Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Forward (+)

55536910 .. 55540123

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0462500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACTTGGAGAGCATAGAGTGTGTTTCATCCTCAGATGGTCTTGATGAGGATGAGATCCATCAACACCTTCACAACCCACAACATCCTTCTCATCAACACCACCATGACTTTTCTTCTTCCAAGCCCAGAAATAATGTTACCAACAACGCCGGAATTCCGGGACCCACCGCCATTGCTCCGGCCACCAGCGTTCATGAGTTGCTGGAATGTCCGGTGTGTACGAATTCAATGTACCCACCGATTCATCAGTGTCACAATGGACACACACTGTGTTCTACCTGTAAAACAAGGGTCCACAATCGCTGCCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGTTTAGCGTTGGAGAAGGTGGCTGAGTCCCTGGAGTTACCCTGCAAGTATTACTCCTTGGGATGCCCGGAGATATTTCCTTACTACAGCAAACTAAAGCATGAATCAGTGTGCAATTTCAGACCTTATAATTGCCCATATGCTGGATCGGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTGCCCATCTTAGAGATGATCACAAAGTAGACATGCACACAGGATGCACGTTCAACCATCGCTATGTAAAGTCAAATCCCCGGGAAGTAGAGAATGCCACTTGGATGCTTACAGTCTTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTTGGCATGGCTCCTGTTTATATGGCTTTTCTACGTTTTATGGGTGATGAGAATGAGGCACGGAACTACAGCTACAGCCTTGAGGTTGGAGCAAATGGCAGGAAACTCATATGGGAGGGCACCCCAAGAAGTGTCCGTGATAGCCACCGGAAGGTAAGGGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCTTTATTTTTCTCTGGAGGAGATAGGAAGGAGCTTAAGCTGAGAGTTACCGGGAGGATATGGAAGGAACAGCAAAATCCAGATGCTGGAGTGTGCATACCAAACTTATGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

333

Amino Acids

37.85

Weight (kDa)

