Rh1CG374800

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005426
Physical Location & Seq
Reverse (-)
64392220 .. 64396440
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG374800.1

Sequence Viewer

Length: 1593 bp
ATGGCTTCACTCTTCACTCTCCAACACTCTCCCTCGCCTTCCTTCTCCCCAAGAACCCACCTTTACTCGCCGAAACGGTGCCGTTTCCGAGCTCAAATTTCAGTCAACGGCGGAGCGAAGACCGGCGCCGCCGTCGTTTGGCTGAAGCACGACCTCCGAATCGACGATCATCCAGCTCTTCTCGCCGCCGCTAATCACTCCGGAGCTATTCCTCTCTATGTCTTCGACCACCGTATTCTCTCCCGTTTTGAAGACGAAATGCTGGAAATGGTTGCGGTTGCTTTAGAAGATTTGAGAAACTCGTTGAGAGATAAAGGTACGAACTTGATGGTGAGGTTTGGGAATGCAGAGAATGTGATACAAGAGATTGTAGAAAAGGTTCGGGTTGTGAGCACCGTGTATGCTGAGGAGGAGGTGGAGTATGGTTTAAGGGAGATGGTTGGTGTTGTCAAGGACAGATTGGGAACAATGCCTTCTGCCCCTGACTTTGTGCTGTGGCGGACGCCGTTTTATGATGTGAAGAGCTTGAAGGGAATTCCTGATTCCTACAATGACTTTACTAAACTTCGATTGCCAATAACCACACCGCTTCCGCCAGCTACATTTTCCGCTAGTGCAATGGAGTTGGACTGGGGTCCCATGCCCACATTTGATGATTTGAAGGAGTTTGTAAACGCAAATCCATGCAAAATGCAAGAGAGGTGGACTTCAATCAAGGTCCAGTCAAAGAGTCGTGATGAAGTGTTTGCCCCCACAAAAGGAAATTCTATGGGGGGTCAGACGAGCACGGTATTGAATTCTTTGGGTGCATACCTGAGATACTTTGATGGAGAATCACGGGATGACTTCTGGCAGAAGGTGCATGAAAGGATGCCCTATGCTGAAAGCCGGGATGGAGCTTCATTTAATACTCTCTTTAGTACAGCCCTTTCTCTTGGCATCCTATCCAGAAGGAGAGTATATTTTGAAGCTATTAAGCATGACAAAGAACGAAACTGTGGATTTCTATCTCCTTTTGGTTCAGGAGCAACAATTTCTGCTGCTGTTGATTCGGTGTGCTCAATGGAGTGGTATTGGCTTCTGGCTCTGAAAAGTCAGATAAGTAATGATAGAAGATATCATATTCGTATCTGGAGATGGAAGGGCTATCTAATTCAGTATACTGCTGTTGGTCATGAAGGTCCTGCTATTCTGCTTGTGCATGGTTTTGGAGCCTTTTTGGAGCATTACCGTGATAACCTAGGTCGCATCGCTGAAGGTGGAAACCGAGTTTGGGCCATTACAATTTTAGGATTTGGGAAATCAGAGAAGCCAAATATTGTGTACACTGAACTCCTGTGGTCTGAAATGCTTAGAGATTTCATTCTTGAAGTTGTGGGTGAACCAGTGCATCTTGTTGGGAACTCAATTGGTGGTTATATTATTGCAATTGTTGCTCGTCTTTGGCCTGCTCTGGCCAAATCTGTTGTTCTTATTAACAGTGGGGGTGAGGTTATTCCATACTCCTCCCCACCATTCACTAAAGTAAGTATGATTAAAACTTGCAGGATATTGAATATGATAGACAACTTTATCATATGTATTCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

530

Amino Acids

59.68

Weight (kDa)

