Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Reverse (-)

1012377 .. 1016521

Gene Structure 4145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCCGAGCACCAGAGCTCCGATGCTCTGAAGAAAAACCGAGAGGAAGAAGATGATGAAGAATTCGAAGAAGAAGAAGAAGATGAAGATGAAAGTGACAAAGAAGAAGAAAACCAAAGCGGAATTCCTTCTGTGGAGTTACAAAGCTCTGGAGCGGAGTCGAGAGACGCGCGATTTGAAACCCTAGCGGTGCCTCAGTTAACTGAGAAGGATCAGTGTGCAGAGAAGGCGGTTGTTTTTTTTGGTGTTGATCTCACAGGTTTTGGGGTTAACTCTGCGACGAATGATGGAGCTCAATTTCAGGAGCCACTTGGGATAAGCCACCAGGAAGTTTTGGCAGCAGCACCGAACCAGCCTGCTCAGGGTCAGATACAAAATCTGCAACAGTTGAGTACTTATCCAACTTCTTTGTCAGAACTGTCACCAACTTCTGTTACTCAATCCATTTCACCCGCTCCAAGCCCAATTCTTCCAGAACAAAGACTGTCATTGCAGAAGGTCAATGGTTTATGTACGCCTGAGGAGGACAAACAAATTTCTTCTGACTTTAAGTCTATATCGCCTGTTCCTCTTGTAAAAACATCTGCTTCAGATGGTTACAACTGGCGAAAATATGGCCAGAAGCAAGTGAAGTGTCCTCCAGGTTCGCGAAGTTATTACAGGTGCACATTTTCTGAGTGTTCTGTCAAAAAGATTGAATGCTGCAATATTTCAGGCCATATAACCGAAATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAGGAGTAACTGCACAAGGGAAATCAAGGTTGCATCTTCTGCTGAGTGCGTGGGCAATACTGTTATAGAATATCCCTGCGAAATACTGAATGATTCAGAGCTGCCTACGACTTCGAAAGAACCTATACAAGAAAACCCAATTCCTGAAAGAAAACGACAGAACTCAAATGACTCTGATGGTAATGGTGACGTTATGATCAAGGAGGAGCATATCAATGAACCAGAATCCAAAAGAAGATTGAAGAAAAGTAACTCAGAATATTCAGATTCTCTCTTGAAACCTGGCAAGAAACCTAAGTTTGTAGTGCATGCAGCGGGGGATGTGGGAATATCAGGTGATGGATATAGGTGGCGCAAGTATGGACAGAAGATGGTGAAGGGAAACCCCCATCCCAGGTGCATGCCAGTTCTATCATTTGTTTTCTTTTGTTCTTTTTGTTTGACATATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

406

Amino Acids

45.23

Weight (kDa)

5.04

Isoelectric Point (pI)

