MD02G1007900.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
496443 .. 499890
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1007900.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGCGGAGCACCGCGAGAGCTCCCATGCTCTCCCAGCAGAGAAACTACAGCCAAGGAAACAAGAACAAAAAGAAGGCGGCGACGGAGACGAAAAAGAAAAACAACGACTCGGTAAATTTCAATCCGGCGAGTTAGAGAGTTCTGTATCCGAGTTGAGACAGACGCGATTAGAAACCCCAACGGCGCCTTCGACGCTGGAAGTTTCAGGGAATGATCAGTTTGCAGGTTTGCAGCTTGAGTCCGTGTCACAGTCGATTGATGGAGCTGGATTGCAGGAGCAACTTGGGCTGAGCCACCAGGAAAATTTGGCAAGTGTAGCGAACCATAAGACTCCGAAGCAAAGTCAGACTCAGTTGACTGTTTATCCAACTCCGTTTTCAGAACTATCTCCAACTTCTGTCACTCAATCCATTTCATCTGCTCCAAGCCCAATTCCACTAGAACGAAGAGTTCCTCATGGGAAGACATCTGCTTCTGATGGTTACAACTGGCGGAAATATGGTCAGAAGCAAGTAAAGAGCCCTCAAGGTTCTCGAAGCTATTATAGGTGCACATTTTCTGAGTGTTATGCCAAGAAGATAGAACGCTGTGATCACTCAGGCCATGTAACAGAGATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAAAAGTATCTGCATAAAGGAAAGTAAACTTGCACTCTCTGCTGAGTGTGTAAGATATAGAGTTGCTGCTGCAGAACATTCCTGCAGAATAGTTAATGACTCAGAGTTGTCCACATCTTCAAAAGAACCTATTGAAGAAACACCCTCAATTCCTGAAAGAAAACGGCAGAGCTCAAGTGACTCTGATGATAATGGCGATGTTAAAATCAAGGAGGAACATGGTGATGGTGATGAGCCAGAACCCAAACGAAGAATGAAGAAAAGCAATTCAAAATATTCCGCTTCTCTCTCAAAACCTGGCAAGAAACCTAAATTAGTTGTGCATGCGGCTGGGGATGTTGGAATATCAGGCGACGGATACAGATGGCGCAAATATGGACAGAAGATGGTGAAAGGAAATCCTCATCCCAGGAACTACTACAGATGTACTTCTGCTGGGTGTCCAGTCCGGAAGCAGATTGAAACAGCCGTAGATAACTCAAGTGCTGTAATTATAACATACAAGGGGGTACATGACCATGAAATGCCTGTCCCTAAGAAGCGACATGGCCCTCCAAGCGCTCCTCTTGTTGCTGCTGCCGCTCCTGCTTCCATGAACAATTTGCATATCAAGAAAACCGATACAGACCCAAAGCCAATTTCGCCAACCCAGTGGTCGGTAGACACTGGTGGAGAATTGACAAGGGAGGCCTTGGACCTCGGAGGAGAGAAGGCAATGGAATCGGCTCGAACTCTTCTGAGCATTGGATTTGAAATAAAGCCTTGCTGA

Protein Analysis

474

Amino Acids

52.03

Weight (kDa)

8.82

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 160 - 215 4.3e-19 WRKY DNA -binding domain
WRKY PF03106 336 - 392 5.4e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
Acc36I ACCTGC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 1235
AccI GTMKAC 1 cut(s) 1314
AccII CGCG 2 cut(s) 15, 166
AccIII TCCGGA 1 cut(s) 1101
AciI CCGC 7 cut(s) 5, 13, 78, 493, 933, 980, 1233
AclWI GGATC 1 cut(s) 638
AcsI RAATTY 2 cut(s) 116, 304
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 1081, 1164
AfeI AGCGCT 1 cut(s) 1213
AfiI CCNNNNNNNGG 1 cut(s) 1309
AgsI TTSAA 6 cut(s) 122, 774, 788, 924, 1115, 1406
AjnI CCWGG 3 cut(s) 297, 949, 1061
AjuI GAANNNNNNNTTGG 6 cut(s) 172, 204, 361, 393, 1276, 1308
AluBI AGCT 5 cut(s) 21, 235, 266, 540, 825
AluI AGCT 5 cut(s) 21, 235, 266, 540, 825
