Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

30177399 .. 30181878

Gene Structure 4480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTGGAAATGGTTGCGGTTGCTTTAGAAGATTTGAGAAACTCGTTGAGAGATAAAGGTACGAACTTGATGGTGAGGTTTGGGAATGCAGAGAATGTGATACAAGAGATTGTAGAAAAGGTTCGGGTTGTGAGCACTATGTATGCTGAGGAGGAGGTGGAGTATGGTCGTTTGAGGGACATGGTTGGTGTTGTCAAGGACAGATTGGGAACAATGCCTTCTGCCCCTGAGTTTGTGTTGTGGCGAACACCGTTTTATGATGTGAAGAGCTTGAAGGGCATTCCTGATTCGTACAATGACTTTAATAAACTTCGGCTGCCAATAACCATGCCGCTTCCGCCAGCTACATTTTCTGGTAGTGCAATGGAGTTGGTCTGGGGTCCTATGCCCACATTTAATGATTTGAAGGAGTTTGTAAACGCAAAGCCATGCAAAATGCAAGAGAGGTGGACTTCAATCAAGGTAAATTTGAGCAATGCTAGCTTGGAAGGTGCATTTACTACAGGCAACACATCTTTTAAAGGAACAACTGCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCAGAATACACCAAGGACTGGAAACATCGGTACATTGTTGTGGTTGTTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

6.33

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	580
AciI	CCGC	3 cut(s)	17, 332, 338
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	3 cut(s)	61, 293, 594
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	274, 406, 456
AluBI	AGCT	3 cut(s)	270, 344, 483
AluI	AGCT	3 cut(s)	270, 344, 483
Alw21I	GWGCWC	2 cut(s)	137, 552
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	85
AsuNHI	GCTAGC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	137, 552
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	317, 332
BlsI	GCNGC	2 cut(s)	318, 333
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	381
BmtI	GCTAGC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu10I	CCTNAGC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	2 cut(s)	369, 481
BseDI	CCNNGG	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	369, 481
BseMII	CTCAG	2 cut(s)	138, 219
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	3 cut(s)	164, 167, 560
BseXI	GCAGC	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	137, 552
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	91, 279
Bsp1286I	GDGCHC	2 cut(s)	137, 552
BspACI	CCGC	3 cut(s)	17, 332, 338
BspCNI	CTCAG	2 cut(s)	139, 220
BspLI	GGNNCC	1 cut(s)	381
BspOI	GCTAGC	1 cut(s)	483
BspQI	GCTCTTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	369, 481
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	342, 481
BstDEI	CTNAG	2 cut(s)	147, 228
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 337, 480
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	342, 481
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	60, 292, 593
CspCI	CAANNNNNGTGG	2 cut(s)	428, 463
CviAII	CATG	3 cut(s)	181, 328, 429
CviJI	RGCY	5 cut(s)	270, 316, 344, 427, 483
CviKI_1	RGCY	5 cut(s)	270, 316, 344, 427, 483
CviQI	GTAC	3 cut(s)	60, 292, 593
DdeI	CTNAG	2 cut(s)	147, 228
DraI	TTTAAA	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	184, 331, 432
FaiI	YATR	8 cut(s)	140, 144, 165, 182, 258, 329, 386, 430
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	3 cut(s)	180, 327, 428
Fnu4HI	GCNGC	2 cut(s)	317, 332
Fsp4HI	GCNGC	2 cut(s)	317, 332
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	2 cut(s)	317, 332
Hin1II	CATG	3 cut(s)	184, 331, 432
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	418, 450
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	418, 450
HpyAV	CCTTC	4 cut(s)	228, 268, 400, 482
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	89, 362, 432, 439, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 337, 480
HpyF3I	CTNAG	2 cut(s)	147, 228
Hsp92II	CATG	3 cut(s)	184, 331, 432
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	8 cut(s)	240, 297, 339, 354, 361, 489, 566, 577
Lsp1109I	GCAGC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	480
MboII	GAAGA	2 cut(s)	41, 277
MhlI	GDGCHC	2 cut(s)	137, 552
MluCI	AATT	1 cut(s)	466
MnlI	CCTC	7 cut(s)	69, 142, 145, 148, 168, 438, 538
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	303, 396, 519
MslI	CAYNNNNRTG	1 cut(s)	600
Mva1269I	GAATGC	2 cut(s)	91, 279
MwoI	GCNNNNNNNGC	3 cut(s)	276, 337, 480
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	3 cut(s)	184, 331, 432
NlaIV	GGNNCC	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	260
PctI	GAATGC	2 cut(s)	91, 279
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	318, 333
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PsrI	GAACNNNNNNTAC	2 cut(s)	105, 137
RsaI	GTAC	3 cut(s)	61, 293, 594
RsaNI	GTAC	3 cut(s)	60, 292, 593
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	303, 396, 519
SatI	GCNGC	2 cut(s)	317, 332
Sau96I	GGNCC	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	137, 552
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	3 cut(s)	17, 332, 338
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	252
TasI	AATT	1 cut(s)	466
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	303, 396, 519
Tru9I	TTAA	3 cut(s)	303, 396, 519
TseI	GCWGC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.