Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Reverse (-)

375532 .. 379072

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGGAGCACCGCGAGAGCTCCCATGCTCTCCCAGCAGAGAAACTACAGCCAAGGAAACAAGAACAAAAAGAAGGCGGCGATGGAGACGAAGGCGATGACGAAGAAGGAAAGCAACGACTCGGTGAATTTCAACCCGGCGAGCTAGAGAGTTCTGTATCCGAGTTGAGACAGACGCAATTAGAAACCCCAACGGCGCCTTCGACGCTGGAAGTTTCAGAGAACGATCAGTTTGCAGGTATGCAGCTTGATTCCGTGTCACAGTCGATTGATGGAGCTGAATTGCAGGAGAAACTGGGGCTGAGCCACCAGGAAATTTTGGCAAGTGTAACGAACCAGGATATTAAGACTCCGAAGCAAAGTCGGACTCAGTTGACTGTTTATCCAACTCCGTTTTCAGAACTATCTCCCACTTCTGTCACTCAATCCATTTCATCTGCTCCAAGCCCAATTCCACTAGAACGAAGAGTTCCTCATGGGAAGACATCTGCTTCTGATGGTTACAACTGGCGGAAATATGGTCAGAAGCAAGTAAAGAGCCCTCAAGGTTCTCGAAGCTATTATAGGTGCACATTTTCTGAGTGTTACGCCAAGAAGATAGAATGCTGTGATCACTCAGGCCATGTAATAGAGATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCAGAAAAGTATCTGCATAAAGGAAAGTAAACTTGCACTCTCTGCTGAGTGTGTAAGATATAGTGTTGCTGCTGCAGAACATTCCTGCAGAATAGTTAATGACTCAGAGTTGTCCACATCTTCAAAAGAACCTATTCAAGAAACACCCTCAATTCCTGAAAGAAAACGGCAGAGCTCAAGTGACTCTGATGATAATGGCGATGTTAAAATCAAGGAGGAACATGGTGATGGTGATGAGCCAGAACCCAAACGAAGAATGAAGAAAAGCAATTCAGAATATTCCGCTTCTCTCTCAAAACCTGGCAAGAAACCTAAATTAGTTGTGCATGCGGCTGGGGATGTTGGAATATCAGGTGACGGATACAGATGGCGCAAATATGGACAGAAGATGGTGAAAGGAAATCCTCATCCCAGGTTGTTGAAGTCTCCACTTCCAAAACTGGAAAGCACGGTCACGCTAAGTGTCACTTTGTGGCAATTGATATTTTCAATGGAAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTTCCCCATGTCAACCGTACTGACTATCAGCTGATTGATATCTCCGAGGATGGCTTTGTAAGTTTTTTTAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

426

Amino Acids

47.36

Weight (kDa)

