Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005426

Physical Location & Seq

Genomic Coordinates Reverse (-)

13525774 .. 13526348

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTATGCTGAGGAGGAGGTGGAGTATGGTCATTTGAGAGACATGGTTGGTGTTGTCGAGGACAGATTGGGAACAATGCCTTCTGCCCCTGAGTTTGTGCTGTGGCGAACACCGTTTTATGATGTGAAGAGCTTGAAGGGCATTCTTGATTCGTACAATGACTTTAATAAACTTCGGCTGCCAATAACCATGCCGCTTTCGCCAGCTACATTTTCCGGTAGTGCAATGGAGTTGGACTGGGGTTCTATGCCCACATTTAATGATTTGAAGGAGTTTGTAAACGCAAAGCCATGCAAAATGCAAGAGAGTTGGACTTCAATCAAGGTAATGTTGACTGAAACAGTACTGATGAAAATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

120

Amino Acids

13.78

Weight (kDa)

4.82

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25290
fragaria_vesca	FvH4_7g27950 FvH4_7g27950 FvH4_7g27950
malus_domestica	MD01G1183500.v1.1 MD01G1183800.v1.1 MD01G1183900.v1.1 MD01G1184400.v1.1
prunus_persica	Prupe.2G280600_v2.0.a1
pyrus_communis	pycom01g19600
rosa_chinensis	RchiOBHm_Chr1g0374901
rosa_laevigata	RLG00000026708
rosa_multiflora	Rmu_co8417971.1_g000001 Rmu_sc0001849.1_g000083 Rmu_sc0003145.1_g000008 Rmu_sc0004947.1_g000034
rosa_roxburghii	Rroxscaffold_4G00283190 Rroxscaffold_7G00197970
rosa_rugosa	Rorug01G0385700 Rorug01G0385800
rosa_samantha	Rh1AG397300 Rh1BG361200 Rh1CG374800 Rh1DG392100 Rh1DG392200 Rh2AG349700 Rh5CG277500
rosa_wichuraiana	Rw1G006600 Rw1G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	2 cut(s)	155, 345
AgsI	TTSAA	3 cut(s)	136, 268, 318
AluBI	AGCT	2 cut(s)	132, 206
AluI	AGCT	2 cut(s)	132, 206
Alw26I	GTCTC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	179, 194
BlsI	GCNGC	2 cut(s)	180, 195
BmcAI	AGTACT	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	114, 343
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	9, 90
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 199
BstV1I	GCAGC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	154, 344
CviAII	CATG	3 cut(s)	43, 190, 291
CviJI	RGCY	4 cut(s)	132, 178, 206, 289
CviKI_1	RGCY	4 cut(s)	132, 178, 206, 289
CviQI	GTAC	2 cut(s)	154, 344
DdeI	CTNAG	2 cut(s)	9, 90
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	46, 193, 294
FaiI	YATR	7 cut(s)	6, 27, 44, 120, 191, 248, 292
FatI	CATG	3 cut(s)	42, 189, 290
Fnu4HI	GCNGC	2 cut(s)	179, 194
Fsp4HI	GCNGC	2 cut(s)	179, 194
GluI	GCNGC	2 cut(s)	179, 194
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	3 cut(s)	46, 193, 294
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	280, 333
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	280, 333
HpyAV	CCTTC	3 cut(s)	90, 130, 262
HpyCH4III	ACNGT	2 cut(s)	114, 343
HpyCH4V	TGCA	3 cut(s)	224, 294, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 199
HpyF3I	CTNAG	2 cut(s)	9, 90
Hsp92II	CATG	3 cut(s)	46, 193, 294
LguI	GCTCTTC	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	102, 216, 223, 229
Lsp1109I	GCAGC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	2 cut(s)	213, 290
MnlI	CCTC	4 cut(s)	4, 7, 10, 52
MseI	TTAA	3 cut(s)	165, 258, 361
MspI	CCGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	138, 199
NlaIII	CATG	3 cut(s)	46, 193, 294
PciSI	GCTCTTC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	180, 195
RsaI	GTAC	2 cut(s)	155, 345
RsaNI	GTAC	2 cut(s)	154, 344
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	165, 258, 361
SatI	GCNGC	2 cut(s)	179, 194
ScaI	AGTACT	1 cut(s)	345
SetI	ASST	4 cut(s)	21, 134, 208, 327
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	114, 343
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	165, 258, 361
Tru9I	TTAA	3 cut(s)	165, 258, 361
TseI	GCWGC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.