6.5

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	71 - 106	4.4e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	120 - 195	2e-30	Sina, zinc finger
Sina_TRAF	PF03145	215 - 312	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	809
AccB7I	CCANNNNNTGG	2 cut(s)	485, 971
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	52, 496
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	156, 226
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	223, 236
AfiI	CCNNNNNNNGG	5 cut(s)	318, 485, 523, 841, 971
AflII	CTTAAG	1 cut(s)	920
AgsI	TTSAA	4 cut(s)	231, 580, 680, 875
AjnI	CCWGG	2 cut(s)	372, 522
AluBI	AGCT	6 cut(s)	328, 691, 762, 919, 925, 999
AluI	AGCT	6 cut(s)	328, 691, 762, 919, 925, 999
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	2 cut(s)	52, 496
AlwNI	CAGNNNCTG	1 cut(s)	971
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	156, 226
AspS9I	GGNCC	2 cut(s)	164, 295
AsuC2I	CCSGG	5 cut(s)	162, 410, 607, 608, 937
AsuHPI	GGTGA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	2 cut(s)	164, 295
BaeGI	GKGCMC	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	32, 69, 540, 591
BciT130I	CCWGG	2 cut(s)	374, 524
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
BcoDI	GTCTC	1 cut(s)	869
BfmI	CTRYAG	3 cut(s)	427, 757, 763
BfrI	CTTAAG	1 cut(s)	920
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	7 cut(s)	162, 374, 410, 524, 607, 608, 937
Bme18I	GGWCC	2 cut(s)	164, 295
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	2 cut(s)	164, 295
BmiI	GGNNCC	5 cut(s)	165, 166, 296, 702, 811
BmrFI	CCNGG	7 cut(s)	162, 374, 410, 524, 607, 608, 937
BmsI	GCATC	4 cut(s)	395, 560, 621, 958
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	3 cut(s)	395, 921, 993
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	4 cut(s)	372, 399, 605, 606
BsaWI	WCCGGW	2 cut(s)	214, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	318, 485, 523, 841, 971
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	374, 524
BseDI	CCNNGG	4 cut(s)	372, 399, 605, 606
BseGI	GGATG	6 cut(s)	29, 58, 85, 410, 575, 636
BseLI	CCNNNNNNNGG	5 cut(s)	318, 485, 523, 841, 971
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	48, 357, 917
BseRI	GAGGAG	1 cut(s)	918
BseSI	GKGCMC	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	8 cut(s)	153, 161, 182, 215, 410, 607, 838, 936
BslFI	GGGAC	2 cut(s)	177, 355
BslI	CCNNNNNNNGG	5 cut(s)	318, 485, 523, 841, 971
BsmAI	GTCTC	1 cut(s)	869
BsmFI	GGGAC	2 cut(s)	177, 355
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	500, 812
Bsp143I	GATC	3 cut(s)	57, 488, 544
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	47, 358, 918
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	165, 166, 296, 702, 811
BspPI	GGATC	2 cut(s)	52, 496
BspT107I	GGYRCC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	920
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	4 cut(s)	372, 399, 605, 606
BssMI	GATC	3 cut(s)	57, 488, 544
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	374, 524
Bst4CI	ACNGT	3 cut(s)	273, 640, 863
BstAFI	CTTAAG	1 cut(s)	920
BstDEI	CTNAG	4 cut(s)	34, 366, 536, 926
BstF5I	GGATG	6 cut(s)	29, 58, 85, 410, 575, 636
BstKTI	GATC	3 cut(s)	60, 491, 547
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	3 cut(s)	57, 488, 544
BstNI	CCWGG	2 cut(s)	374, 524
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	7 cut(s)	160, 372, 408, 522, 605, 606, 935
BstSFI	CTRYAG	3 cut(s)	427, 757, 763
BstSLI	GKGCMC	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	6 cut(s)	29, 58, 85, 410, 575, 636
BtsIMutI	CAGTG	3 cut(s)	257, 269, 456
CaiI	CAGNNNCTG	1 cut(s)	971
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	164, 295
Cfr9I	CCCGGG	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	222, 235
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	7 cut(s)	107, 197, 443, 559, 697, 857, 883
CviQI	GTAC	2 cut(s)	222, 235
DdeI	CTNAG	4 cut(s)	34, 366, 536, 926
DpnI	GATC	3 cut(s)	59, 490, 546
DpnII	GATC	3 cut(s)	57, 488, 544
DraIII	CACNNNGTG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	164, 295
Eco88I	CYCGRG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	156, 226
EcoRII	CCWGG	2 cut(s)	372, 522
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
FaqI	GGGAC	2 cut(s)	177, 355
FatI	CATG	7 cut(s)	106, 196, 442, 558, 696, 856, 882
FauNDI	CATATG	2 cut(s)	481, 800
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	6 cut(s)	16, 65, 72, 417, 582, 643
Fsp4HI	GCNGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	3 cut(s)	395, 921, 993
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	8 cut(s)	153, 161, 182, 215, 410, 607, 838, 936
Hin1II	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
HinfI	GANTC	3 cut(s)	244, 368, 446
HpaII	CCGG	8 cut(s)	153, 161, 182, 215, 410, 607, 838, 936
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	3 cut(s)	222, 298, 556
Hpy188I	TCNGA	3 cut(s)	37, 464, 493
Hpy188III	TCNNGA	4 cut(s)	44, 197, 900, 965
Hpy8I	GTNNAC	3 cut(s)	222, 298, 556
HpyAV	CCTTC	8 cut(s)	80, 99, 352, 680, 694, 835, 907, 943
HpyCH4III	ACNGT	3 cut(s)	273, 640, 863
HpyCH4IV	ACGT	2 cut(s)	575, 724
HpyCH4V	TGCA	5 cut(s)	387, 456, 562, 573, 981
HpyF3I	CTNAG	4 cut(s)	34, 366, 536, 926
HpySE526I	ACGT	2 cut(s)	575, 724
Hsp92II	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
KflI	GGGWCCC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	57, 488, 544
LmnI	GCTCC	5 cut(s)	184, 325, 706, 779, 916
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	4 cut(s)	395, 560, 621, 958
MaeII	ACGT	2 cut(s)	575, 724
MaeIII	GTNAC	4 cut(s)	139, 254, 378, 931
MalI	GATC	3 cut(s)	59, 490, 546
MboI	GATC	3 cut(s)	57, 488, 544
MboII	GAAGA	3 cut(s)	108, 111, 634
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	500, 812
MluCI	AATT	4 cut(s)	156, 226, 457, 472
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	333, 757
MnlI	CCTC	7 cut(s)	43, 43, 739, 766, 799, 896, 933
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	3 cut(s)	105, 588, 629
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	8 cut(s)	153, 161, 182, 215, 410, 607, 838, 936
MspR9I	CCNGG	7 cut(s)	162, 374, 410, 524, 607, 608, 937
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	374, 524
NciI	CCSGG	5 cut(s)	162, 410, 607, 608, 937
NdeI	CATATG	2 cut(s)	481, 800
NdeII	GATC	3 cut(s)	57, 488, 544
NlaIII	CATG	7 cut(s)	110, 200, 446, 562, 700, 860, 886
NlaIV	GGNNCC	5 cut(s)	165, 166, 296, 702, 811
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	562
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	244, 446
PflMI	CCANNNNNTGG	2 cut(s)	485, 971
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	372, 522
PspGI	CCWGG	2 cut(s)	372, 522
PspN4I	GGNNCC	5 cut(s)	165, 166, 296, 702, 811
PspPI	GGNCC	2 cut(s)	164, 295
PspPPI	RGGWCCY	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	746, 778
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	223, 236
RsaNI	GTAC	2 cut(s)	222, 235
RseI	CAYNNNNRTG	3 cut(s)	105, 588, 629
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	3 cut(s)	57, 488, 544
Sau96I	GGNCC	2 cut(s)	164, 295
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	7 cut(s)	162, 374, 410, 524, 607, 608, 937
SduI	GDGCHC	2 cut(s)	500, 812
SfaNI	GCATC	4 cut(s)	395, 560, 621, 958
SfcI	CTRYAG	3 cut(s)	427, 757, 763
SinI	GGWCC	2 cut(s)	164, 295
SmaI	CCCGGG	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	105, 588, 629
SmlI	CTYRAG	2 cut(s)	770, 920
SmoI	CTYRAG	2 cut(s)	770, 920
Sse9I	AATT	4 cut(s)	156, 226, 457, 472
SsiI	CCGC	1 cut(s)	171
StyD4I	CCNGG	7 cut(s)	160, 372, 408, 522, 605, 606, 935
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	273, 640, 863
TaiI	ACGT	2 cut(s)	578, 727
TasI	AATT	4 cut(s)	156, 226, 457, 472
TfiI	GAWTC	2 cut(s)	244, 446
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	3 cut(s)	257, 276, 456
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	18, 185, 236, 459, 662
TspGWI	ACGGA	2 cut(s)	766, 815
TspMI	CCCGGG	1 cut(s)	606
TspRI	CASTG	3 cut(s)	257, 276, 456
Van91I	CCANNNNNTGG	2 cut(s)	485, 971
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	164, 295
XapI	RAATTY	2 cut(s)	156, 226
XceI	RCATGY	1 cut(s)	562
XmaI	CCCGGG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.