RLG00000015712
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
902075 .. 905742
3668 bp
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UTR
Exon/CDS
Intron
RLM00000015712

Sequence Viewer

Length: 1590 bp
ATGGCCGAGCACCAGAGCTCCGATGCTCTGAAGAAAAATCCAGAGGAAGATGATGATGAAGAATACGAAGAAGTTGAAGATGAAAGTGACAAAGAAGAAGAAAACCAAAGCGGAATTCCTTCTGTGGAGTTACAAAGCTCTGGAGCGGAGTCGAGAGACGCGCGATTAGAAACCCTAGCGGGGCCTCAGTTAACTGAGAAGGATCAGTGTGCAGGTTTTGGGGTTAACTCTGCCACGAATGATGGAGCTCAATTTCAGGAGCCAATTGGGATAAGCCACCAGGAAGTTCTGGCAGCAGCACCGAACCAGCCTGCTCAGGGTCAGATACAAAATCTGCAACAGTTGAGTTCTTATCCAACTTCTTTGTCAGAACTGTCACCAACTTCTGTTACTCAATCCATTTCACCCGCGCCAAGCCCAATTCTTCCAGAACAAAGACCGCCATTGCAGAAGGTCAATGGTTTATGTACGCCTGAGGAGGACAAACAAATTTCTTCTGACTTTAAGTCTATATCGTCTGTTCCTCTTGTAAAAACATCTGCCTCAGATGGTTACAACTGGCGAAAATATGGCCAGAAGCAAGTGAAGTGTCCTCCAGGTTCGCGAAGTTATTATAGGTGCACATTTTCTGAGTGTTCTGTCAAAAAGATTGAATGCTGCGATATTTCAGGCCATATAACTGAAATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAGGAGTAACTGCACAAGGGAAATCAAGGTTGCATCTTCTGCTGAGTGCGTGGGCAATAGTGTTATAGAATATCCCTGCGAAATACTGAATGATTCAGAGCTGCCTACGACTTCGAAAGAACCTATACAAGAAAACCCAATTCCTGAAAGAAAACGACAGAACTCAAATAACTCTGATGGTAATGGTGATGTTATGATCAAGGAGGAGCATATCAATGAACCAGAATCCAAAAGAAGATTGAAGAAAAGTAACTCAGAATATTCAGATTCTCTCTTGAAACCTGGCAAGAAACCTAAGTTTGTAGTGCATGCAGCGGGGGATGTGGGAATATCAGGTGATGGATATAGGTGGCGCAAGTATGGACAGAAGATGGTGAAGGGAAACCCCCATCCCAGGAACTACTATAGATGCACTTCAGCTGGATGCCCTGTCCGGAAGCACATTGAAACAGCCGTAGATAACACAAGTGCCGTCATAATAACATACAAGGGTATACATGACCATGACATGCCTGTTCCAAAGAAGCGGCATGGCCCTCCGAGTGCTCCTCTTGTTGCCGCGGCTGCTCCTGCTTCCATGAACAATTTGCAGATTGTGAAAACTGATACTGAAGGACACCAATCTTCGACCCAGTGGTCAGTGGACAAGGGAGCTCACCAATCTTCGACGCAGCGGTCAGTGGACAAGGGAGCTCACCAATCTTCGACGCAGCGGTCAGTGGACAAGGGAGCACACCAATCTTCAACCCAGTGGTCAGTAGACAAGGGAGGAGAATTGACTGGTGAGACCTTAGAACTTGGAGGTGAAAAGGCAATGGAATCAGCTCGAACTCTTCTGAGCATTGGATTTGAAATCAAGCCCTGTTGA

Protein Analysis

530

Amino Acids

57.9

Weight (kDa)

