Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Reverse (-)

921714 .. 925879

Gene Structure 4166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCCGAGCACCAGAGCTCCGCTGCTCTGAAGAAAAACCGAGAGGAAGAAGATGATGAAGAATTCGAAGAAGAAGAAGATGAAGATGAAAGTGACAAAGAAGAAGAAAACCAAAGCGGAATTCCTTCTGTGGAGTTACAAAGCTCTGGAGCGGAGTCGAGAGACGCGCGATTAGAAACCCTAGCGGTGCCTCAGTTAACTGAGAAGGACCAGTGTGCAGGTTTTGGGGTTAACTCTGCGACGAATGATGGAGCTCAATTTCAGGAGCCAATTGGGATAAGCAACCAGGAAGTTCTGGCAGCAGCACCGAACCAGCCTGCTCAGGGTCAGATACAAAATCTGCAACAGTTGAGTTCTTATCCAACTTCTTTGTCAGAACTGTCACCAACTTCTGTTACTCAATCCATTTCACCCGCTCCAAGCCCAATTCTTCCAGAACAAAGACTGTCATTGCAGAAGGTCAATGGTTTATGTACGCCTGAGGAGGACAAACAAATTTCTTCTGACTTTAAGTCTATATCGCCTGTTCCTCTTGTAAAAATATCTGCTTCAGATGGTTACAACTGGCGAAAATATGGCCAGAAGCAAGTGAAGTGTCCTCCAGGTTCGCGAAGTTATTACAGGTGCACATTTTCTGAGTGTTCTGTCAAAAAGATTGAATGCTGCGATATTTCAGGCCATATAACCGAAATTGTTTACAAAAGCCAACACACTCATGATCCCCCTCGGAGGAGTAACTGCACAAGGGAAATCAAGGTTGCATCTTCTGCTGAGTGCGTGGGCAATAGTGTTATAGAATATCCCTGCGAAATACTGAATGATTCAGACCTGCCTACGACTTCGAAAGAACCTATACAAGAAAACCCAATTCCTGAAAGAAAACGACAGAACTCAAATGACTCTGATGGTAATGGTGATGTTATGATCAAGGAGGAGCATATCAATGAACCAGAATCCAAAAGAAGATTGAAGAAAAGTAACTCAGAATATTCAGATTCTCTCTTGAAACCTGGCAAGAAACCTAAGTTTGTAGTGCATGCAGCGGGGGATGTGGGAATATCAGGTGATGGATATAGGTGGCGCAAGTATGGACAGAAGATGGTGAAGGGAAACCCCCATCCCAGGTGCATGCCAGTTCTATCATCTGTTTTCTTTTGTTCTTTTTGTTTGACATATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

393

Amino Acids

43.6

Weight (kDa)

5.06

Isoelectric Point (pI)

