Rh1BG361200

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005426
Physical Location & Seq
Reverse (-)
49133859 .. 49136534
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG361200.1

Sequence Viewer

Length: 1581 bp
ATGGCTTCACTCTTCACTCTCCAACACTCTCCCTCGCTTTCCTTCTCCCCAAGAACCCACCTTTACTCGCCGAAACGGTGCCGTTTCCGAGCTCAAATTTCAGTCAACGGCGGAGCGAAGACCGGCGCCGCCGTCGTTTGGCTGAAGCACGACCTCCGAATCGACGATCATCCAGCTCTTCTCGCCGCCGCTAATCACTCCGGAGCTATTCCTCTCTATGTCTTCGACTACCGTATTCTCTCCCGTTTTGGGGACGAAATGCTGGAAATGGTTGCGGTTGCTTTAGAAGATTTGAGAAACTCGTTGAGAGATAAAGGTACGAACTTGATGGTGAGGTTTGGGAATGCAGAGAATGTGATACAAGAGATTGTAGAAAAGGTTCGTGTTGTGAGCACTGTGTATGCTGAGGAGGAGGTGGAGTATGGTTTAAGGGAGATGGTTGGTGTTGTCAAGGACAGATTGGGAACAATGCCTTCTGCCCCTGACTTTGTGCTGTGGCGGACGCTGTTTTATGATGTGAAGAGCTTGAAGGGCATTCCTGATTCCTACAATGACTTTACTAAACTTCGATTGCCAATAACCACGCCGCTTCCGCCAGCTACATTTTCCGGTGGTGCAATGGAGTTGGACTGGGGTCCTATGCCCACATTTGATGATTTGAAGGAGTTTGTAAACGCAAATCCATGCAAAATGCAAGAGAGGTGGACTTCAATCAAGGTCCAGTCAAAGAGTCGTGATGAAGTGTTTGCCACCACAAAAGGAAATTCTATGGGGGGTCAGACGAGCACGGTATTGAATTCTTTGGGTGCATACTTGAGATACTTGGATGGAGAATCACGGGATGACTTCTGGCAGAAGGTGCATGAAAGGATGCCCTATGCTGAAAGCCGGGATGGAGCTTCATTCAATACTCTCTTTGGTACAGCCCTTTCTCTTGGAATCCTATCCAGAAGGAGAGTATATTTTGAAGCTATTAAGCATAACAAAGAACGAAACTGTGGATTTCTATCTCCTTTTGGTTCAGGAGCAACAATTTCTGCTGCTGTTGATTCGGTGTGCTCAATGGAGTGGTATTGGCTTCTGGCTCTCAAAAGTCAGATAAGTAATGATAGAAGATATCATATTCGTATCTGGAGATGGAAAGGCTATCTAATTCAGTATACCGTTGTTGGTCATGAAGGTCCTGCTATTCTGCTTGTGCATGGTTTTGGAGCCTTTTTGGAGCATTACCGTGATAACCTAGGTCGCATCGCTGAAGGTGGAAACCGAGTTTGGGCCATTACAGTTTTAGGATTGGGAAATCAGAGAAGCCAAATATTGTGTACACTGAACTCCTGTGGTCTGAAATGCTTAGAGATTTCATTCTTGAAGTTGTGGGTGAACCAGTGCATCTTGTTGGGAACTCAATTGGTGGTTATATTATTGCAATTGTTGCTTGTCTTTGGCCTGCTCTGGCCAAATCTGTTGTTCTTATTAACAGTGGGGGTGAGGTTATTCCATACTCCTCCCCGCCATTCACTAAAGAAAGAAAAACATCAGGGGCTTCATGGCTGGGTGCTCGATTTCTTTTGTTCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

526

Amino Acids

59.42

Weight (kDa)

