Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Forward (+)

91517825 .. 91521924

Gene Structure 4100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCCGAGCACCAGAGCTCCGATGCTCTGAAGAAAAACCGAGAGGAAGAAGGTGATGAAGAATTTGAAGAAGAAGAAGAAGATGAAGATGAAAGTGACAAAGAAGAAGAAAACCAAAGCGGAATTCCTTCTGTGGAGTTACAAAGCTCTGGAGCGGAGTCGAGAGACGCGCGATTAGAAACCCTAGCGGGGCCTCAGTTAACTGAGAAGGATCAGTGTGCAGATCTCACAGGTTTTGGGGTTAACTCTGCGACGAATGATGGAGCTCAATTTCAGGAGCCAATTGGGATAAGCCACCAGGAAGTTCTGGCAGCAGCACCGAACCAGCGTGCTCAGGGTCAGATACAAAATCTGCAACAGTTGAGTTCTTATCCAACTTCTTTGTCAGAACTGTCACCAACTTCTGTTACTCAATCCATTTCACCCGCTCCAAGCCCAATTCTTCCAGAACAAAGACCGTCTTTGCAGAAGGTCAATGGTTTATGTACGCCTGAGGAGGACAAACGAATTTCTTCTGACTTTAAGTCTATATCGCCTGTTCCTCTTGTAAAAACATCTGCTTCAGACGGTTACAACTGGCGAAAATATGGCCAGAAGCAAGTGAAGTGTCCTCCAGGTTCGCGAAGTTATTACAGGTGCACATTTTCTGAGTGTTCTGTCAAAAAGATTGAATGCTGCGATATTTCAGGCCATATAACCGAAATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAGGAGTAACTGCACAAGGGAAATCAAGGTTGCATCTTCTGCTGAGTGTGTGGGCAATAGTGTTTTAGAATATCCCTGCGAAATACTGAATGATTCAGAGCTGCCTACGACTTCGAAAGAACCTATACAAGAAAAGAAAACCCAATTCCTGAAAGAAAACGACAGAACTCAAATGATTCTGATGGTAATGGTGATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

313

Amino Acids

34.74

Weight (kDa)

4.7

Isoelectric Point (pI)