6.19

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 221	2.6e-18	WRKY DNA -binding domain
WRKY	PF03106	342 - 361	6e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	1 cut(s)	15
AciI	CCGC	6 cut(s)	5, 13, 78, 511, 951, 998
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	128, 315
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	1140
AfaI	GTAC	1 cut(s)	1219
AgsI	TTSAA	6 cut(s)	134, 792, 806, 1090, 1158, 1174
AjnI	CCWGG	4 cut(s)	309, 336, 967, 1079
AjuI	GAANNNNNNNTTGG	4 cut(s)	184, 216, 379, 411
AluBI	AGCT	8 cut(s)	21, 145, 247, 278, 558, 843, 1170, 1231
AluI	AGCT	8 cut(s)	21, 145, 247, 278, 558, 843, 1170, 1231
Alw21I	GWGCWC	4 cut(s)	12, 23, 572, 845
Alw26I	GTCTC	3 cut(s)	81, 163, 1098
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	619
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	244, 737, 740
ApoI	RAATTY	2 cut(s)	128, 315
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	2 cut(s)	199, 1041
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	137, 905, 911, 1034, 1072
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	3 cut(s)	23, 542, 845
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	4 cut(s)	12, 23, 572, 845
BbvI	GCAGC	3 cut(s)	256, 724, 727
BccI	CCATC	7 cut(s)	77, 266, 491, 890, 1029, 1051, 1244
BceAI	ACGGC	2 cut(s)	210, 851
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	4 cut(s)	311, 338, 969, 1081
BciVI	GTATCC	2 cut(s)	169, 1022
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	81, 163, 1098
BfaI	CTAG	2 cut(s)	146, 458
BfmI	CTRYAG	3 cut(s)	47, 741, 754
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	227
BfuI	GTATCC	2 cut(s)	169, 1022
BisI	GCNGC	5 cut(s)	79, 245, 738, 741, 999
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	5 cut(s)	80, 246, 739, 742, 1000
Bme1390I	CCNGG	5 cut(s)	138, 311, 338, 969, 1081
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	5 cut(s)	138, 311, 338, 969, 1081
BmrI	ACTGGG	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	528, 829
BpuMI	CCSGG	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	1238
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	53, 1079, 1245
Bse1I	ACTGG	3 cut(s)	300, 512, 1113
Bse8I	GATNNNNATC	1 cut(s)	1238
BseBI	CCWGG	4 cut(s)	311, 338, 969, 1081
BseDI	CCNNGG	3 cut(s)	53, 1079, 1245
BseGI	GGATG	4 cut(s)	1012, 1075, 1189, 1255
BseJI	GATNNNNATC	1 cut(s)	1238
BseMII	CTCAG	7 cut(s)	293, 383, 570, 630, 683, 705, 786
BseNI	ACTGG	3 cut(s)	300, 512, 1113
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	256, 724, 727
BseYI	CCCAGC	2 cut(s)	34, 1001
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	621
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	4 cut(s)	12, 23, 572, 845
BsiSI	CCGG	1 cut(s)	138
BsmAI	GTCTC	3 cut(s)	81, 163, 1098
BsmBI	CGTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	621
Bsp1286I	GDGCHC	5 cut(s)	12, 23, 542, 572, 845
Bsp143I	GATC	3 cut(s)	226, 610, 661
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	6 cut(s)	5, 13, 78, 511, 951, 998
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	7 cut(s)	294, 382, 571, 629, 682, 706, 785
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	2 cut(s)	745, 758
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	300, 512, 1113
BssECI	CCNNGG	3 cut(s)	53, 1079, 1245
BssMI	GATC	3 cut(s)	226, 610, 661
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	4 cut(s)	311, 338, 969, 1081
Bst4CI	ACNGT	4 cut(s)	264, 379, 1120, 1217
Bst6I	CTCTTC	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	143, 996
BstDEI	CTNAG	8 cut(s)	302, 369, 579, 616, 669, 714, 772, 1127
BstF5I	GGATG	4 cut(s)	1012, 1075, 1189, 1255
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	199, 1041
BstKTI	GATC	3 cut(s)	229, 613, 664
BstMAI	GTCTC	3 cut(s)	81, 163, 1098
BstMBI	GATC	3 cut(s)	226, 610, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 205, 710
BstNI	CCWGG	4 cut(s)	311, 338, 969, 1081
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	5 cut(s)	136, 309, 336, 967, 1079
BstSFI	CTRYAG	3 cut(s)	47, 741, 754
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	256, 724, 727
BstV2I	GAAGAC	1 cut(s)	488
BsuI	GTATCC	2 cut(s)	169, 1022
BsuRI	GGCC	1 cut(s)	621
BtgZI	GCGATG	3 cut(s)	96, 111, 882
BtsCI	GGATG	4 cut(s)	1012, 1075, 1189, 1255
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	143, 996
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	2 cut(s)	199, 1041
CseI	GACGC	2 cut(s)	184, 214
Csp6I	GTAC	1 cut(s)	1218
CviAII	CATG	7 cut(s)	26, 476, 623, 659, 890, 995, 1208
CviQI	GTAC	1 cut(s)	1218
DdeI	CTNAG	8 cut(s)	302, 369, 579, 616, 669, 714, 772, 1127
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	3 cut(s)	228, 612, 663
DpnII	GATC	3 cut(s)	226, 610, 661
DraIII	CACNNNGTG	1 cut(s)	1140
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	2 cut(s)	20, 526
Ecl136II	GAGCTC	2 cut(s)	21, 843
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	3 cut(s)	23, 542, 845
Eco32I	GATATC	1 cut(s)	1240
Eco53kI	GAGCTC	2 cut(s)	21, 843
EcoICRI	GAGCTC	2 cut(s)	21, 843