70.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	185 - 240	4.2e-18	WRKY DNA -binding domain
WRKY	PF03106	356 - 376	4.5e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	209, 837
AccB1I	GGYRCC	1 cut(s)	187
AccBSI	CCGCTC	2 cut(s)	152, 416
AccII	CGCG	3 cut(s)	167, 169, 610
AciI	CCGC	6 cut(s)	21, 117, 152, 185, 414, 1043
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	2 cut(s)	3, 577
AcsI	RAATTY	3 cut(s)	62, 120, 495
AcuI	CTGAAG	2 cut(s)	50, 534
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	323, 729, 1122
AgsI	TTSAA	3 cut(s)	659, 970, 1006
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	4 cut(s)	285, 601, 1009, 1121
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	18, 144, 254
AluI	AGCT	3 cut(s)	18, 144, 254
Alw21I	GWGCWC	4 cut(s)	12, 20, 256, 629
Alw26I	GTCTC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	3 cut(s)	3, 577, 676
ApaLI	GTGCAC	1 cut(s)	625
ApeKI	GCWGC	5 cut(s)	23, 299, 302, 663, 1040
ApoI	RAATTY	3 cut(s)	62, 120, 495
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	169, 1083
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	5 cut(s)	375, 402, 926, 1076, 1114
AsuII	TTCGAA	2 cut(s)	66, 842
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	20, 256
Bbv12I	GWGCWC	4 cut(s)	12, 20, 256, 629
BbvI	GCAGC	5 cut(s)	10, 311, 314, 650, 1052
BccI	CCATC	6 cut(s)	242, 548, 899, 1061, 1093, 1125
BciT130I	CCWGG	4 cut(s)	287, 603, 1011, 1123
BclI	TGATCA	1 cut(s)	924
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	182
BfuAI	ACCTGC	2 cut(s)	209, 837
BisI	GCNGC	5 cut(s)	24, 300, 303, 664, 1041
BlsI	GCNGC	5 cut(s)	25, 301, 304, 665, 1042
Bme1390I	CCNGG	4 cut(s)	287, 603, 1011, 1123
Bme18I	GGWCC	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	189, 267
BmrFI	CCNGG	4 cut(s)	287, 603, 1011, 1123
BmsI	GCATC	1 cut(s)	770
BpmI	CTGGAG	2 cut(s)	168, 585
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	2 cut(s)	66, 842
BsaJI	CCNNGG	2 cut(s)	725, 1121
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 729, 1122
Bse1I	ACTGG	3 cut(s)	211, 569, 1133
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	4 cut(s)	287, 603, 1011, 1123
BseDI	CCNNGG	2 cut(s)	725, 1121
BseGI	GGATG	2 cut(s)	1054, 1117
BseLI	CCNNNNNNNGG	3 cut(s)	323, 729, 1122
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	7 cut(s)	192, 206, 335, 471, 627, 762, 996
BseNI	ACTGG	3 cut(s)	211, 569, 1133
BseRI	GAGGAG	3 cut(s)	497, 745, 947
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	5 cut(s)	10, 311, 314, 650, 1052
BsgI	GTGCAG	2 cut(s)	237, 724
Bsh1236I	CGCG	3 cut(s)	167, 169, 610
BshFI	GGCC	3 cut(s)	5, 579, 678
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	4 cut(s)	12, 20, 256, 629
BslI	CCNNNNNNNGG	3 cut(s)	323, 729, 1122
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	5, 579, 678
Bsp119I	TTCGAA	2 cut(s)	66, 842
Bsp1286I	GDGCHC	4 cut(s)	12, 20, 256, 629
Bsp143I	GATC	2 cut(s)	718, 924
Bsp68I	TCGCGA	1 cut(s)	610
BspACI	CCGC	6 cut(s)	21, 117, 152, 185, 414, 1043
BspANI	GGCC	3 cut(s)	5, 579, 678
BspCNI	CTCAG	7 cut(s)	193, 205, 334, 472, 628, 763, 995
BspFNI	CGCG	3 cut(s)	167, 169, 610
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	189, 267
BspMI	ACCTGC	2 cut(s)	209, 837
BspPI	GGATC	1 cut(s)	713
