Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Forward (+)

55533347 .. 55533682

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0462300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTTCAGGATGCTAAAAAGTATACTGTATTTTGGGTGATGAAAGAGTATGGGCTGCCTGAATCTTGGGTTAAACTCTTTGGGTTTAATATACACGATTTACCAGATGTGTTCAATTCATTCTTTAGCCGCCTTTTTTGGGATCCTATTTTCATTGCAGAAGACGGTACAGTTGTGATCAAACTGCGTACCCAGAGGGAGTTGATCTGGATTAAATGCCGTAAAGAAGAGAAGCCATTCTGCACCGACCGGTACCGTCTTGAGGAGGTGCCGGAACATCAGTATGCATTTTATGCCATTTGGTATGATGAAACTCTAGTTTCGATACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

111

Amino Acids

13.59

Weight (kDa)

5.22

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	2 cut(s)	252, 268
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	137, 150
AfaI	GTAC	3 cut(s)	169, 190, 254
AfiI	CCNNNNNNNGG	2 cut(s)	139, 262
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	115
AlwI	GGATC	2 cut(s)	137, 150
ApeKI	GCWGC	1 cut(s)	55
AsiGI	ACCGGT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	2 cut(s)	252, 268
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	177
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	56, 130
BlsI	GCNGC	2 cut(s)	57, 131
BmiI	GGNNCC	3 cut(s)	144, 254, 270
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 262
Bse118I	RCCGGY	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	139, 262
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	250
BshNI	GGYRCC	2 cut(s)	252, 268
BshTI	ACCGGT	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	250, 272
BslI	CCNNNNNNNGG	2 cut(s)	139, 262
Bsp143I	GATC	3 cut(s)	142, 177, 204
BspACI	CCGC	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	144, 254, 270
BspPI	GGATC	2 cut(s)	137, 150
BspT107I	GGYRCC	2 cut(s)	252, 268
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	3 cut(s)	142, 177, 204
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	28, 167, 172, 257
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	3 cut(s)	145, 180, 207
BstMBI	GATC	3 cut(s)	142, 177, 204
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BstZ17I	GTATAC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	168, 189, 253
CspAI	ACCGGT	1 cut(s)	249
CviJI	RGCY	3 cut(s)	55, 129, 235
CviKI_1	RGCY	3 cut(s)	55, 129, 235
CviQI	GTAC	3 cut(s)	168, 189, 253
DpnI	GATC	3 cut(s)	144, 179, 206
DpnII	GATC	3 cut(s)	142, 177, 204
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	289
FaiI	YATR	6 cut(s)	24, 51, 92, 285, 294, 306
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	56, 130
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	56, 130
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	56, 130
HapII	CCGG	2 cut(s)	250, 272
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	250, 272
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	8, 208, 260
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	4 cut(s)	28, 167, 172, 257
HpyCH4V	TGCA	3 cut(s)	158, 243, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	142, 177, 204
LpnPI	CCDG	6 cut(s)	72, 117, 193, 206, 263, 285
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	317
MalI	GATC	3 cut(s)	144, 179, 206
MboI	GATC	3 cut(s)	142, 177, 204
MboII	GAAGA	2 cut(s)	173, 239
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	3 cut(s)	189, 256, 259
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	3 cut(s)	72, 87, 213
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	250, 272
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	3 cut(s)	142, 177, 204
NlaIV	GGNNCC	3 cut(s)	144, 254, 270
NsiI	ATGCAT	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	57, 131
PspN4I	GGNNCC	3 cut(s)	144, 254, 270
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	169, 190, 254
RsaNI	GTAC	3 cut(s)	168, 189, 253
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	72, 87, 213
SatI	GCNGC	2 cut(s)	56, 130
Sau3AI	GATC	3 cut(s)	142, 177, 204
SetI	ASST	2 cut(s)	270, 331
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	317
TaaI	ACNGT	4 cut(s)	28, 167, 172, 257
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	72, 87, 213
Tru9I	TTAA	3 cut(s)	72, 87, 213
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	56, 108, 142, 324
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.