71.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	189 - 244	3e-18	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	155, 428
AccII	CGCG	3 cut(s)	170, 172, 622
AciI	CCGC	4 cut(s)	120, 155, 188, 426
AclWI	GGATC	2 cut(s)	219, 725
AcoI	YGGCCR	2 cut(s)	3, 589
AcsI	RAATTY	3 cut(s)	62, 123, 507
AcuI	CTGAAG	2 cut(s)	50, 546
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	189, 741
AgsI	TTSAA	2 cut(s)	68, 671
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	297, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	4 cut(s)	18, 147, 266, 841
AluI	AGCT	4 cut(s)	18, 147, 266, 841
Alw21I	GWGCWC	5 cut(s)	12, 20, 268, 334, 641
Alw26I	GTCTC	1 cut(s)	159
Alw44I	GTGCAC	1 cut(s)	637
AlwI	GGATC	2 cut(s)	219, 725
AoxI	GGCC	4 cut(s)	3, 191, 589, 688
ApaLI	GTGCAC	1 cut(s)	637
ApeKI	GCWGC	4 cut(s)	311, 314, 675, 841
ApoI	RAATTY	3 cut(s)	62, 123, 507
Asp700I	GAANNNNTTC	2 cut(s)	127, 511
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	65, 387, 414
AsuII	TTCGAA	1 cut(s)	854
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	20, 268
Bbv12I	GWGCWC	5 cut(s)	12, 20, 268, 334, 641
BbvI	GCAGC	4 cut(s)	323, 326, 662, 828
BccI	CCATC	2 cut(s)	254, 916
BciT130I	CCWGG	2 cut(s)	299, 615
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	312, 315, 676, 842
BlsI	GCNGC	4 cut(s)	313, 316, 677, 843
Bme1390I	CCNGG	2 cut(s)	299, 615
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	192, 279
BmrFI	CCNGG	2 cut(s)	299, 615
BmsI	GCATC	2 cut(s)	13, 782
BpmI	CTGGAG	2 cut(s)	171, 597
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	854
BsaJI	CCNNGG	1 cut(s)	737
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 741
Bse1I	ACTGG	1 cut(s)	581
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	299, 615
BseDI	CCNNGG	1 cut(s)	737
BseLI	CCNNNNNNNGG	2 cut(s)	189, 741
BseMII	CTCAG	6 cut(s)	195, 209, 347, 483, 639, 774
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	509, 757
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	323, 326, 662, 828
BsgI	GTGCAG	2 cut(s)	240, 736
Bsh1236I	CGCG	3 cut(s)	170, 172, 622
BshFI	GGCC	4 cut(s)	5, 193, 591, 690
BsiHKAI	GWGCWC	5 cut(s)	12, 20, 268, 334, 641
BslI	CCNNNNNNNGG	2 cut(s)	189, 741
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	4 cut(s)	5, 193, 591, 690
Bsp119I	TTCGAA	1 cut(s)	854
Bsp1286I	GDGCHC	5 cut(s)	12, 20, 268, 334, 641
Bsp143I	GATC	3 cut(s)	211, 223, 730
Bsp68I	TCGCGA	1 cut(s)	622
BspACI	CCGC	4 cut(s)	120, 155, 188, 426
BspANI	GGCC	4 cut(s)	5, 193, 591, 690
BspCNI	CTCAG	6 cut(s)	196, 208, 346, 484, 640, 775
BspFNI	CGCG	3 cut(s)	170, 172, 622
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	192, 279
BspPI	GGATC	2 cut(s)	219, 725
BspT104I	TTCGAA	1 cut(s)	854
BsrBI	CCGCTC	2 cut(s)	155, 428
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	3 cut(s)	211, 223, 730
Bst2UI	CCWGG	2 cut(s)	299, 615
Bst4CI	ACNGT	4 cut(s)	360, 393, 459, 569
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	854
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	6 cut(s)	195, 204, 333, 492, 648, 783
BstFNI	CGCG	3 cut(s)	170, 172, 622
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	214, 226, 733
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	211, 223, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNI	CCWGG	2 cut(s)	299, 615
BstSCI	CCNGG	2 cut(s)	297, 613
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	3 cut(s)	170, 172, 622
BstV1I	GCAGC	4 cut(s)	323, 326, 662, 828
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	5, 193, 591, 690
BtsIMutI	CAGTG	1 cut(s)	221
BtuMI	TCGCGA	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	1 cut(s)	728
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	6 cut(s)	195, 204, 333, 492, 648, 783
DpnI	GATC	3 cut(s)	213, 225, 732
DpnII	GATC	3 cut(s)	211, 223, 730
DriI	GACNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	2 cut(s)	3, 589
Eam1105I	GACNNNNNGTC	1 cut(s)	523
Ecl136II	GAGCTC	2 cut(s)	18, 266
Eco24I	GRGCYC	2 cut(s)	20, 268
Eco53kI	GAGCTC	2 cut(s)	18, 266
Eco57I	CTGAAG	2 cut(s)	50, 546
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	18, 266
