Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Reverse (-)

9271751 .. 9273430

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGGAGCGCCACGAGAGCTCCGATGCTCTCCCAACGGAGAAACTACACCCAAGGAAAGGAGAACAAGAAGAAGGCGGCGACGGAGACGAAGACGACGACGAAGAACGAAAGCAACGACTCGGTGAATTTCAACCCGGTGAGTTAAAGAGTTCTGTATCCGAGTTGAGGCAAACGCAATTAGAAACCCTAACGGCGCCTTCGACGCAGGAATTTTCAGAGAACGATCAGTTTGCAGGTTTGCAGCTTGAGTCCGTGTCACAGTCGATTGATGGAGCTGAATTGCAGGAGCAACTTGGGCTGAGCCACCAGGAAATTTTGGCAAGTGTAAGGAACCAAGATATTCAGATTCAGAAGCAAAGTCAGTCTCAGTTGACTGTTTATCCAACTCCGTTTTCAGAACTATCTCCAACTTCTGTCACTCAATCCATTTCATCTGCTCCAAGCCCAATTCTAATAGAACAAAGAGTTCCTCATGGAAAGACATCTGCTTCAGATGGTTACAACTGGCGGAAATATGGTCAGAAGCAAGTAAAGAGCCCTCTAGGTTCTCGAAGCTATTATAGGTGCACATATTCTGAGTGTTATGCCAAGAAAATAGAATGCTGTGATCACTCAGGCCATGTAACAGATATTGTTTACAAAAGCCAACATACTCATCGATCCCCCTCGGAAAAGTATCTGCATAAAGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

233

Amino Acids

26.07

Weight (kDa)