5.73

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 183 - 238 6.4e-18 WRKY DNA -binding domain
WRKY PF03106 354 - 410 1.9e-24 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 1357, 1396, 1435
Acc36I ACCTGC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 1216, 1482
AccII CGCG 5 cut(s) 161, 163, 410, 604, 1283
AccIII TCCGGA 1 cut(s) 1155
AclWI GGATC 2 cut(s) 210, 707
AcoI YGGCCR 2 cut(s) 3, 571
AcsI RAATTY 2 cut(s) 114, 489
AcuI CTGAAG 3 cut(s) 50, 1122, 1353
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 180, 317, 723, 1116
AgsI TTSAA 7 cut(s) 77, 653, 964, 1000, 1169, 1467, 1574
AhdI GACNNNNNGTC 1 cut(s) 505
AjnI CCWGG 4 cut(s) 279, 595, 1003, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 8 cut(s) 18, 138, 248, 823, 1142, 1376, 1415, 1547
AluI AGCT 8 cut(s) 18, 138, 248, 823, 1142, 1376, 1415, 1547
Alw21I GWGCWC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
Alw26I GTCTC 2 cut(s) 150, 1502
Alw44I GTGCAC 1 cut(s) 619
AlwI GGATC 2 cut(s) 210, 707
Aor13HI TCCGGA 1 cut(s) 1155
AoxI GGCC 5 cut(s) 3, 182, 571, 670, 1255
ApaLI GTGCAC 1 cut(s) 619
ApeKI GCWGC 8 cut(s) 293, 296, 657, 823, 1034, 1286, 1393, 1432
ApoI RAATTY 2 cut(s) 114, 489
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 3 cut(s) 163, 412, 1077
AspS9I GGNCC 2 cut(s) 182, 1256
AsuHPI GGTGA 9 cut(s) 369, 396, 920, 1070, 1108, 1370, 1409, 1517, 1538
AsuII TTCGAA 1 cut(s) 836
AxyI CCTNAGG 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 573
BanII GRGCYC 4 cut(s) 20, 250, 1378, 1417
Bbv12I GWGCWC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
BbvI GCAGC 8 cut(s) 305, 308, 644, 810, 1046, 1273, 1405, 1444
BccI CCATC 6 cut(s) 236, 542, 893, 1055, 1087, 1119
BceAI ACGGC 2 cut(s) 1160, 1178
BciT130I CCWGG 4 cut(s) 281, 597, 1005, 1117
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 2 cut(s) 150, 1502
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 1126
BfuAI ACCTGC 1 cut(s) 203
Bme1390I CCNGG 4 cut(s) 281, 597, 1005, 1117
BmeRI GACNNNNNGTC 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 182, 1256
BmiI GGNNCC 2 cut(s) 183, 261
BmrFI CCNGG 4 cut(s) 281, 597, 1005, 1117
BmrI ACTGGG 2 cut(s) 1348, 1465
BmsI GCATC 4 cut(s) 13, 764, 1121, 1136
BmuI ACTGGG 2 cut(s) 1348, 1465
BplI GAGNNNNNCTC 2 cut(s) 1255, 1287
BpmI CTGGAG 2 cut(s) 162, 579
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 1502
BsaJI CCNNGG 3 cut(s) 719, 1115, 1281
BsaWI WCCGGW 1 cut(s) 1155
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 317, 723, 1116
Bse1I ACTGG 4 cut(s) 563, 1354, 1471, 1507
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 2 cut(s) 443, 1542
BseAI TCCGGA 1 cut(s) 1155
BseBI CCWGG 4 cut(s) 281, 597, 1005, 1117
BseDI CCNNGG 3 cut(s) 719, 1115, 1281
BseGI GGATG 3 cut(s) 1048, 1111, 1151
BseLI CCNNNNNNNGG 4 cut(s) 180, 317, 723, 1116