EcoRII	CCWGG	4 cut(s)	309, 336, 967, 1079
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	3 cut(s)	23, 542, 845
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	7 cut(s)	29, 479, 626, 662, 893, 998, 1211
FalI	AAGNNNNNCTT	2 cut(s)	1120, 1152
FatI	CATG	7 cut(s)	25, 475, 622, 658, 889, 994, 1207
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	5 cut(s)	79, 245, 738, 741, 999
FokI	GGATG	4 cut(s)	1019, 1062, 1176, 1262
FriOI	GRGCYC	3 cut(s)	23, 542, 845
Fsp4HI	GCNGC	5 cut(s)	79, 245, 738, 741, 999
FspBI	CTAG	2 cut(s)	146, 458
GlaI	GCGC	2 cut(s)	198, 1040
GluI	GCNGC	5 cut(s)	79, 245, 738, 741, 999
GsaI	CCCAGC	2 cut(s)	38, 1005
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	2 cut(s)	184, 214
HhaI	GCGC	2 cut(s)	199, 1041
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	29, 479, 626, 662, 893, 998, 1211
Hin6I	GCGC	2 cut(s)	197, 1039
HinP1I	GCGC	2 cut(s)	197, 1039
HincII	GTYRAC	2 cut(s)	375, 1213
HindII	GTYRAC	2 cut(s)	375, 1213
HindIII	AAGCTT	1 cut(s)	1168
HinfI	GANTC	6 cut(s)	120, 251, 349, 367, 770, 851
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	5 cut(s)	137, 905, 911, 1034, 1072
Hpy166II	GTNNAC	6 cut(s)	375, 570, 640, 698, 783, 1213
Hpy188III	TCNNGA	4 cut(s)	552, 659, 806, 824
Hpy8I	GTNNAC	6 cut(s)	375, 570, 640, 698, 783, 1213
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	5 cut(s)	68, 86, 101, 210, 1196
HpyCH4III	ACNGT	4 cut(s)	264, 379, 1120, 1217
HpyCH4V	TGCA	9 cut(s)	236, 244, 286, 570, 684, 704, 743, 756, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 205, 710
HpyF3I	CTNAG	8 cut(s)	302, 369, 579, 616, 669, 714, 772, 1127
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	29, 479, 626, 662, 893, 998, 1211
HspAI	GCGC	2 cut(s)	197, 1039
KasI	GGCGCC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	226, 610, 661
LmnI	GCTCC	4 cut(s)	7, 26, 275, 445
Lsp1109I	GCAGC	3 cut(s)	256, 724, 727
MaeI	CTAG	2 cut(s)	146, 458
MaeIII	GTNAC	9 cut(s)	258, 328, 418, 500, 584, 848, 1022, 1120, 1132
MalI	GATC	3 cut(s)	228, 612, 663
MboI	GATC	3 cut(s)	226, 610, 661
MboII	GAAGA	9 cut(s)	116, 477, 493, 607, 780, 933, 940, 1066, 1186
MfeI	CAATTG	2 cut(s)	1145, 1197
MhlI	GDGCHC	5 cut(s)	12, 23, 542, 572, 845
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	5 cut(s)	114, 343, 361, 764, 845
MmeI	TCCRAC	3 cut(s)	344, 410, 991
MnlI	CCTC	7 cut(s)	483, 552, 678, 826, 877, 1083, 1240
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	4 cut(s)	345, 765, 873, 1269
MslI	CAYNNNNRTG	2 cut(s)	657, 894
MspA1I	CMGCKG	1 cut(s)	1231
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	5 cut(s)	138, 311, 338, 969, 1081
MunI	CAATTG	2 cut(s)	1145, 1197
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	4 cut(s)	311, 338, 969, 1081
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	35, 205, 710
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	226, 610, 661
NlaIII	CATG	7 cut(s)	29, 479, 626, 662, 893, 998, 1211
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	6 cut(s)	258, 418, 848, 1022, 1120, 1132
NspI	RCATGY	1 cut(s)	998
PaeI	GCATGC	1 cut(s)	998
PagI	TCATGA	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	80, 246, 739, 742, 1000
PleI	GAGTC	5 cut(s)	114, 343, 361, 764, 845
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	5 cut(s)	114, 343, 361, 764, 845
Psp124BI	GAGCTC	2 cut(s)	23, 845
Psp6I	CCWGG	4 cut(s)	309, 336, 967, 1079
PspFI	CCCAGC	2 cut(s)	34, 1001
PspGI	CCWGG	4 cut(s)	309, 336, 967, 1079
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	2 cut(s)	745, 758
PvuII	CAGCTG	1 cut(s)	1231
RsaI	GTAC	1 cut(s)	1219
RsaNI	GTAC	1 cut(s)	1218
RseI	CAYNNNNRTG	2 cut(s)	657, 894
SacI	GAGCTC	2 cut(s)	23, 845
SaqAI	TTAA	4 cut(s)	345, 765, 873, 1269
SatI	GCNGC	5 cut(s)	79, 245, 738, 741, 999
Sau3AI	GATC	3 cut(s)	226, 610, 661
SchI	GAGTC	5 cut(s)	114, 343, 361, 764, 845
ScrFI	CCNGG	5 cut(s)	138, 311, 338, 969, 1081
SduI	GDGCHC	5 cut(s)	12, 23, 542, 572, 845
SfcI	CTRYAG	3 cut(s)	47, 741, 754
SfoI	GGCGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	657, 894
SmlI	CTYRAG	2 cut(s)	543, 844
SmoI	CTYRAG	2 cut(s)	543, 844
SphI	GCATGC	1 cut(s)	998
SsiI	CCGC	6 cut(s)	5, 13, 78, 511, 951, 998
SspDI	GGCGCC	1 cut(s)	196
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	2 cut(s)	146, 458
SstI	GAGCTC	2 cut(s)	23, 845
StyD4I	CCNGG	5 cut(s)	136, 309, 336, 967, 1079
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	4 cut(s)	264, 379, 1120, 1217
TaqI	TCGA	3 cut(s)	203, 266, 553
TauI	GCSGC	2 cut(s)	81, 1001
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	345, 765, 873, 1269
Tru9I	TTAA	4 cut(s)	345, 765, 873, 1269
TseFI	GTSAC	6 cut(s)	258, 418, 848, 1022, 1120, 1132
TseI	GCWGC	3 cut(s)	244, 737, 740
Tsp45I	GTSAC	6 cut(s)	258, 418, 848, 1022, 1120, 1132
TspDTI	ATGAA	3 cut(s)	423, 941, 1178
TspGWI	ACGGA	3 cut(s)	244, 381, 1041
VneI	GTGCAC	1 cut(s)	568
XapI	RAATTY	2 cut(s)	128, 315
XceI	RCATGY	1 cut(s)	998
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	2 cut(s)	146, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.