8.99

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 44 - 187 4.4e-21 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 125
AccI GTMKAC 1 cut(s) 1160
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 1510
AcoI YGGCCR 1 cut(s) 1454
AcsI RAATTY 3 cut(s) 96, 763, 796
AcuI CTGAAG 2 cut(s) 164, 1275
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 3 cut(s) 319, 922, 1324
AfiI CCNNNNNNNGG 4 cut(s) 138, 249, 250, 1273
AgsI TTSAA 7 cut(s) 529, 661, 711, 796, 907, 968, 1369
AjuI GAANNNNNNNTTGG 2 cut(s) 1255, 1287
AluBI AGCT 7 cut(s) 92, 176, 206, 525, 599, 899, 971
AluI AGCT 7 cut(s) 92, 176, 206, 525, 599, 899, 971
Alw21I GWGCWC 5 cut(s) 94, 395, 788, 1061, 1560
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 3 cut(s) 1275, 1444, 1454
ApeKI GCWGC 1 cut(s) 1040
ApoI RAATTY 3 cut(s) 96, 763, 796
Asp700I GAANNNNTTC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 1240
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 635, 718, 1181, 1275
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 3 cut(s) 343, 1390, 1498
AvaII GGWCC 3 cut(s) 635, 718, 1181
AvrII CCTAGG 1 cut(s) 1240
BalI TGGCCA 1 cut(s) 1456
BanI GGYRCC 2 cut(s) 78, 125
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 125, 214
Bbv12I GWGCWC 5 cut(s) 94, 395, 788, 1061, 1560
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 1027
BccI CCATC 5 cut(s) 322, 430, 821, 887, 1131
BceAI ACGGC 3 cut(s) 66, 116, 124
BcnI CCSGG 1 cut(s) 890
BfaI CTAG 1 cut(s) 1241
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 5 cut(s) 129, 186, 189, 587, 1041
BlnI CCTAGG 1 cut(s) 1240
BlsI GCNGC 5 cut(s) 130, 187, 190, 588, 1042
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 635, 718, 1181
BmgT120I GGNCC 4 cut(s) 635, 718, 1181, 1275
BmiI GGNNCC 4 cut(s) 80, 127, 636, 1213
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 3 cut(s) 861, 1257, 1398
BmuI ACTGGG 1 cut(s) 640
BoxI GACNNNNGTC 1 cut(s) 633
BpiI GAAGAC 2 cut(s) 125, 214
BpmI CTGGAG 1 cut(s) 1153
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 890
BsaBI GATNNNNATC 1 cut(s) 1006
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 1240
BsaWI WCCGGW 2 cut(s) 200, 608
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 249, 250, 1273
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 635, 721, 1384
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 1006
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 1240
BseGI GGATG 5 cut(s) 169, 832, 847, 876, 898
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 4 cut(s) 138, 249, 250, 1273
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 3 cut(s) 635, 721, 1384
BseRI GAGGAG 3 cut(s) 422, 425, 1494
BseXI GCAGC 1 cut(s) 1027
BseYI CCCAGC 1 cut(s) 1551
BshFI GGCC 3 cut(s) 1277, 1446, 1456
BshNI GGYRCC 2 cut(s) 78, 125
BsiHKAI GWGCWC 5 cut(s) 94, 395, 788, 1061, 1560
BsiSI CCGG 4 cut(s) 123, 201, 609, 889
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 4 cut(s) 138, 249, 250, 1273
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 2 cut(s) 349, 534
BsnI GGCC 3 cut(s) 1277, 1446, 1456
Bsp1286I GDGCHC 5 cut(s) 94, 395, 788, 1061, 1560
Bsp13I TCCGGA 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 1322
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 1510
BspANI GGCC 3 cut(s) 1277, 1446, 1456
BspCNI CTCAG 1 cut(s) 397
BspEI TCCGGA 1 cut(s) 200
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 4 cut(s) 80, 127, 636, 1213