8.09

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 44 - 155 1.4e-20 DNA photolyase
Abhydrolase_1 PF00561 395 - 500 4.8e-10 alpha/beta hydrolase fold
Hydrolase_4 PF12146 396 - 510 5.5e-07 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 397 - 497 7e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 125
AccI GTMKAC 1 cut(s) 1160
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 609
AcoI YGGCCR 1 cut(s) 1455
AcsI RAATTY 4 cut(s) 96, 534, 763, 796
AcuI CTGAAG 2 cut(s) 164, 1275
AcyI GRCGYC 2 cut(s) 126, 503
AfaI GTAC 3 cut(s) 319, 922, 1325
AfiI CCNNNNNNNGG 3 cut(s) 138, 758, 1273
AgsI TTSAA 8 cut(s) 251, 529, 661, 711, 796, 968, 1370, 1555
AjuI GAANNNNNNNTTGG 2 cut(s) 1255, 1287
AluBI AGCT 7 cut(s) 92, 176, 206, 525, 599, 899, 971
AluI AGCT 7 cut(s) 92, 176, 206, 525, 599, 899, 971
Alw21I GWGCWC 4 cut(s) 94, 395, 788, 1061
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 3 cut(s) 1275, 1445, 1455
ApeKI GCWGC 1 cut(s) 1040
ApoI RAATTY 4 cut(s) 96, 534, 763, 796
Asp700I GAANNNNTTC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 1240
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 635, 718, 1181, 1275
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 3 cut(s) 343, 1391, 1499
AvaII GGWCC 3 cut(s) 635, 718, 1181
AvrII CCTAGG 1 cut(s) 1240
BalI TGGCCA 1 cut(s) 1457
BanI GGYRCC 2 cut(s) 78, 125
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 3 cut(s) 125, 214, 258
Bbv12I GWGCWC 4 cut(s) 94, 395, 788, 1061
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 1027
BccI CCATC 5 cut(s) 322, 430, 821, 887, 1131
BceAI ACGGC 4 cut(s) 66, 116, 124, 490
BcnI CCSGG 1 cut(s) 890
BfaI CTAG 2 cut(s) 612, 1241
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 4 cut(s) 129, 186, 189, 1041
BlnI CCTAGG 1 cut(s) 1240
BlsI GCNGC 4 cut(s) 130, 187, 190, 1042
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 3 cut(s) 635, 718, 1181
BmgT120I GGNCC 4 cut(s) 635, 718, 1181, 1275
BmiI GGNNCC 5 cut(s) 80, 127, 636, 637, 1213
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 4 cut(s) 861, 948, 1257, 1399
BmuI ACTGGG 1 cut(s) 640
BoxI GACNNNNGTC 1 cut(s) 633
BpiI GAAGAC 3 cut(s) 125, 214, 258
BpmI CTGGAG 1 cut(s) 1153
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 890
BsaBI GATNNNNATC 1 cut(s) 1006
BsaHI GRCGYC 2 cut(s) 126, 503
BsaJI CCNNGG 1 cut(s) 1240
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 758, 1273
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 635, 721, 1385
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 1006
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 1240
BseGI GGATG 5 cut(s) 169, 847, 876, 898, 939
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 3 cut(s) 138, 758, 1273
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 396, 806
BseNI ACTGG 3 cut(s) 635, 721, 1385
BseRI GAGGAG 3 cut(s) 422, 425, 1495
BseXI GCAGC 1 cut(s) 1027
BshFI GGCC 3 cut(s) 1277, 1447, 1457
BshNI GGYRCC 2 cut(s) 78, 125
BsiHKAI GWGCWC 4 cut(s) 94, 395, 788, 1061
BsiSI CCGG 3 cut(s) 123, 201, 889
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 3 cut(s) 138, 758, 1273
BsmFI GGGAC 1 cut(s) 621
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 3 cut(s) 1277, 1447, 1457
Bsp1286I GDGCHC 4 cut(s) 94, 395, 788, 1061
Bsp13I TCCGGA 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 1323
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 609
BspANI GGCC 3 cut(s) 1277, 1447, 1457
BspCNI CTCAG 2 cut(s) 397, 807