5.24

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	196
AciI	CCGC	3 cut(s)	5, 78, 511
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	3 cut(s)	128, 212, 315
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	59, 168
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	4 cut(s)	21, 247, 278, 558
AluI	AGCT	4 cut(s)	21, 247, 278, 558
Alw21I	GWGCWC	2 cut(s)	23, 572
Alw26I	GTCTC	2 cut(s)	81, 372
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	1 cut(s)	619
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	128, 212, 315
AspLEI	GCGC	2 cut(s)	12, 199
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	137, 152
BaeGI	GKGCMC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	23, 542
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	23, 572
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	266, 491
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	81, 372
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	2 cut(s)	13, 200
BfuAI	ACCTGC	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	79, 245
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	2 cut(s)	80, 246
Bme1390I	CCNGG	2 cut(s)	138, 311
BmiI	GGNNCC	2 cut(s)	198, 335
BmrFI	CCNGG	2 cut(s)	138, 311
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	53, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 168
Bse1I	ACTGG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	311
BseCI	ATCGAT	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	53, 669
BseLI	CCNNNNNNNGG	2 cut(s)	59, 168
BseMII	CTCAG	4 cut(s)	293, 383, 570, 630
BseNI	ACTGG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	621
BshNI	GGYRCC	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	23, 572
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	59, 168
BsmAI	GTCTC	2 cut(s)	81, 372
BsmBI	CGTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	23, 542, 572
Bsp143I	GATC	3 cut(s)	226, 610, 662
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	3 cut(s)	5, 78, 511
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	4 cut(s)	294, 382, 571, 629
BspDI	ATCGAT	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	198, 335
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	53, 669
BssMI	GATC	3 cut(s)	226, 610, 662
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	264, 379
BstACI	GRCGYC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	302, 369, 579, 616
BstH2I	RGCGCY	2 cut(s)	13, 200
BstHHI	GCGC	2 cut(s)	12, 199
BstKTI	GATC	3 cut(s)	229, 613, 665
BstMAI	GTCTC	2 cut(s)	81, 372
BstMBI	GATC	3 cut(s)	226, 610, 662
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 205, 298
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	136, 309
BstSLI	GKGCMC	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	621
BsuTUI	ATCGAT	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	227
CfoI	GCGC	2 cut(s)	12, 199
ClaI	ATCGAT	1 cut(s)	661
CseI	GACGC	1 cut(s)	214
CviAII	CATG	2 cut(s)	476, 623
DdeI	CTNAG	4 cut(s)	302, 369, 579, 616
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	3 cut(s)	228, 612, 664
DpnII	GATC	3 cut(s)	226, 610, 662
EciI	GGCGGA	2 cut(s)	20, 526
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	23, 542
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	2 cut(s)	23, 542
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	479, 626
FaiI	YATR	8 cut(s)	477, 519, 564, 574, 588, 624, 654, 687
FatI	CATG	2 cut(s)	475, 622
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	79, 245
FriOI	GRGCYC	2 cut(s)	23, 542
Fsp4HI	GCNGC	2 cut(s)	79, 245
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	11, 198
GluI	GCNGC	2 cut(s)	79, 245
HaeII	RGCGCY	2 cut(s)	13, 200
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	12, 199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	479, 626
Hin6I	GCGC	2 cut(s)	10, 197
HinP1I	GCGC	2 cut(s)	10, 197
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	120, 251, 349
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	137, 152
Hpy166II	GTNNAC	3 cut(s)	375, 570, 640
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	3 cut(s)	375, 570, 640
Hpy99I	CGWCG	4 cut(s)	86, 101, 104, 208
HpyAV	CCTTC	2 cut(s)	68, 210
HpyCH4III	ACNGT	2 cut(s)	264, 379
HpyCH4V	TGCA	5 cut(s)	236, 244, 286, 570, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 205, 298
HpyF3I	CTNAG	4 cut(s)	302, 369, 579, 616
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	479, 626
HspAI	GCGC	2 cut(s)	10, 197
KasI	GGCGCC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	226, 610, 662
LmnI	GCTCC	5 cut(s)	7, 26, 275, 289, 445
LpnPI	CCDG	8 cut(s)	151, 194, 222, 272, 296, 323, 493, 603
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	4 cut(s)	258, 418, 500, 625
MalI	GATC	3 cut(s)	228, 612, 664
MboI	GATC	3 cut(s)	226, 610, 662
MboII	GAAGA	3 cut(s)	83, 104, 116
MhlI	GDGCHC	3 cut(s)	23, 542, 572
MluCI	AATT	6 cut(s)	128, 179, 212, 281, 315, 450
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	114, 260
MmeI	TCCRAC	2 cut(s)	410, 434
MnlI	CCTC	4 cut(s)	162, 483, 552, 679
MseI	TTAA	1 cut(s)	146
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	138, 311
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	18, 205, 298
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	226, 610, 662
NlaIII	CATG	2 cut(s)	479, 626
NlaIV	GGNNCC	2 cut(s)	198, 335
NmuCI	GTSAC	2 cut(s)	258, 418
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 96, 115, 200
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	80, 246
PleI	GAGTC	2 cut(s)	114, 259
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	2 cut(s)	114, 259
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	198, 335
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	79, 245
Sau3AI	GATC	3 cut(s)	226, 610, 662
SchI	GAGTC	2 cut(s)	114, 260
ScrFI	CCNGG	2 cut(s)	138, 311
SduI	GDGCHC	3 cut(s)	23, 542, 572
SetI	ASST	7 cut(s)	23, 241, 249, 280, 550, 560, 569
SfaNI	GCATC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	6 cut(s)	128, 179, 212, 281, 315, 450
SsiI	CCGC	3 cut(s)	5, 78, 511
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	136, 309
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	264, 379
TaqI	TCGA	4 cut(s)	203, 266, 553, 661
TasI	AATT	6 cut(s)	128, 179, 212, 281, 315, 450
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseFI	GTSAC	2 cut(s)	258, 418
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	2 cut(s)	258, 418
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	4 cut(s)	53, 99, 244, 381
VneI	GTGCAC	1 cut(s)	568
XapI	RAATTY	3 cut(s)	128, 212, 315
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.