69.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	198 - 253	4.8e-18	WRKY DNA -binding domain
WRKY	PF03106	369 - 389	4.7e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccBSI	CCGCTC	2 cut(s)	155, 455
AccII	CGCG	3 cut(s)	170, 172, 649
AciI	CCGC	6 cut(s)	120, 155, 188, 230, 453, 1082
AclWI	GGATC	2 cut(s)	219, 752
AcoI	YGGCCR	2 cut(s)	3, 616
AcsI	RAATTY	3 cut(s)	62, 123, 534
AcuI	CTGAAG	2 cut(s)	50, 573
AfaI	GTAC	2 cut(s)	394, 514
AfiI	CCNNNNNNNGG	3 cut(s)	362, 768, 1161
AgsI	TTSAA	4 cut(s)	179, 698, 1009, 1045
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	4 cut(s)	324, 640, 1048, 1160
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	4 cut(s)	18, 147, 293, 868
AluI	AGCT	4 cut(s)	18, 147, 293, 868
Alw21I	GWGCWC	4 cut(s)	12, 20, 295, 668
Alw26I	GTCTC	1 cut(s)	159
Alw44I	GTGCAC	1 cut(s)	664
AlwI	GGATC	2 cut(s)	219, 752
AoxI	GGCC	3 cut(s)	3, 616, 715
ApaLI	GTGCAC	1 cut(s)	664
ApeKI	GCWGC	5 cut(s)	338, 341, 702, 868, 1079
ApoI	RAATTY	3 cut(s)	62, 123, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	172, 1122
AsuHPI	GGTGA	5 cut(s)	414, 441, 965, 1115, 1153
AsuII	TTCGAA	2 cut(s)	66, 881
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	20, 295
Bbv12I	GWGCWC	4 cut(s)	12, 20, 295, 668
BbvI	GCAGC	5 cut(s)	350, 353, 689, 855, 1091
BccI	CCATC	6 cut(s)	281, 587, 938, 1100, 1132, 1164
BciT130I	CCWGG	4 cut(s)	326, 642, 1050, 1162
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	5 cut(s)	339, 342, 703, 869, 1080
BlsI	GCNGC	5 cut(s)	340, 343, 704, 870, 1081
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	4 cut(s)	326, 642, 1050, 1162
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmiI	GGNNCC	2 cut(s)	192, 306
BmrFI	CCNGG	4 cut(s)	326, 642, 1050, 1162
BmsI	GCATC	2 cut(s)	13, 809
BpmI	CTGGAG	2 cut(s)	171, 624
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	2 cut(s)	66, 881
BsaJI	CCNNGG	2 cut(s)	764, 1160
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 768, 1161
Bse1I	ACTGG	2 cut(s)	608, 1172
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	4 cut(s)	326, 642, 1050, 1162
BseDI	CCNNGG	2 cut(s)	764, 1160
BseGI	GGATG	2 cut(s)	1093, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	362, 768, 1161
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	7 cut(s)	195, 209, 374, 510, 666, 801, 1035
BseNI	ACTGG	2 cut(s)	608, 1172
BseRI	GAGGAG	3 cut(s)	536, 784, 986
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	5 cut(s)	350, 353, 689, 855, 1091
BsgI	GTGCAG	2 cut(s)	240, 763
Bsh1236I	CGCG	3 cut(s)	170, 172, 649
BshFI	GGCC	3 cut(s)	5, 618, 717
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	4 cut(s)	12, 20, 295, 668
BslI	CCNNNNNNNGG	3 cut(s)	362, 768, 1161
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	3 cut(s)	5, 618, 717
Bsp119I	TTCGAA	2 cut(s)	66, 881
Bsp1286I	GDGCHC	4 cut(s)	12, 20, 295, 668
Bsp143I	GATC	4 cut(s)	211, 250, 757, 963
Bsp68I	TCGCGA	1 cut(s)	649
BspACI	CCGC	6 cut(s)	120, 155, 188, 230, 453, 1082
BspANI	GGCC	3 cut(s)	5, 618, 717
BspCNI	CTCAG	7 cut(s)	196, 208, 373, 511, 667, 802, 1034
BspFNI	CGCG	3 cut(s)	170, 172, 649
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	192, 306
BspPI	GGATC	2 cut(s)	219, 752
BspT104I	TTCGAA	2 cut(s)	66, 881
BspT107I	GGYRCC	1 cut(s)	190
BsrBI	CCGCTC	2 cut(s)	155, 455