BspQI GCTCTTC 2 cut(s) 183, 515
BspT107I GGYRCC 2 cut(s) 78, 125
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 1322
BsrI ACTGG 3 cut(s) 635, 721, 1384
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 1240
BssMI GATC 1 cut(s) 166
BssNAI GTATAC 1 cut(s) 1161
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 1240
Bst1107I GTATAC 1 cut(s) 1161
Bst4CI ACNGT 9 cut(s) 78, 233, 397, 790, 998, 1165, 1232, 1285, 1480
Bst6I CTCTTC 3 cut(s) 17, 183, 515
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 2 cut(s) 859, 1432
BstAUI TGTACA 1 cut(s) 1322
BstC8I GCNNGC 2 cut(s) 597, 1448
BstDEI CTNAG 2 cut(s) 405, 1351
BstF5I GGATG 5 cut(s) 169, 832, 847, 876, 898
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 5 cut(s) 182, 531, 592, 859, 1432
BstPAI GACNNNNGTC 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 888
BstV1I GCAGC 1 cut(s) 1027
BstV2I GAAGAC 2 cut(s) 125, 214
BstZ17I GTATAC 1 cut(s) 1161
BsuRI GGCC 3 cut(s) 1277, 1446, 1456
BtgZI GCGATG 1 cut(s) 1234
BtsCI GGATG 5 cut(s) 169, 832, 847, 876, 898
BtsIMutI CAGTG 4 cut(s) 393, 1325, 1391, 1485
Cac8I GCNNGC 2 cut(s) 597, 1448
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 4 cut(s) 635, 718, 1181, 1275
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 318, 921, 1323
CspCI CAANNNNNGTGG 2 cut(s) 683, 718
CviAII CATG 5 cut(s) 684, 863, 1175, 1202, 1547
CviQI GTAC 3 cut(s) 318, 921, 1323
DdeI CTNAG 2 cut(s) 405, 1351
DinI GGCGCC 1 cut(s) 127
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 1454
Eam1104I CTCTTC 3 cut(s) 17, 183, 515
EarI CTCTTC 3 cut(s) 17, 183, 515
EciI GGCGGA 3 cut(s) 126, 514, 582
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 1118
Eco47I GGWCC 3 cut(s) 635, 718, 1181
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 164, 1275
EcoICRI GAGCTC 1 cut(s) 92
EcoO109I RGGNCCY 2 cut(s) 635, 1181
EcoRI GAATTC 1 cut(s) 796
EcoRV GATATC 1 cut(s) 1118
EcoT14I CCWWGG 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 1240
FaeI CATG 5 cut(s) 687, 866, 1178, 1205, 1550
FaqI GGGAC 1 cut(s) 266
FatI CATG 5 cut(s) 683, 862, 1174, 1201, 1546
FauI CCCGC 1 cut(s) 1517
FblI GTMKAC 1 cut(s) 1160
Fnu4HI GCNGC 5 cut(s) 129, 186, 189, 587, 1041
FokI GGATG 5 cut(s) 156, 839, 854, 883, 905
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 5 cut(s) 129, 186, 189, 587, 1041
FspBI CTAG 1 cut(s) 1241
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 129, 186, 189, 587, 1041
GsaI CCCAGC 1 cut(s) 1555
GsuI CTGGAG 1 cut(s) 1153
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 1277, 1446, 1456
HapII CCGG 4 cut(s) 123, 201, 609, 889
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 5 cut(s) 687, 866, 1178, 1205, 1550
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 6 cut(s) 159, 542, 730, 833, 939, 1049
HpaII CCGG 4 cut(s) 123, 201, 609, 889
HphI GGTGA 3 cut(s) 343, 1390, 1498
Hpy166II GTNNAC 7 cut(s) 106, 673, 705, 1161, 1323, 1325, 1381
Hpy188I TCNGA 6 cut(s) 89, 158, 780, 1098, 1305, 1344
Hpy188III TCNNGA 8 cut(s) 201, 539, 734, 948, 1023, 1132, 1175, 1366
Hpy8I GTNNAC 7 cut(s) 106, 673, 705, 1161, 1323, 1325, 1381
Hpy99I CGWCG 2 cut(s) 137, 167
HpyAV CCTTC 8 cut(s) 52, 483, 523, 655, 850, 945, 1172, 1250
HpyCH4III ACNGT 9 cut(s) 78, 233, 397, 790, 998, 1165, 1232, 1285, 1480
HpyCH4V TGCA 9 cut(s) 347, 617, 687, 694, 809, 862, 1201, 1389, 1426
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 531, 592, 859, 1432
HpyF3I CTNAG 2 cut(s) 405, 1351