BseMI GCAATG 2 cut(s) 443, 1542
BseMII CTCAG 9 cut(s) 186, 200, 329, 465, 558, 621, 756, 990, 1550
BseNI ACTGG 4 cut(s) 563, 1354, 1471, 1507
BseRI GAGGAG 5 cut(s) 491, 739, 941, 1260, 1506
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 8 cut(s) 305, 308, 644, 810, 1046, 1273, 1405, 1444
BsgI GTGCAG 2 cut(s) 231, 718
Bsh1236I CGCG 5 cut(s) 161, 163, 410, 604, 1283
BshFI GGCC 5 cut(s) 5, 184, 573, 672, 1257
BsiHKAI GWGCWC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
BsiSI CCGG 1 cut(s) 1156
BslI CCNNNNNNNGG 4 cut(s) 180, 317, 723, 1116
BsmAI GTCTC 2 cut(s) 150, 1502
BsmBI CGTCTC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 5 cut(s) 5, 184, 573, 672, 1257
Bso31I GGTCTC 1 cut(s) 1502
Bsp119I TTCGAA 1 cut(s) 836
Bsp1286I GDGCHC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
Bsp13I TCCGGA 1 cut(s) 1155
Bsp143I GATC 3 cut(s) 202, 712, 918
Bsp68I TCGCGA 1 cut(s) 604
BspANI GGCC 5 cut(s) 5, 184, 573, 672, 1257
BspCNI CTCAG 9 cut(s) 187, 199, 328, 466, 557, 622, 757, 989, 1551
BspEI TCCGGA 1 cut(s) 1155
BspFNI CGCG 5 cut(s) 161, 163, 410, 604, 1283
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 183, 261
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 210, 707
BspT104I TTCGAA 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 1502
BsrBI CCGCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 443, 1542
BsrI ACTGG 4 cut(s) 563, 1354, 1471, 1507
BssECI CCNNGG 3 cut(s) 719, 1115, 1281
BssMI GATC 3 cut(s) 202, 712, 918
BssNAI GTATAC 1 cut(s) 1217
Bst1107I GTATAC 1 cut(s) 1217
Bst2UI CCWGG 4 cut(s) 281, 597, 1005, 1117
Bst4CI ACNGT 2 cut(s) 342, 375
Bst6I CTCTTC 1 cut(s) 1560
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 2 cut(s) 312, 1032
BstDSI CCRYGG 1 cut(s) 1281
BstF5I GGATG 3 cut(s) 1048, 1111, 1151
BstFNI CGCG 5 cut(s) 161, 163, 410, 604, 1283
BstHHI GCGC 3 cut(s) 163, 412, 1077
BstKTI GATC 3 cut(s) 205, 715, 921
BstMAI GTCTC 2 cut(s) 150, 1502
BstMBI GATC 3 cut(s) 202, 712, 918
BstMWI GCNNNNNNNGC 3 cut(s) 761, 1286, 1292
BstNI CCWGG 4 cut(s) 281, 597, 1005, 1117
BstNSI RCATGY 2 cut(s) 1034, 1234
BstSCI CCNGG 4 cut(s) 279, 595, 1003, 1115
BstSFI CTRYAG 1 cut(s) 1126
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 5 cut(s) 161, 163, 410, 604, 1283
BstV1I GCAGC 8 cut(s) 305, 308, 644, 810, 1046, 1273, 1405, 1444
BstZ17I GTATAC 1 cut(s) 1217
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 5 cut(s) 5, 184, 573, 672, 1257
BtgI CCRYGG 1 cut(s) 1281
BtsCI GGATG 3 cut(s) 1048, 1111, 1151
BtsIMutI CAGTG 6 cut(s) 212, 1361, 1368, 1407, 1446, 1478
BtuMI TCGCGA 1 cut(s) 604
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 312, 1032
CciI TCATGA 1 cut(s) 709
CfoI GCGC 3 cut(s) 163, 412, 1077
Cfr13I GGNCC 2 cut(s) 182, 1256
Cfr42I CCGCGG 1 cut(s) 1284
CseI GACGC 3 cut(s) 167, 1399, 1438