Alw21I GWGCWC 4 cut(s) 12, 23, 554, 827
Alw26I GTCTC 2 cut(s) 81, 151
Alw44I GTGCAC 1 cut(s) 550
AlwI GGATC 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 1101
Aor51HI AGCGCT 1 cut(s) 1213
AoxI GGCC 3 cut(s) 601, 1201, 1341
ApaLI GTGCAC 1 cut(s) 550
ApeKI GCWGC 5 cut(s) 232, 719, 722, 1226, 1229
ApoI RAATTY 2 cut(s) 116, 304
AspLEI GCGC 3 cut(s) 187, 1023, 1214
AspS9I GGNCC 2 cut(s) 1202, 1348
AsuHPI GGTGA 3 cut(s) 887, 893, 1054
AvaII GGWCC 1 cut(s) 1348
BaeGI GKGCMC 1 cut(s) 554
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 3 cut(s) 23, 524, 827
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 4 cut(s) 12, 23, 554, 827
BbvI GCAGC 5 cut(s) 244, 706, 709, 1213, 1216
BccI CCATC 5 cut(s) 254, 473, 872, 1011, 1033
BceAI ACGGC 3 cut(s) 198, 833, 1106
BcgI CGANNNNNNTGC 2 cut(s) 1356, 1390
BciT130I CCWGG 3 cut(s) 299, 951, 1063
BciVI GTATCC 2 cut(s) 157, 1004
BclI TGATCA 2 cut(s) 214, 592
BcoDI GTCTC 2 cut(s) 81, 151
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 4 cut(s) 47, 723, 736, 1072
BfoI RGCGCY 2 cut(s) 188, 1215
BfuAI ACCTGC 1 cut(s) 215
BfuI GTATCC 2 cut(s) 157, 1004
BisI GCNGC 8 cut(s) 79, 233, 720, 723, 981, 1227, 1230, 1233
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 8 cut(s) 80, 234, 721, 724, 982, 1228, 1231, 1234
Bme1390I CCNGG 3 cut(s) 299, 951, 1063
Bme18I GGWCC 1 cut(s) 1348
BmgT120I GGNCC 2 cut(s) 1202, 1348
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 299, 951, 1063
BmrI ACTGGG 1 cut(s) 1297
BmuI ACTGGG 1 cut(s) 1297
BpiI GAAGAC 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 4 cut(s) 257, 510, 811, 1117
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 5 cut(s) 53, 650, 1061, 1344, 1351
BsaWI WCCGGW 1 cut(s) 1101
Bsc4I CCNNNNNNNGG 1 cut(s) 1309
Bse1I ACTGG 4 cut(s) 494, 1097, 1303, 1324
Bse3DI GCAATG 1 cut(s) 1374
BseAI TCCGGA 1 cut(s) 1101
BseBI CCWGG 3 cut(s) 299, 951, 1063
BseDI CCNNGG 5 cut(s) 53, 650, 1061, 1344, 1351
BseGI GGATG 2 cut(s) 994, 1057
BseLI CCNNNNNNNGG 1 cut(s) 1309
BseMI GCAATG 1 cut(s) 1374
BseMII CTCAG 7 cut(s) 281, 365, 552, 612, 687, 768, 1382
BseNI ACTGG 4 cut(s) 494, 1097, 1303, 1324
BseRI GAGGAG 2 cut(s) 1206, 1371
BseSI GKGCMC 1 cut(s) 554
BseXI GCAGC 5 cut(s) 244, 706, 709, 1213, 1216
BseYI CCCAGC 3 cut(s) 34, 983, 1088
Bsh1236I CGCG 2 cut(s) 15, 166
BshFI GGCC 3 cut(s) 603, 1203, 1343
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 4 cut(s) 12, 23, 554, 827
BsiSI CCGG 2 cut(s) 126, 1102
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 1 cut(s) 1309