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 5 cut(s) 687, 866, 1178, 1205, 1550
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 2 cut(s) 183, 515
LmnI GCTCC 6 cut(s) 113, 203, 896, 1025, 1211, 1222
Lsp1109I GCAGC 1 cut(s) 1027
LweI GCATC 3 cut(s) 861, 1257, 1398
MaeI CTAG 1 cut(s) 1241
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 7 cut(s) 4, 130, 170, 214, 299, 532, 1125
MfeI CAATTG 2 cut(s) 1406, 1427
MhlI GDGCHC 5 cut(s) 94, 395, 788, 1061, 1560
MlsI TGGCCA 1 cut(s) 1456
MluCI AATT 7 cut(s) 96, 763, 796, 1032, 1152, 1406, 1427
MluNI TGGCCA 1 cut(s) 1456
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 46, 606
Mox20I TGGCCA 1 cut(s) 1456
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 1456
MseI TTAA 3 cut(s) 428, 975, 1475
MslI CAYNNNNRTG 1 cut(s) 1230
Msp20I TGGCCA 1 cut(s) 1456
MspI CCGG 4 cut(s) 123, 201, 609, 889
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 2 cut(s) 1406, 1427
Mva1269I GAATGC 2 cut(s) 349, 534
MwoI GCNNNNNNNGC 5 cut(s) 182, 531, 592, 859, 1432
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 1 cut(s) 890
NdeII GATC 1 cut(s) 166
NlaIII CATG 5 cut(s) 687, 866, 1178, 1205, 1550
NlaIV GGNNCC 4 cut(s) 80, 127, 636, 1213
PagI TCATGA 1 cut(s) 1174
PciSI GCTCTTC 2 cut(s) 183, 515
PctI GAATGC 2 cut(s) 349, 534
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 5 cut(s) 159, 542, 833, 939, 1049
PkrI GCNGC 5 cut(s) 130, 187, 190, 588, 1042
PleI GAGTC 1 cut(s) 738
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 2 cut(s) 635, 1181
PshAI GACNNNNGTC 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 94
Psp5II RGGWCCY 2 cut(s) 635, 1181
PspFI CCCAGC 1 cut(s) 1551
PspN4I GGNNCC 4 cut(s) 80, 127, 636, 1213
PspPI GGNCC 4 cut(s) 635, 718, 1181, 1275
PspPPI RGGWCCY 2 cut(s) 635, 1181
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
RsaI GTAC 3 cut(s) 319, 922, 1324
RsaNI GTAC 3 cut(s) 318, 921, 1323
RseI CAYNNNNRTG 1 cut(s) 1230
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 2 cut(s) 183, 515
SaqAI TTAA 3 cut(s) 428, 975, 1475
SatI GCNGC 5 cut(s) 129, 186, 189, 587, 1041
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 4 cut(s) 635, 718, 1181, 1275
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 5 cut(s) 94, 395, 788, 1061, 1560
SfaNI GCATC 3 cut(s) 861, 1257, 1398
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 3 cut(s) 635, 718, 1181
SmiMI CAYNNNNRTG 1 cut(s) 1230
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
Sse9I AATT 7 cut(s) 96, 763, 796, 1032, 1152, 1406, 1427
SsiI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 1510
SspDI GGCGCC 1 cut(s) 125
SspI AATATT 1 cut(s) 1317
SspMI CTAG 1 cut(s) 1241
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 1240
TaaI ACNGT 9 cut(s) 78, 233, 397, 790, 998, 1165, 1232, 1285, 1480
TaqI TCGA 4 cut(s) 162, 225, 568, 1560
TasI AATT 7 cut(s) 96, 763, 796, 1032, 1152, 1406, 1427
TatI WGTACW 1 cut(s) 1322
TauI GCSGC 4 cut(s) 131, 188, 191, 589
TfiI GAWTC 5 cut(s) 159, 542, 833, 939, 1049
Tru1I TTAA 3 cut(s) 428, 975, 1475
Tru9I TTAA 3 cut(s) 428, 975, 1475
TscAI CASTG 4 cut(s) 400, 1332, 1391, 1485
TseI GCWGC 1 cut(s) 1040
TspDTI ATGAA 6 cut(s) 753, 879, 891, 1191, 1350, 1535
TspRI CASTG 4 cut(s) 400, 1332, 1391, 1485
VpaK11BI GGWCC 3 cut(s) 635, 718, 1181
XapI RAATTY 3 cut(s) 96, 763, 796
XmaJI CCTAGG 1 cut(s) 1240
XmiI GTMKAC 1 cut(s) 1160
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.