Rorug01G0385800

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005426
Physical Location & Seq
Reverse (-)
49741028 .. 49741585
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0385800.1

Sequence Viewer

Length: 558 bp
ATGCCAACTTCTCAGCAGATCCCAACCTTCAATCCTTTGATTTGTGATCCGATTGTTCACATTCCAGTTATGGATATTTGCTCTTCCGGTCATGGCTACCTTGTTAGTGCTGGCCTCGCTATTTCAACTGGCATTCCTCCCTTGCACTCAAACCTTATGAATCCGTTGATTCCTCAAACTGATTCCATGTTGGAGAAGGATGCTAGAGAGACTCTGCGTTGGCTGCTCATAAGTGGTTCAACCCAGAGTAGCTCACCGCTGATGGATGTATTACCTGCCATGCTAACAAATGCAGATGAGAATAGAAATATGCTTGTTGCTGGGAGCCGTGGTCTATACACTGGAACCAGCGACGTTGATGTAATTGCAAATAGCATTGCAGCCATGAGTATGGTTTCACTGCCTGGGATATCTACCGGTGGAACTGTTTTGGAGAATTGTGGCAGCAACAATGGTTTTGATATACAGGATGAGGGATCTAGTGGATTGGGTGGATCCTGTTTGGAAGATCAGGGTACCTTCTGTTCGAATTATGGGATGAAAAGGACTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

185

Amino Acids

19.44

Weight (kDa)

4.31

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AciI CCGC 1 cut(s) 257
AclWI GGATC 5 cut(s) 13, 41, 484, 489, 502
AfaI GTAC 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 31, 126, 240
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 5 cut(s) 13, 41, 484, 489, 502
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 3 cut(s) 223, 380, 444
AsiGI ACCGGT 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 515
AsuHPI GGTGA 1 cut(s) 246
AsuII TTCGAA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 515
BbvI GCAGC 3 cut(s) 210, 392, 456
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 204, 480
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 224, 381, 445
BlsI GCNGC 3 cut(s) 225, 382, 446
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 4 cut(s) 326, 346, 496, 517
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 328, 404
BsaWI WCCGGW 2 cut(s) 86, 416
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 65, 133, 346
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 328, 404
BseGI GGATG 4 cut(s) 205, 271, 475, 543
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 3 cut(s) 65, 133, 346
BseXI GCAGC 3 cut(s) 210, 392, 456
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 515
BshTI ACCGGT 1 cut(s) 416
BsiSI CCGG 2 cut(s) 87, 417
BsmAI GTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 527
Bsp143I GATC 5 cut(s) 18, 46, 476, 494, 508
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 326, 346, 496, 517
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 5 cut(s) 13, 41, 484, 489, 502
BspQI GCTCTTC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 3 cut(s) 65, 133, 346
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 328, 404
BssMI GATC 5 cut(s) 18, 46, 476, 494, 508
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 4 cut(s) 205, 271, 475, 543
BstKTI GATC 5 cut(s) 21, 49, 479, 497, 511
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 5 cut(s) 18, 46, 476, 494, 508
BstMWI GCNNNNNNNGC 2 cut(s) 116, 223
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 210, 392, 456
BstX2I RGATCY 3 cut(s) 18, 476, 494
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 3 cut(s) 18, 476, 494
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 4 cut(s) 205, 271, 475, 543
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 339, 398
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 416
Csp6I GTAC 1 cut(s) 516
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 4 cut(s) 92, 187, 280, 385
CviJI RGCY 6 cut(s) 96, 114, 223, 252, 327, 383
CviKI_1 RGCY 6 cut(s) 96, 114, 223, 252, 327, 383
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 1 cut(s) 12
DpnI GATC 5 cut(s) 20, 48, 478, 496, 510
DpnII GATC 5 cut(s) 18, 46, 476, 494, 508
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 411
FaeI CATG 4 cut(s) 95, 190, 283, 388
FatI CATG 4 cut(s) 91, 186, 279, 384
Fnu4HI GCNGC 3 cut(s) 224, 381, 445
FokI GGATG 4 cut(s) 212, 278, 482, 550
Fsp4HI GCNGC 3 cut(s) 224, 381, 445
FspBI CTAG 2 cut(s) 204, 480
GluI GCNGC 3 cut(s) 224, 381, 445
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 87, 417
Hin1II CATG 4 cut(s) 95, 190, 283, 388
HinfI GANTC 4 cut(s) 160, 169, 182, 211
HpaII CCGG 2 cut(s) 87, 417
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 37, 190, 529
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 4 cut(s) 145, 293, 368, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 223
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 4 cut(s) 95, 190, 283, 388
KpnI GGTACC 1 cut(s) 519
Kzo9I GATC 5 cut(s) 18, 46, 476, 494, 508
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 3 cut(s) 210, 392, 456
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 204, 480
MaeII ACGT 1 cut(s) 354
MalI GATC 5 cut(s) 20, 48, 478, 496, 510
MboI GATC 5 cut(s) 18, 46, 476, 494, 508
MboII GAAGA 2 cut(s) 75, 518
MflI RGATCY 3 cut(s) 18, 476, 494
MluCI AATT 3 cut(s) 363, 436, 529
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 4 cut(s) 125, 147, 183, 466
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 2 cut(s) 87, 417
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 116, 223
NdeII GATC 5 cut(s) 18, 46, 476, 494, 508
NlaIII CATG 4 cut(s) 95, 190, 283, 388
NlaIV GGNNCC 4 cut(s) 326, 346, 496, 517
NspV TTCGAA 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 88
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 160, 169, 182
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 3 cut(s) 225, 382, 446
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 4 cut(s) 326, 346, 496, 517
PsrI GAACNNNNNNTAC 2 cut(s) 508, 540
PsuI RGATCY 3 cut(s) 18, 476, 494
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 88
SatI GCNGC 3 cut(s) 224, 381, 445
Sau3AI GATC 5 cut(s) 18, 46, 476, 494, 508
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 405
SetI ASST 7 cut(s) 29, 102, 156, 254, 277, 357, 521
SfaNI GCATC 1 cut(s) 190
SfuI TTCGAA 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 3 cut(s) 363, 436, 529
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 204, 480
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 527
TasI AATT 3 cut(s) 363, 436, 529
TfiI GAWTC 3 cut(s) 160, 169, 182
TscAI CASTG 2 cut(s) 346, 405
TseI GCWGC 3 cut(s) 223, 380, 444
TspDTI ATGAA 2 cut(s) 173, 554
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 2 cut(s) 346, 405
XspI CTAG 2 cut(s) 204, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.