BsmAI GTCTC 2 cut(s) 81, 151
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 1169
BsnI GGCC 3 cut(s) 603, 1203, 1343
Bsp1286I GDGCHC 5 cut(s) 12, 23, 524, 554, 827
Bsp13I TCCGGA 1 cut(s) 1101
Bsp143I GATC 3 cut(s) 214, 592, 643
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 7 cut(s) 5, 13, 78, 493, 933, 980, 1233
BspANI GGCC 3 cut(s) 603, 1203, 1343
BspCNI CTCAG 7 cut(s) 282, 364, 553, 611, 688, 767, 1383
BspEI TCCGGA 1 cut(s) 1101
BspFNI CGCG 2 cut(s) 15, 166
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 2 cut(s) 727, 740
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 1235
BsrDI GCAATG 1 cut(s) 1374
BsrI ACTGG 4 cut(s) 494, 1097, 1303, 1324
BssECI CCNNGG 5 cut(s) 53, 650, 1061, 1344, 1351
BssMI GATC 3 cut(s) 214, 592, 643
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 53, 1344
Bst2UI CCWGG 3 cut(s) 299, 951, 1063
Bst4CI ACNGT 2 cut(s) 252, 361
Bst6I CTCTTC 2 cut(s) 442, 1392
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 978
BstDEI CTNAG 8 cut(s) 290, 351, 561, 598, 696, 754, 1188, 1391
BstF5I GGATG 2 cut(s) 994, 1057
BstFNI CGCG 2 cut(s) 15, 166
BstH2I RGCGCY 2 cut(s) 188, 1215
BstHHI GCGC 3 cut(s) 187, 1023, 1214
BstKTI GATC 3 cut(s) 217, 595, 646
BstMAI GTCTC 2 cut(s) 81, 151
BstMBI GATC 3 cut(s) 214, 592, 643
BstMWI GCNNNNNNNGC 9 cut(s) 35, 193, 286, 317, 692, 1209, 1232, 1238, 1294
BstNI CCWGG 3 cut(s) 299, 951, 1063
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 297, 949, 1061
BstSFI CTRYAG 4 cut(s) 47, 723, 736, 1072
BstSLI GKGCMC 1 cut(s) 554
BstUI CGCG 2 cut(s) 15, 166
BstV1I GCAGC 5 cut(s) 244, 706, 709, 1213, 1216
BstV2I GAAGAC 1 cut(s) 470
BstXI CCANNNNNNTGG 1 cut(s) 1305
BsuI GTATCC 2 cut(s) 157, 1004
BsuRI GGCC 3 cut(s) 603, 1203, 1343
BtgZI GCGATG 1 cut(s) 864
BtsCI GGATG 2 cut(s) 994, 1057
BtsIMutI CAGTG 2 cut(s) 1310, 1317
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 978
CciI TCATGA 1 cut(s) 640
CfoI GCGC 3 cut(s) 187, 1023, 1214
Cfr13I GGNCC 2 cut(s) 1202, 1348
CseI GACGC 2 cut(s) 172, 202
Csp6I GTAC 2 cut(s) 1080, 1163
CviQI GTAC 2 cut(s) 1080, 1163
DdeI CTNAG 8 cut(s) 290, 351, 561, 598, 696, 754, 1188, 1391
DinI GGCGCC 1 cut(s) 186
DpnI GATC 3 cut(s) 216, 594, 645
DpnII GATC 3 cut(s) 214, 592, 643
Eam1104I CTCTTC 2 cut(s) 442, 1392
EarI CTCTTC 2 cut(s) 442, 1392
EciI GGCGGA 2 cut(s) 20, 508
Ecl136II GAGCTC 2 cut(s) 21, 825
Eco130I CCWWGG 2 cut(s) 53, 1344
Eco147I AGGCCT 1 cut(s) 1343
Eco24I GRGCYC 3 cut(s) 23, 524, 827
Eco47I GGWCC 1 cut(s) 1348