BspT104I	TTCGAA	2 cut(s)	66, 842
BspT107I	GGYRCC	1 cut(s)	187
BsrBI	CCGCTC	2 cut(s)	152, 416
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	211, 569, 1133
BssECI	CCNNGG	2 cut(s)	725, 1121
BssMI	GATC	2 cut(s)	718, 924
Bst2UI	CCWGG	4 cut(s)	287, 603, 1011, 1123
Bst4CI	ACNGT	3 cut(s)	348, 381, 447
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstBI	TTCGAA	2 cut(s)	66, 842
BstC8I	GCNNGC	3 cut(s)	318, 1038, 1130
BstDEI	CTNAG	8 cut(s)	192, 201, 321, 480, 636, 771, 982, 1023
BstF5I	GGATG	2 cut(s)	1054, 1117
BstFNI	CGCG	3 cut(s)	167, 169, 610
BstHHI	GCGC	2 cut(s)	169, 1083
BstKTI	GATC	2 cut(s)	721, 927
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	718, 924
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	4 cut(s)	287, 603, 1011, 1123
BstNSI	RCATGY	2 cut(s)	1040, 1132
BstSCI	CCNGG	4 cut(s)	285, 601, 1009, 1121
BstSLI	GKGCMC	1 cut(s)	629
BstUI	CGCG	3 cut(s)	167, 169, 610
BstV1I	GCAGC	5 cut(s)	10, 311, 314, 650, 1052
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	5, 579, 678
BtsCI	GGATG	2 cut(s)	1054, 1117
BtsIMutI	CAGTG	1 cut(s)	218
BtuMI	TCGCGA	1 cut(s)	610
BveI	ACCTGC	2 cut(s)	209, 837
Cac8I	GCNNGC	3 cut(s)	318, 1038, 1130
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	2 cut(s)	169, 1083
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	716, 1037, 1129
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	8 cut(s)	192, 201, 321, 480, 636, 771, 982, 1023
DpnI	GATC	2 cut(s)	720, 926
DpnII	GATC	2 cut(s)	718, 924
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	3, 577
Eam1105I	GACNNNNNGTC	1 cut(s)	511
Ecl136II	GAGCTC	2 cut(s)	18, 254
Eco24I	GRGCYC	2 cut(s)	20, 256
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	2 cut(s)	18, 254
Eco57I	CTGAAG	2 cut(s)	50, 534
Eco81I	CCTNAGG	1 cut(s)	480
EcoICRI	GAGCTC	2 cut(s)	18, 254
EcoRI	GAATTC	2 cut(s)	62, 120
EcoRII	CCWGG	4 cut(s)	285, 601, 1009, 1121
EcoT38I	GRGCYC	2 cut(s)	20, 256
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	719, 1040, 1132
FatI	CATG	3 cut(s)	715, 1036, 1128
FauI	CCCGC	2 cut(s)	421, 1036
FbaI	TGATCA	1 cut(s)	924
Fnu4HI	GCNGC	5 cut(s)	24, 300, 303, 664, 1041
FokI	GGATG	2 cut(s)	1061, 1104
FriOI	GRGCYC	2 cut(s)	20, 256
Fsp4HI	GCNGC	5 cut(s)	24, 300, 303, 664, 1041
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	168, 1082
GluI	GCNGC	5 cut(s)	24, 300, 303, 664, 1041
GsuI	CTGGAG	2 cut(s)	168, 585
HaeIII	GGCC	3 cut(s)	5, 579, 678
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	169, 1083
Hin1II	CATG	3 cut(s)	719, 1040, 1132
Hin6I	GCGC	2 cut(s)	167, 1081
HinP1I	GCGC	2 cut(s)	167, 1081
HincII	GTYRAC	2 cut(s)	198, 232
HindII	GTYRAC	2 cut(s)	198, 232
HinfI	GANTC	5 cut(s)	155, 821, 899, 953, 995
HpaI	GTTAAC	2 cut(s)	198, 232
HphI	GGTGA	5 cut(s)	375, 402, 926, 1076, 1114
Hpy166II	GTNNAC	4 cut(s)	198, 232, 627, 697
Hpy188III	TCNNGA	8 cut(s)	147, 159, 263, 434, 609, 716, 872, 1003
Hpy8I	GTNNAC	4 cut(s)	198, 232, 627, 697
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	135, 199, 451, 1099
HpyCH4III	ACNGT	3 cut(s)	348, 381, 447
HpyCH4V	TGCA	9 cut(s)	218, 343, 454, 627, 741, 761, 1036, 1040, 1128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	8 cut(s)	192, 201, 321, 480, 636, 771, 982, 1023