Csp6I GTAC 1 cut(s) 468
CviAII CATG 7 cut(s) 710, 1031, 1220, 1226, 1231, 1253, 1300
CviQI GTAC 1 cut(s) 468
DpnI GATC 3 cut(s) 204, 714, 920
DpnII GATC 3 cut(s) 202, 712, 918
DrdI GACNNNNNNGTC 3 cut(s) 1357, 1396, 1435
DriI GACNNNNNGTC 1 cut(s) 505
DseDI GACNNNNNNGTC 3 cut(s) 1357, 1396, 1435
EaeI YGGCCR 2 cut(s) 3, 571
Eam1104I CTCTTC 1 cut(s) 1560
Eam1105I GACNNNNNGTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 1560
Ecl136II GAGCTC 4 cut(s) 18, 248, 1376, 1415
Eco24I GRGCYC 4 cut(s) 20, 250, 1378, 1417
Eco31I GGTCTC 1 cut(s) 1502
Eco53kI GAGCTC 4 cut(s) 18, 248, 1376, 1415
Eco57I CTGAAG 3 cut(s) 50, 1122, 1353
Eco81I CCTNAGG 1 cut(s) 474
EcoICRI GAGCTC 4 cut(s) 18, 248, 1376, 1415
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 114
EcoRII CCWGG 4 cut(s) 279, 595, 1003, 1115
EcoT38I GRGCYC 4 cut(s) 20, 250, 1378, 1417
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 7 cut(s) 713, 1034, 1223, 1229, 1234, 1256, 1303
FatI CATG 7 cut(s) 709, 1030, 1219, 1225, 1230, 1252, 1299
FauI CCCGC 3 cut(s) 172, 415, 1030
FbaI TGATCA 1 cut(s) 918
FblI GTMKAC 2 cut(s) 1216, 1482
FokI GGATG 3 cut(s) 1055, 1098, 1158
FriOI GRGCYC 4 cut(s) 20, 250, 1378, 1417
FspBI CTAG 1 cut(s) 176
GlaI GCGC 3 cut(s) 162, 411, 1076
GsuI CTGGAG 2 cut(s) 162, 579
HaeIII GGCC 5 cut(s) 5, 184, 573, 672, 1257
HapII CCGG 1 cut(s) 1156
HgaI GACGC 3 cut(s) 167, 1399, 1438
HhaI GCGC 3 cut(s) 163, 412, 1077
Hin1II CATG 7 cut(s) 713, 1034, 1223, 1229, 1234, 1256, 1303
Hin6I GCGC 3 cut(s) 161, 410, 1075
HinP1I GCGC 3 cut(s) 161, 410, 1075
HincII GTYRAC 2 cut(s) 192, 226
HindII GTYRAC 2 cut(s) 192, 226
HinfI GANTC 5 cut(s) 149, 815, 947, 989, 1541
HpaI GTTAAC 2 cut(s) 192, 226
HpaII CCGG 1 cut(s) 1156
HphI GGTGA 9 cut(s) 369, 396, 920, 1070, 1108, 1370, 1409, 1517, 1538
Hpy166II GTNNAC 9 cut(s) 192, 226, 621, 691, 1217, 1366, 1405, 1444, 1483
Hpy8I GTNNAC 9 cut(s) 192, 226, 621, 691, 1217, 1366, 1405, 1444, 1483
Hpy99I CGWCG 2 cut(s) 1393, 1432
HpyAV CCTTC 5 cut(s) 129, 193, 445, 1093, 1328
HpyCH4III ACNGT 2 cut(s) 342, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 761, 1286, 1292
Hsp92II CATG 7 cut(s) 713, 1034, 1223, 1229, 1234, 1256, 1303
HspAI GCGC 3 cut(s) 161, 410, 1075
Kpn2I TCCGGA 1 cut(s) 1155
Ksp22I TGATCA 1 cut(s) 918
KspAI GTTAAC 2 cut(s) 192, 226
KspI CCGCGG 1 cut(s) 1284
Kzo9I GATC 3 cut(s) 202, 712, 918
Lsp1109I GCAGC 8 cut(s) 305, 308, 644, 810, 1046, 1273, 1405, 1444
LweI GCATC 4 cut(s) 13, 764, 1121, 1136
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 7 cut(s) 86, 129, 375, 388, 551, 728, 971
MalI GATC 3 cut(s) 204, 714, 920
MbiI CCGCTC 1 cut(s) 146
MboI GATC 3 cut(s) 202, 712, 918
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 9 cut(s) 114, 251, 264, 420, 489, 684, 861, 1306, 1496
MluNI TGGCCA 1 cut(s) 573