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	608, 1172
BssECI	CCNNGG	2 cut(s)	764, 1160
BssMI	GATC	4 cut(s)	211, 250, 757, 963
Bst2UI	CCWGG	4 cut(s)	326, 642, 1050, 1162
Bst4CI	ACNGT	4 cut(s)	387, 420, 486, 829
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBI	TTCGAA	2 cut(s)	66, 881
BstC8I	GCNNGC	3 cut(s)	357, 1077, 1169
BstDEI	CTNAG	8 cut(s)	195, 204, 360, 519, 675, 810, 1021, 1062
BstF5I	GGATG	2 cut(s)	1093, 1156
BstFNI	CGCG	3 cut(s)	170, 172, 649
BstHHI	GCGC	2 cut(s)	172, 1122
BstKTI	GATC	4 cut(s)	214, 253, 760, 966
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	4 cut(s)	211, 250, 757, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 806
BstNI	CCWGG	4 cut(s)	326, 642, 1050, 1162
BstNSI	RCATGY	2 cut(s)	1079, 1171
BstSCI	CCNGG	4 cut(s)	324, 640, 1048, 1160
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	3 cut(s)	170, 172, 649
BstV1I	GCAGC	5 cut(s)	350, 353, 689, 855, 1091
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	3 cut(s)	5, 618, 717
BtsCI	GGATG	2 cut(s)	1093, 1156
BtsIMutI	CAGTG	1 cut(s)	221
BtuMI	TCGCGA	1 cut(s)	649
Cac8I	GCNNGC	3 cut(s)	357, 1077, 1169
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	2 cut(s)	172, 1122
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	393, 513
CviAII	CATG	3 cut(s)	755, 1076, 1168
CviQI	GTAC	2 cut(s)	393, 513
DdeI	CTNAG	8 cut(s)	195, 204, 360, 519, 675, 810, 1021, 1062
DpnI	GATC	4 cut(s)	213, 252, 759, 965
DpnII	GATC	4 cut(s)	211, 250, 757, 963
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	3, 616
Eam1105I	GACNNNNNGTC	1 cut(s)	550
Ecl136II	GAGCTC	2 cut(s)	18, 293
Eco24I	GRGCYC	2 cut(s)	20, 295
Eco53kI	GAGCTC	2 cut(s)	18, 293
Eco57I	CTGAAG	2 cut(s)	50, 573
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	2 cut(s)	18, 293
EcoRI	GAATTC	2 cut(s)	62, 123
EcoRII	CCWGG	4 cut(s)	324, 640, 1048, 1160
EcoT38I	GRGCYC	2 cut(s)	20, 295
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	758, 1079, 1171
FatI	CATG	3 cut(s)	754, 1075, 1167
FauI	CCCGC	2 cut(s)	460, 1075
FbaI	TGATCA	1 cut(s)	963
Fnu4HI	GCNGC	5 cut(s)	339, 342, 703, 869, 1080
FokI	GGATG	2 cut(s)	1100, 1143
FriOI	GRGCYC	2 cut(s)	20, 295
Fsp4HI	GCNGC	5 cut(s)	339, 342, 703, 869, 1080
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	171, 1121
GluI	GCNGC	5 cut(s)	339, 342, 703, 869, 1080
GsuI	CTGGAG	2 cut(s)	171, 624
HaeIII	GGCC	3 cut(s)	5, 618, 717
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	172, 1122
Hin1II	CATG	3 cut(s)	758, 1079, 1171
Hin6I	GCGC	2 cut(s)	170, 1120
HinP1I	GCGC	2 cut(s)	170, 1120
HincII	GTYRAC	2 cut(s)	201, 271
HindII	GTYRAC	2 cut(s)	201, 271
HinfI	GANTC	5 cut(s)	158, 860, 938, 992, 1034
HpaI	GTTAAC	2 cut(s)	201, 271
HphI	GGTGA	5 cut(s)	414, 441, 965, 1115, 1153
Hpy166II	GTNNAC	4 cut(s)	201, 271, 666, 736
Hpy188III	TCNNGA	8 cut(s)	150, 162, 302, 473, 648, 755, 911, 1042
Hpy8I	GTNNAC	4 cut(s)	201, 271, 666, 736
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	138, 202, 220, 490, 1138
HpyCH4III	ACNGT	4 cut(s)	387, 420, 486, 829
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 806
HpyF3I	CTNAG	8 cut(s)	195, 204, 360, 519, 675, 810, 1021, 1062
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	3 cut(s)	758, 1079, 1171
HspAI	GCGC	2 cut(s)	170, 1120
Ksp22I	TGATCA	1 cut(s)	963