BspEI TCCGGA 1 cut(s) 200
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 5 cut(s) 80, 127, 636, 637, 1213
BspQI GCTCTTC 2 cut(s) 183, 515
BspT107I GGYRCC 2 cut(s) 78, 125
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 1323
BsrI ACTGG 3 cut(s) 635, 721, 1385
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 1240
BssMI GATC 1 cut(s) 166
BssNAI GTATAC 1 cut(s) 1161
BssNI GRCGYC 2 cut(s) 126, 503
BssT1I CCWWGG 1 cut(s) 1240
Bst1107I GTATAC 1 cut(s) 1161
Bst4CI ACNGT 7 cut(s) 78, 233, 397, 790, 998, 1232, 1481
Bst6I CTCTTC 3 cut(s) 17, 183, 515
BstACI GRCGYC 2 cut(s) 126, 503
BstAPI GCANNNNNTGC 2 cut(s) 859, 1433
BstAUI TGTACA 1 cut(s) 1323
BstC8I GCNNGC 2 cut(s) 597, 1449
BstDEI CTNAG 3 cut(s) 405, 815, 1352
BstF5I GGATG 5 cut(s) 169, 847, 876, 898, 939
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 182, 859, 1433
BstPAI GACNNNNGTC 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 888
BstV1I GCAGC 1 cut(s) 1027
BstV2I GAAGAC 3 cut(s) 125, 214, 258
BstZ17I GTATAC 1 cut(s) 1161
BsuRI GGCC 3 cut(s) 1277, 1447, 1457
BtgZI GCGATG 1 cut(s) 1234
BtsCI GGATG 5 cut(s) 169, 847, 876, 898, 939
BtsIMutI CAGTG 3 cut(s) 1326, 1392, 1486
Cac8I GCNNGC 2 cut(s) 597, 1449
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 4 cut(s) 635, 718, 1181, 1275
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 318, 921, 1324
CspCI CAANNNNNGTGG 2 cut(s) 683, 718
CviAII CATG 6 cut(s) 640, 684, 863, 980, 1175, 1202
CviQI GTAC 3 cut(s) 318, 921, 1324
DdeI CTNAG 3 cut(s) 405, 815, 1352
DinI GGCGCC 1 cut(s) 127
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 1455
Eam1104I CTCTTC 3 cut(s) 17, 183, 515
EarI CTCTTC 3 cut(s) 17, 183, 515
EciI GGCGGA 3 cut(s) 126, 514, 582
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 1118
Eco47I GGWCC 3 cut(s) 635, 718, 1181
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 164, 1275
EcoICRI GAGCTC 1 cut(s) 92
EcoO109I RGGNCCY 2 cut(s) 635, 1181
EcoRI GAATTC 2 cut(s) 534, 796
EcoRV GATATC 1 cut(s) 1118
EcoT14I CCWWGG 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 1240
FaeI CATG 6 cut(s) 643, 687, 866, 983, 1178, 1205
FaqI GGGAC 1 cut(s) 621
FatI CATG 6 cut(s) 639, 683, 862, 979, 1174, 1201
FauNDI CATATG 1 cut(s) 1577
FblI GTMKAC 1 cut(s) 1160
Fnu4HI GCNGC 4 cut(s) 129, 186, 189, 1041
FokI GGATG 5 cut(s) 156, 854, 883, 905, 926
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 4 cut(s) 129, 186, 189, 1041
FspBI CTAG 2 cut(s) 612, 1241
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 129, 186, 189, 1041
GsuI CTGGAG 1 cut(s) 1153
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 1277, 1447, 1457
HapII CCGG 3 cut(s) 123, 201, 889
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 2 cut(s) 126, 503
Hin1II CATG 6 cut(s) 643, 687, 866, 983, 1178, 1205
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 5 cut(s) 159, 542, 730, 833, 1049
HpaII CCGG 3 cut(s) 123, 201, 889
HphI GGTGA 3 cut(s) 343, 1391, 1499
Hpy166II GTNNAC 7 cut(s) 106, 673, 705, 1161, 1324, 1326, 1382
Hpy188I TCNGA 7 cut(s) 89, 158, 780, 1089, 1098, 1306, 1345
Hpy188III TCNNGA 8 cut(s) 201, 539, 734, 948, 1023, 1132, 1175, 1367
Hpy8I GTNNAC 7 cut(s) 106, 673, 705, 1161, 1324, 1326, 1382
Hpy99I CGWCG 2 cut(s) 137, 167
HpyCH4III ACNGT 7 cut(s) 78, 233, 397, 790, 998, 1232, 1481
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 859, 1433
HpyF3I CTNAG 3 cut(s) 405, 815, 1352
Hsp92I GRCGYC 2 cut(s) 126, 503
Hsp92II CATG 6 cut(s) 643, 687, 866, 983, 1178, 1205