Eco47III AGCGCT 1 cut(s) 1213
Eco53kI GAGCTC 2 cut(s) 21, 825
EcoICRI GAGCTC 2 cut(s) 21, 825
EcoRII CCWGG 3 cut(s) 297, 949, 1061
EcoT14I CCWWGG 2 cut(s) 53, 1344
EcoT38I GRGCYC 3 cut(s) 23, 524, 827
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 53, 1344
Esp3I CGTCTC 1 cut(s) 81
FaqI GGGAC 1 cut(s) 1169
FbaI TGATCA 2 cut(s) 214, 592
FblI GTMKAC 1 cut(s) 1314
Fnu4HI GCNGC 8 cut(s) 79, 233, 720, 723, 981, 1227, 1230, 1233
FokI GGATG 2 cut(s) 1001, 1044
FriOI GRGCYC 3 cut(s) 23, 524, 827
Fsp4HI GCNGC 8 cut(s) 79, 233, 720, 723, 981, 1227, 1230, 1233
FspBI CTAG 1 cut(s) 440
GlaI GCGC 3 cut(s) 186, 1022, 1213
GluI GCNGC 8 cut(s) 79, 233, 720, 723, 981, 1227, 1230, 1233
GsaI CCCAGC 3 cut(s) 38, 987, 1092
HaeII RGCGCY 2 cut(s) 188, 1215
HaeIII GGCC 3 cut(s) 603, 1203, 1343
HapII CCGG 2 cut(s) 126, 1102
HgaI GACGC 2 cut(s) 172, 202
HhaI GCGC 3 cut(s) 187, 1023, 1214
Hin1I GRCGYC 1 cut(s) 185
Hin6I GCGC 3 cut(s) 185, 1021, 1212
HinP1I GCGC 3 cut(s) 185, 1021, 1212
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 7 cut(s) 108, 239, 331, 349, 752, 833, 1373
HpaII CCGG 2 cut(s) 126, 1102
HphI GGTGA 3 cut(s) 887, 893, 1054
Hpy166II GTNNAC 6 cut(s) 357, 552, 622, 680, 765, 1315
Hpy188III TCNNGA 5 cut(s) 534, 641, 806, 1102, 1264
Hpy8I GTNNAC 6 cut(s) 357, 552, 622, 680, 765, 1315
Hpy99I CGWCG 3 cut(s) 86, 196, 1010
HpyAV CCTTC 3 cut(s) 68, 198, 1357
HpyCH4III ACNGT 2 cut(s) 252, 361
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 193, 286, 317, 692, 1209, 1232, 1238, 1294
HpyF3I CTNAG 8 cut(s) 290, 351, 561, 598, 696, 754, 1188, 1391
Hsp92I GRCGYC 1 cut(s) 185
HspAI GCGC 3 cut(s) 185, 1021, 1212
KasI GGCGCC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 1101
Ksp22I TGATCA 2 cut(s) 214, 592
Kzo9I GATC 3 cut(s) 214, 592, 643
LmnI GCTCC 7 cut(s) 7, 26, 263, 277, 427, 1219, 1240
Lsp1109I GCAGC 5 cut(s) 244, 706, 709, 1213, 1216
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 5 cut(s) 246, 400, 482, 607, 830
MalI GATC 3 cut(s) 216, 594, 645
MbiI CCGCTC 1 cut(s) 1235
MboI GATC 3 cut(s) 214, 592, 643
MboII GAAGA 9 cut(s) 459, 475, 589, 762, 800, 915, 922, 1048, 1379
MhlI GDGCHC 5 cut(s) 12, 23, 524, 554, 827
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 6 cut(s) 102, 248, 325, 343, 746, 827
MmeI TCCRAC 3 cut(s) 392, 416, 973
MroI TCCGGA 1 cut(s) 1101
MseI TTAA 2 cut(s) 747, 855
MslI CAYNNNNRTG 3 cut(s) 639, 876, 1170
MspI CCGG 2 cut(s) 126, 1102
MspR9I CCNGG 3 cut(s) 299, 951, 1063
MvaI CCWGG 3 cut(s) 299, 951, 1063
MvnI CGCG 2 cut(s) 15, 166