KspAI	GTTAAC	2 cut(s)	201, 271
Kzo9I	GATC	4 cut(s)	211, 250, 757, 963
LmnI	GCTCC	6 cut(s)	23, 152, 290, 304, 460, 973
Lsp1109I	GCAGC	5 cut(s)	350, 353, 689, 855, 1091
LweI	GCATC	2 cut(s)	13, 809
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	8 cut(s)	95, 138, 420, 433, 596, 773, 953, 1016
MalI	GATC	4 cut(s)	213, 252, 759, 965
MbiI	CCGCTC	2 cut(s)	155, 455
MboI	GATC	4 cut(s)	211, 250, 757, 963
MhlI	GDGCHC	4 cut(s)	12, 20, 295, 668
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	7 cut(s)	62, 123, 296, 465, 534, 729, 906
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	167, 932
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	9 cut(s)	37, 204, 514, 517, 579, 648, 762, 774, 964
Mox20I	TGGCCA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	3 cut(s)	200, 270, 549
MslI	CAYNNNNRTG	2 cut(s)	753, 981
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	1082
MspR9I	CCNGG	4 cut(s)	326, 642, 1050, 1162
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	4 cut(s)	326, 642, 1050, 1162
MvnI	CGCG	3 cut(s)	170, 172, 649
MwoI	GCNNNNNNNGC	2 cut(s)	227, 806
NdeII	GATC	4 cut(s)	211, 250, 757, 963
NlaIII	CATG	3 cut(s)	758, 1079, 1171
NlaIV	GGNNCC	2 cut(s)	192, 306
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	95, 420, 953
NruI	TCGCGA	1 cut(s)	649
NspI	RCATGY	2 cut(s)	1079, 1171
NspV	TTCGAA	2 cut(s)	66, 881
PaeI	GCATGC	2 cut(s)	1079, 1171
PagI	TCATGA	1 cut(s)	754
PctI	GAATGC	1 cut(s)	704
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	860, 992, 1034
PkrI	GCNGC	5 cut(s)	340, 343, 704, 870, 1081
PleI	GAGTC	2 cut(s)	166, 932
PpsI	GAGTC	2 cut(s)	166, 932
Psp124BI	GAGCTC	2 cut(s)	20, 295
Psp6I	CCWGG	4 cut(s)	324, 640, 1048, 1160
PspGI	CCWGG	4 cut(s)	324, 640, 1048, 1160
PspN4I	GGNNCC	2 cut(s)	192, 306
RruI	TCGCGA	1 cut(s)	649
RsaI	GTAC	2 cut(s)	394, 514
RsaNI	GTAC	2 cut(s)	393, 513
RseI	CAYNNNNRTG	2 cut(s)	753, 981
SacI	GAGCTC	2 cut(s)	20, 295
SaqAI	TTAA	3 cut(s)	200, 270, 549
SatI	GCNGC	5 cut(s)	339, 342, 703, 869, 1080
Sau3AI	GATC	4 cut(s)	211, 250, 757, 963
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	2 cut(s)	167, 932
ScrFI	CCNGG	4 cut(s)	326, 642, 1050, 1162
SduI	GDGCHC	4 cut(s)	12, 20, 295, 668
SfaNI	GCATC	2 cut(s)	13, 809
SfuI	TTCGAA	2 cut(s)	66, 881
SmiMI	CAYNNNNRTG	2 cut(s)	753, 981
SphI	GCATGC	2 cut(s)	1079, 1171
Sse9I	AATT	7 cut(s)	62, 123, 296, 465, 534, 729, 906
SsiI	CCGC	6 cut(s)	120, 155, 188, 230, 453, 1082
SspI	AATATT	2 cut(s)	709, 1028
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	2 cut(s)	20, 295
StyD4I	CCNGG	4 cut(s)	324, 640, 1048, 1160
TaaI	ACNGT	4 cut(s)	387, 420, 486, 829
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	3 cut(s)	66, 161, 881
TasI	AATT	7 cut(s)	62, 123, 296, 465, 534, 729, 906
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	3 cut(s)	860, 992, 1034
Tru1I	TTAA	3 cut(s)	200, 270, 549
Tru9I	TTAA	3 cut(s)	200, 270, 549
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	3 cut(s)	95, 420, 953
TseI	GCWGC	5 cut(s)	338, 341, 702, 868, 1079
Tsp45I	GTSAC	3 cut(s)	95, 420, 953
TspDTI	ATGAA	4 cut(s)	72, 99, 105, 999
TspRI	CASTG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	664
XapI	RAATTY	3 cut(s)	62, 123, 534
XceI	RCATGY	2 cut(s)	1079, 1171
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.