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	297, 613
EcoT38I	GRGCYC	2 cut(s)	20, 268
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	731
FaiI	YATR	9 cut(s)	484, 530, 588, 693, 695, 723, 729, 866, 940
FalI	AAGNNNNNCTT	2 cut(s)	445, 477
FatI	CATG	1 cut(s)	727
FauI	CCCGC	2 cut(s)	181, 433
Fnu4HI	GCNGC	4 cut(s)	312, 315, 676, 842
FriOI	GRGCYC	2 cut(s)	20, 268
Fsp4HI	GCNGC	4 cut(s)	312, 315, 676, 842
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	312, 315, 676, 842
GsuI	CTGGAG	2 cut(s)	171, 597
HaeIII	GGCC	4 cut(s)	5, 193, 591, 690
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	731
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	2 cut(s)	201, 244
HindII	GTYRAC	2 cut(s)	201, 244
HinfI	GANTC	3 cut(s)	158, 833, 916
HpaI	GTTAAC	2 cut(s)	201, 244
HphI	GGTGA	3 cut(s)	65, 387, 414
Hpy166II	GTNNAC	4 cut(s)	201, 244, 639, 709
Hpy188III	TCNNGA	7 cut(s)	150, 162, 275, 446, 621, 728, 889
Hpy8I	GTNNAC	4 cut(s)	201, 244, 639, 709
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	4 cut(s)	44, 138, 202, 463
HpyCH4III	ACNGT	4 cut(s)	360, 393, 459, 569
HpyCH4V	TGCA	6 cut(s)	221, 355, 466, 639, 753, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	6 cut(s)	195, 204, 333, 492, 648, 783
Hsp92II	CATG	1 cut(s)	731
HspAI	GCGC	1 cut(s)	170
KspAI	GTTAAC	2 cut(s)	201, 244
Kzo9I	GATC	3 cut(s)	211, 223, 730
LmnI	GCTCC	5 cut(s)	23, 152, 263, 277, 433
Lsp1109I	GCAGC	4 cut(s)	323, 326, 662, 828
LweI	GCATC	2 cut(s)	13, 782
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	6 cut(s)	95, 138, 393, 406, 569, 746
MalI	GATC	3 cut(s)	213, 225, 732
MbiI	CCGCTC	2 cut(s)	155, 428
MboI	GATC	3 cut(s)	211, 223, 730
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	5 cut(s)	12, 20, 268, 334, 641
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	8 cut(s)	62, 123, 269, 282, 438, 507, 702, 884
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	37, 204, 487, 490, 552, 621, 735, 747
Mox20I	TGGCCA	1 cut(s)	591
MroXI	GAANNNNTTC	2 cut(s)	127, 511
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	3 cut(s)	200, 243, 522
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	299, 615
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	2 cut(s)	299, 615
MvnI	CGCG	3 cut(s)	170, 172, 622
MwoI	GCNNNNNNNGC	1 cut(s)	779
NdeII	GATC	3 cut(s)	211, 223, 730
NlaIII	CATG	1 cut(s)	731
NlaIV	GGNNCC	2 cut(s)	192, 279
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	95, 393
NruI	TCGCGA	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	854
PagI	TCATGA	1 cut(s)	727
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	2 cut(s)	127, 511
PfeI	GAWTC	2 cut(s)	833, 916
PkrI	GCNGC	4 cut(s)	313, 316, 677, 843
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	2 cut(s)	20, 268
Psp6I	CCWGG	2 cut(s)	297, 613
PspGI	CCWGG	2 cut(s)	297, 613
PspN4I	GGNNCC	2 cut(s)	192, 279
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	622
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	2 cut(s)	20, 268
SaqAI	TTAA	3 cut(s)	200, 243, 522
SatI	GCNGC	4 cut(s)	312, 315, 676, 842
Sau3AI	GATC	3 cut(s)	211, 223, 730
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	299, 615
SduI	GDGCHC	5 cut(s)	12, 20, 268, 334, 641
SfaNI	GCATC	2 cut(s)	13, 782
SfuI	TTCGAA	1 cut(s)	854
SmiMI	CAYNNNNRTG	1 cut(s)	726
Sse9I	AATT	8 cut(s)	62, 123, 269, 282, 438, 507, 702, 884
SsiI	CCGC	4 cut(s)	120, 155, 188, 426
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	2 cut(s)	20, 268
StyD4I	CCNGG	2 cut(s)	297, 613
TaaI	ACNGT	4 cut(s)	360, 393, 459, 569
TaqI	TCGA	2 cut(s)	161, 854
TasI	AATT	8 cut(s)	62, 123, 269, 282, 438, 507, 702, 884
TfiI	GAWTC	2 cut(s)	833, 916
Tru1I	TTAA	3 cut(s)	200, 243, 522
Tru9I	TTAA	3 cut(s)	200, 243, 522
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	2 cut(s)	95, 393
TseI	GCWGC	4 cut(s)	311, 314, 675, 841
Tsp45I	GTSAC	2 cut(s)	95, 393
TspDTI	ATGAA	3 cut(s)	72, 99, 105
TspRI	CASTG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	637
XapI	RAATTY	3 cut(s)	62, 123, 507
XmnI	GAANNNNTTC	2 cut(s)	127, 511
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.