MwoI GCNNNNNNNGC 9 cut(s) 35, 193, 286, 317, 692, 1209, 1232, 1238, 1294
NarI GGCGCC 1 cut(s) 185
NdeII GATC 3 cut(s) 214, 592, 643
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 246, 400, 830
NspI RCATGY 1 cut(s) 980
PaeI GCATGC 1 cut(s) 980
PagI TCATGA 1 cut(s) 640
PceI AGGCCT 1 cut(s) 1343
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 1 cut(s) 1373
PkrI GCNGC 8 cut(s) 80, 234, 721, 724, 982, 1228, 1231, 1234
PleI GAGTC 6 cut(s) 102, 247, 325, 343, 746, 827
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 6 cut(s) 102, 247, 325, 343, 746, 827
PsiI TTATAA 1 cut(s) 1148
Psp124BI GAGCTC 2 cut(s) 23, 827
Psp6I CCWGG 3 cut(s) 297, 949, 1061
PspFI CCCAGC 3 cut(s) 34, 983, 1088
PspGI CCWGG 3 cut(s) 297, 949, 1061
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 1202, 1348
PstI CTGCAG 2 cut(s) 727, 740
RsaI GTAC 2 cut(s) 1081, 1164
RsaNI GTAC 2 cut(s) 1080, 1163
RseI CAYNNNNRTG 3 cut(s) 639, 876, 1170
SacI GAGCTC 2 cut(s) 23, 827
SaqAI TTAA 2 cut(s) 747, 855
SatI GCNGC 8 cut(s) 79, 233, 720, 723, 981, 1227, 1230, 1233
Sau3AI GATC 3 cut(s) 214, 592, 643
Sau96I GGNCC 2 cut(s) 1202, 1348
SchI GAGTC 6 cut(s) 102, 248, 325, 343, 746, 827
ScrFI CCNGG 3 cut(s) 299, 951, 1063
SduI GDGCHC 5 cut(s) 12, 23, 524, 554, 827
SfcI CTRYAG 4 cut(s) 47, 723, 736, 1072
SfoI GGCGCC 1 cut(s) 186
SinI GGWCC 1 cut(s) 1348
SmiMI CAYNNNNRTG 3 cut(s) 639, 876, 1170
SmlI CTYRAG 4 cut(s) 236, 525, 826, 1132
SmoI CTYRAG 4 cut(s) 236, 525, 826, 1132
SphI GCATGC 1 cut(s) 980
SseBI AGGCCT 1 cut(s) 1343
SsiI CCGC 7 cut(s) 5, 13, 78, 493, 933, 980, 1233
SspDI GGCGCC 1 cut(s) 184
SspI AATATT 1 cut(s) 929
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 2 cut(s) 23, 827
StuI AGGCCT 1 cut(s) 1343
StyD4I CCNGG 3 cut(s) 297, 949, 1061
StyI CCWWGG 2 cut(s) 53, 1344
TaaI ACNGT 2 cut(s) 252, 361
TaqI TCGA 4 cut(s) 191, 254, 535, 1381
TatI WGTACW 1 cut(s) 1079
TauI GCSGC 3 cut(s) 81, 983, 1235
TfiI GAWTC 1 cut(s) 1373
Tru1I TTAA 2 cut(s) 747, 855
Tru9I TTAA 2 cut(s) 747, 855
TscAI CASTG 2 cut(s) 1310, 1324
TseFI GTSAC 3 cut(s) 246, 400, 830
TseI GCWGC 5 cut(s) 232, 719, 722, 1226, 1229
Tsp45I GTSAC 3 cut(s) 246, 400, 830
TspDTI ATGAA 4 cut(s) 405, 923, 1188, 1262
TspGWI ACGGA 4 cut(s) 99, 232, 363, 1023
TspRI CASTG 2 cut(s) 1310, 1324
VneI GTGCAC 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 1348
XapI RAATTY 2 cut(s) 116, 304
XceI RCATGY 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 1314
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.