Hsp92II	CATG	3 cut(s)	719, 1040, 1132
HspAI	GCGC	2 cut(s)	167, 1081
Ksp22I	TGATCA	1 cut(s)	924
KspAI	GTTAAC	2 cut(s)	198, 232
Kzo9I	GATC	2 cut(s)	718, 924
LmnI	GCTCC	6 cut(s)	23, 149, 251, 265, 421, 934
Lsp1109I	GCAGC	5 cut(s)	10, 311, 314, 650, 1052
LweI	GCATC	1 cut(s)	770
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	7 cut(s)	92, 135, 381, 394, 557, 734, 977
MalI	GATC	2 cut(s)	720, 926
MbiI	CCGCTC	2 cut(s)	152, 416
MboI	GATC	2 cut(s)	718, 924
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	4 cut(s)	12, 20, 256, 629
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	8 cut(s)	62, 120, 257, 270, 426, 495, 690, 867
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	164, 893
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	9 cut(s)	37, 201, 475, 478, 540, 609, 723, 735, 925
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	3 cut(s)	197, 231, 510
MslI	CAYNNNNRTG	2 cut(s)	714, 942
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	23, 1043
MspR9I	CCNGG	4 cut(s)	287, 603, 1011, 1123
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	4 cut(s)	287, 603, 1011, 1123
MvnI	CGCG	3 cut(s)	167, 169, 610
MwoI	GCNNNNNNNGC	1 cut(s)	767
NdeII	GATC	2 cut(s)	718, 924
NlaIII	CATG	3 cut(s)	719, 1040, 1132
NlaIV	GGNNCC	2 cut(s)	189, 267
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	92, 381
NruI	TCGCGA	1 cut(s)	610
NspI	RCATGY	2 cut(s)	1040, 1132
NspV	TTCGAA	2 cut(s)	66, 842
PaeI	GCATGC	2 cut(s)	1040, 1132
PagI	TCATGA	1 cut(s)	715
PctI	GAATGC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	821, 953, 995
PkrI	GCNGC	5 cut(s)	25, 301, 304, 665, 1042
PleI	GAGTC	2 cut(s)	163, 893
PpsI	GAGTC	2 cut(s)	163, 893
Psp124BI	GAGCTC	2 cut(s)	20, 256
Psp6I	CCWGG	4 cut(s)	285, 601, 1009, 1121
PspGI	CCWGG	4 cut(s)	285, 601, 1009, 1121
PspN4I	GGNNCC	2 cut(s)	189, 267
PspPI	GGNCC	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	610
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	2 cut(s)	714, 942
SacI	GAGCTC	2 cut(s)	20, 256
SaqAI	TTAA	3 cut(s)	197, 231, 510
SatI	GCNGC	5 cut(s)	24, 300, 303, 664, 1041
Sau3AI	GATC	2 cut(s)	718, 924
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	164, 893
ScrFI	CCNGG	4 cut(s)	287, 603, 1011, 1123
SduI	GDGCHC	4 cut(s)	12, 20, 256, 629
SfaNI	GCATC	1 cut(s)	770
SfuI	TTCGAA	2 cut(s)	66, 842
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	714, 942
SphI	GCATGC	2 cut(s)	1040, 1132
Sse9I	AATT	8 cut(s)	62, 120, 257, 270, 426, 495, 690, 867
SsiI	CCGC	6 cut(s)	21, 117, 152, 185, 414, 1043
SspI	AATATT	1 cut(s)	989
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	2 cut(s)	20, 256
StyD4I	CCNGG	4 cut(s)	285, 601, 1009, 1121
TaaI	ACNGT	3 cut(s)	348, 381, 447
TaqI	TCGA	3 cut(s)	66, 158, 842
TasI	AATT	8 cut(s)	62, 120, 257, 270, 426, 495, 690, 867
TfiI	GAWTC	3 cut(s)	821, 953, 995
Tru1I	TTAA	3 cut(s)	197, 231, 510
Tru9I	TTAA	3 cut(s)	197, 231, 510
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	92, 381
TseI	GCWGC	5 cut(s)	23, 299, 302, 663, 1040
Tsp45I	GTSAC	2 cut(s)	92, 381
TspDTI	ATGAA	4 cut(s)	72, 96, 102, 960
TspRI	CASTG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	3 cut(s)	62, 120, 495
XceI	RCATGY	2 cut(s)	1040, 1132
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.