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
KflI GGGWCCC 1 cut(s) 635
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 2 cut(s) 183, 515
LmnI GCTCC 6 cut(s) 113, 203, 896, 1025, 1211, 1222
Lsp1109I GCAGC 1 cut(s) 1027
LweI GCATC 4 cut(s) 861, 948, 1257, 1399
MaeI CTAG 2 cut(s) 612, 1241
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 8 cut(s) 4, 130, 170, 214, 263, 299, 532, 1125
MfeI CAATTG 2 cut(s) 1407, 1428
MhlI GDGCHC 4 cut(s) 94, 395, 788, 1061
MlsI TGGCCA 1 cut(s) 1457
MluCI AATT 9 cut(s) 96, 534, 763, 796, 1032, 1152, 1284, 1407, 1428
MluNI TGGCCA 1 cut(s) 1457
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 46, 606
Mox20I TGGCCA 1 cut(s) 1457
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 1457
MseI TTAA 5 cut(s) 428, 906, 975, 1476, 1536
MslI CAYNNNNRTG 1 cut(s) 1230
Msp20I TGGCCA 1 cut(s) 1457
MspI CCGG 3 cut(s) 123, 201, 889
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 2 cut(s) 1407, 1428
Mva1269I GAATGC 1 cut(s) 349
MwoI GCNNNNNNNGC 3 cut(s) 182, 859, 1433
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 1 cut(s) 890
NdeI CATATG 1 cut(s) 1577
NdeII GATC 1 cut(s) 166
NlaIII CATG 6 cut(s) 643, 687, 866, 983, 1178, 1205
NlaIV GGNNCC 5 cut(s) 80, 127, 636, 637, 1213
PagI TCATGA 1 cut(s) 1174
PciSI GCTCTTC 2 cut(s) 183, 515
PctI GAATGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 159, 542, 833, 1049
PkrI GCNGC 4 cut(s) 130, 187, 190, 1042
PleI GAGTC 1 cut(s) 738
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 2 cut(s) 635, 1181
PshAI GACNNNNGTC 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 94
Psp5II RGGWCCY 2 cut(s) 635, 1181
PspN4I GGNNCC 5 cut(s) 80, 127, 636, 637, 1213
PspPI GGNCC 4 cut(s) 635, 718, 1181, 1275
PspPPI RGGWCCY 2 cut(s) 635, 1181
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
RsaI GTAC 3 cut(s) 319, 922, 1325
RsaNI GTAC 3 cut(s) 318, 921, 1324
RseI CAYNNNNRTG 1 cut(s) 1230
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 2 cut(s) 183, 515
SaqAI TTAA 5 cut(s) 428, 906, 975, 1476, 1536
SatI GCNGC 4 cut(s) 129, 186, 189, 1041
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 4 cut(s) 635, 718, 1181, 1275
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 4 cut(s) 94, 395, 788, 1061
SfaNI GCATC 4 cut(s) 861, 948, 1257, 1399
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 3 cut(s) 635, 718, 1181
SmiMI CAYNNNNRTG 1 cut(s) 1230
Sse9I AATT 9 cut(s) 96, 534, 763, 796, 1032, 1152, 1284, 1407, 1428
SsiI CCGC 9 cut(s) 111, 129, 186, 189, 275, 499, 587, 593, 609
SspDI GGCGCC 1 cut(s) 125
SspI AATATT 1 cut(s) 1318
SspMI CTAG 2 cut(s) 612, 1241
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 1 cut(s) 1240
TaaI ACNGT 7 cut(s) 78, 233, 397, 790, 998, 1232, 1481
TaqI TCGA 3 cut(s) 162, 225, 568
TasI AATT 9 cut(s) 96, 534, 763, 796, 1032, 1152, 1284, 1407, 1428
TatI WGTACW 2 cut(s) 920, 1323
TauI GCSGC 3 cut(s) 131, 188, 191
TfiI GAWTC 4 cut(s) 159, 542, 833, 1049
Tru1I TTAA 5 cut(s) 428, 906, 975, 1476, 1536
Tru9I TTAA 5 cut(s) 428, 906, 975, 1476, 1536
TscAI CASTG 3 cut(s) 1333, 1392, 1486
TseI GCWGC 1 cut(s) 1040
TspDTI ATGAA 5 cut(s) 753, 879, 891, 1191, 1351
TspRI CASTG 3 cut(s) 1333, 1392, 1486
VpaK11BI GGWCC 3 cut(s) 635, 718, 1181
XapI RAATTY 4 cut(s) 96, 534, 763, 796
XmaJI CCTAGG 1 cut(s) 1240
XmiI GTMKAC 1 cut(s) 1160
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 2 cut(s) 612, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.