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 380
Mox20I TGGCCA 1 cut(s) 573
MroI TCCGGA 1 cut(s) 1155
MroXI GAANNNNTTC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 573
MseI TTAA 3 cut(s) 191, 225, 504
MslI CAYNNNNRTG 3 cut(s) 708, 936, 1224
Msp20I TGGCCA 1 cut(s) 573
MspA1I CMGCKG 5 cut(s) 1037, 1142, 1283, 1396, 1435
MspI CCGG 1 cut(s) 1156
MspR9I CCNGG 4 cut(s) 281, 597, 1005, 1117
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 4 cut(s) 281, 597, 1005, 1117
MvnI CGCG 5 cut(s) 161, 163, 410, 604, 1283
MwoI GCNNNNNNNGC 3 cut(s) 761, 1286, 1292
NdeII GATC 3 cut(s) 202, 712, 918
NlaIII CATG 7 cut(s) 713, 1034, 1223, 1229, 1234, 1256, 1303
NlaIV GGNNCC 2 cut(s) 183, 261
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 86, 375
NruI TCGCGA 1 cut(s) 604
NspI RCATGY 2 cut(s) 1034, 1234
NspV TTCGAA 1 cut(s) 836
PaeI GCATGC 1 cut(s) 1034
PagI TCATGA 1 cut(s) 709
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 815, 947, 989, 1541
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 4 cut(s) 20, 250, 1378, 1417
Psp6I CCWGG 4 cut(s) 279, 595, 1003, 1115
PspGI CCWGG 4 cut(s) 279, 595, 1003, 1115
PspN4I GGNNCC 2 cut(s) 183, 261
PspPI GGNCC 2 cut(s) 182, 1256
PvuII CAGCTG 1 cut(s) 1142
RruI TCGCGA 1 cut(s) 604
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 3 cut(s) 708, 936, 1224
SacI GAGCTC 4 cut(s) 20, 250, 1378, 1417
SacII CCGCGG 1 cut(s) 1284
SaqAI TTAA 3 cut(s) 191, 225, 504
Sau3AI GATC 3 cut(s) 202, 712, 918
Sau96I GGNCC 2 cut(s) 182, 1256
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 4 cut(s) 281, 597, 1005, 1117
SduI GDGCHC 8 cut(s) 12, 20, 250, 623, 1270, 1378, 1417, 1456
SfaNI GCATC 4 cut(s) 13, 764, 1121, 1136
SfcI CTRYAG 1 cut(s) 1126
Sfr303I CCGCGG 1 cut(s) 1284
SfuI TTCGAA 1 cut(s) 836
SgrBI CCGCGG 1 cut(s) 1284
SmiMI CAYNNNNRTG 3 cut(s) 708, 936, 1224
SphI GCATGC 1 cut(s) 1034
Sse9I AATT 9 cut(s) 114, 251, 264, 420, 489, 684, 861, 1306, 1496
SspI AATATT 1 cut(s) 983
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 4 cut(s) 20, 250, 1378, 1417
StyD4I CCNGG 4 cut(s) 279, 595, 1003, 1115
TaaI ACNGT 2 cut(s) 342, 375
TaqI TCGA 6 cut(s) 152, 836, 1349, 1388, 1427, 1549
TasI AATT 9 cut(s) 114, 251, 264, 420, 489, 684, 861, 1306, 1496
TauI GCSGC 3 cut(s) 1252, 1283, 1286
TfiI GAWTC 4 cut(s) 815, 947, 989, 1541
Tru1I TTAA 3 cut(s) 191, 225, 504
Tru9I TTAA 3 cut(s) 191, 225, 504
TscAI CASTG 6 cut(s) 212, 1361, 1368, 1407, 1446, 1478
TseFI GTSAC 2 cut(s) 86, 375
TseI GCWGC 8 cut(s) 293, 296, 657, 823, 1034, 1286, 1393, 1432
Tsp45I GTSAC 2 cut(s) 86, 375
TspDTI ATGAA 4 cut(s) 72, 96, 954, 1316
TspRI CASTG 6 cut(s) 212, 1361, 1368, 1407, 1446, 1478
VneI GTGCAC 1 cut(s) 619
XapI RAATTY 2 cut(s) 114, 489
XceI RCATGY 2 cut(s) 1034, 1234
XmiI GTMKAC 2 cut(s) 1216, 1482
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.