Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Forward (+)

55533745 .. 55535889

Gene Structure 2145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0462400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGAGGGATTGCTACATGCATTCTATTGCTGTTCAGACAGTCTTGCTAATTGACCCATGTAACATATATAGCAAAATGGATTTTTTTGGACCATGGGCTTTCTTCTTTGAGAACATGTGTGCTTGTCACAACATTGCTGCCTGCAATGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTAATTGCTAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGGTTAGGCCACTTCTCGTTTCTGTTGCAATCTCAACATGGATTAAAGTACCACTCACTTTGTGCGAATCAGCATTTAGAATGAGACTCTTCCTGCATACTTATTGGGTGCTTGGTTTCAGAAGCCAGCTAATTGGATTCTTCACTCTTTTGCAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGGTGAAGAGGCCGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAAATCCTTTGTGGTAAGGGTGCATTGGATCAGTATATTTCAAACAATAAAGAGAAGGATGTTCGGACTGCAACCACAGAAACAGAAGGGTCTGATGTAGATCCCGAAGGGGAAGCTGAGCTTTCTTCTGTTGTTGCTAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

220

Amino Acids

24.28

Weight (kDa)

5.24

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ClpB_D2-small	PF10431	48 - 91	7.3e-07	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	552, 611
AcoI	YGGCCR	1 cut(s)	499
AdeI	CACNNNGTG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	5 cut(s)	400, 515, 632, 637, 657
AluI	AGCT	5 cut(s)	400, 515, 632, 637, 657
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	552, 611
AoxI	GGCC	3 cut(s)	278, 483, 499
ApeKI	GCWGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	458, 488
AsuNHI	GCTAGC	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	141
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	451
BmtI	GCTAGC	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	95, 502
Bse1I	ACTGG	2 cut(s)	220, 448
Bse3DI	GCAATG	2 cut(s)	135, 154
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	95, 502
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	615
BseMI	GCAATG	2 cut(s)	135, 154
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	2 cut(s)	220, 448
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	3 cut(s)	280, 485, 501
BsmAI	GTCTC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	280, 485, 501
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	544, 616
Bsp1720I	GCTNAGC	1 cut(s)	633
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	3 cut(s)	280, 485, 501
BspCNI	CTCAG	1 cut(s)	625
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	552, 611
BsrDI	GCAATG	2 cut(s)	135, 154
BsrI	ACTGG	2 cut(s)	220, 448
BssECI	CCNNGG	2 cut(s)	95, 502
BssMI	GATC	2 cut(s)	544, 616
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	365, 474
BstC8I	GCNNGC	3 cut(s)	145, 398, 655
BstDEI	CTNAG	2 cut(s)	192, 633
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	2 cut(s)	547, 619
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	2 cut(s)	544, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	22, 121
BstSCI	CCNGG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	616
BstXI	CCANNNNNNTGG	2 cut(s)	404, 509
BstYI	RGATCY	1 cut(s)	616
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	3 cut(s)	280, 485, 501
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	145, 398, 655
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	320
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	6 cut(s)	19, 60, 96, 118, 265, 309
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	192, 633
DpnI	GATC	2 cut(s)	546, 618
DpnII	GATC	2 cut(s)	544, 616
DraIII	CACNNNGTG	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	365, 474
EarI	CTCTTC	2 cut(s)	365, 474
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	6 cut(s)	22, 63, 99, 121, 268, 312
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	6 cut(s)	18, 59, 95, 117, 264, 308
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	280, 485, 501
Hin1II	CATG	6 cut(s)	22, 63, 99, 121, 268, 312
HinfI	GANTC	4 cut(s)	338, 357, 408, 427
HphI	GGTGA	2 cut(s)	458, 488
Hpy188I	TCNGA	4 cut(s)	39, 392, 582, 610
Hpy188III	TCNNGA	2 cut(s)	431, 620
HpyAV	CCTTC	3 cut(s)	565, 596, 617
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	9 cut(s)	22, 147, 160, 299, 367, 424, 464, 539, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	192, 633
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	6 cut(s)	22, 63, 99, 121, 268, 312
Kzo9I	GATC	2 cut(s)	544, 616
LmnI	GCTCC	1 cut(s)	512
LpnPI	CCDG	8 cut(s)	157, 201, 377, 410, 429, 444, 488, 515
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	62, 128
MalI	GATC	2 cut(s)	546, 618
MboI	GATC	2 cut(s)	544, 616
MboII	GAAGA	6 cut(s)	16, 97, 352, 403, 491, 633
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	5 cut(s)	51, 186, 237, 402, 471
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	2 cut(s)	178, 469
MnlI	CCTC	3 cut(s)	174, 265, 475
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	2 cut(s)	254, 315
Msp20I	TGGCCA	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	544, 616
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	6 cut(s)	22, 63, 99, 121, 268, 312
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	2 cut(s)	22, 121
PciI	ACATGT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	338, 408, 427
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	254, 315
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	544, 616
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	276, 402, 438, 517, 634, 639, 659
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	5 cut(s)	51, 186, 237, 402, 471
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	438
TasI	AATT	5 cut(s)	51, 186, 237, 402, 471
TfiI	GAWTC	3 cut(s)	338, 408, 427
Tru1I	TTAA	2 cut(s)	254, 315
Tru9I	TTAA	2 cut(s)	254, 315
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	182, 272
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	2 cut(s)	22, 121
XspI	CTAG	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.