823
VpaK11BI	GGWCC	4 cut(s)	94, 159, 299, 518
XapI	RAATTY	3 cut(s)	39, 115, 142
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.