Rw2G001020
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
849621 .. 853277
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001020.1

Sequence Viewer

Length: 1461 bp
ATGGCCGAGCACCAGAGCTCCGATGCTCTGAAGAAAAACCGAGAGGAAGAAGAGGATGAAGAATTCGAAGAAGAAGAAGATGAAGATGAAAGTGACAAAGAAGAAGAAAACCAAAGCGGAATTCCTTCTGAGCCAATTGGGATAAGCCACCAGGAAGTTCTGGCAGCAGCACCGAACCAGCCTGCTCAGGGTCAGATACAAAATCTGCAACAGTTGAGTACTTATCCAACTTCTTTGTCAGAACTGTCACCAACTTCTGTTACTCAATCCATTTCACCCGCTCCAAGCCCAATTCTTCCAGAACAAAGACCGTCATTGCAGAAGGTCAATGGTTTATATACGCCTGAGGAGGACAAACAAATTTCTTCTGACTTTAAGTCTATATCGCCTGTTCCTCTTGTAAAAACATCTGCTTCAGATGGTTACAACTGGCGAAAATATGGCCAGAAGCAAGTGAAGTGTCCTCCAGGTTCGCGAAGTTATTACAGGTGCACATTTTCTGAGTGTTCTGTCAAAAAGATTGAATGCTGCGATATTTCAGGCCATATAACCGAAATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAGGAGTAACTGCACAAGGGAAATCAAGGTTGCATCGTCTGCTGAGTGCGTGGGCAATAGTGTTATAGAATATCCCTGCGAAATACTGAATGATTCAGAGCTGCCTACGACTTCGAAAGAACCTATACAAGAAAACCCAATTCCTGAAAGAAAACGACAGAACTCAAATGACTCTGATGGTAATGGTGATGTTATGATCAAGGAGGAGCATATCAATGAACCAGAATCCAAAAGAAGATTGAAGAAAAGTAACTCAGAATATTCAGATTCTCTCTTGAAACCTGGCAAGAAACCTAAGTTTGTAGTGCATGCAGCGGGGGATGTGGGAATATCAGGTGATGGATACAGGTGGCGCAAGTATGGACAGAAGATGGTGAAGGGAAACCCCCATCCCAGGAACTACTATAGATGCACTTCTGCTGGATGCCCTGTCCGGAAGCACATTGAAACAGCCGTAGATAACACAAGTGCCGTCATAATAACATACAAGGGGATACATGACCATGACATGCCTGTTCCAAAGAAGCGGCATGGCCCTCCGAGTGCTCCTCTTGTTGCCGCGGCTGCTCCTGCTTCCATGAACAATTTGCAGATTGTGAAAACTGATACTGAAGGACACCAATCTTCGACCCAGTGGTCAGTGGACAAGGGAGCTCACCAATCTTCGACCCAGCGGTTAGTGGACAAGGGAGCTCACCAATCTTCGACGCAGCGGTCAGTGGACAAGGGAGCACACCAATCTTCAACCCAGTGGTCAGTAGACAAGGGTGGAGAATTGACTGGTGAGACCTTAGAACTTGGAGGTGAAAAGGCAATGGAATCAGCTCGAACTCTTCTGAGCATTGGATTTGAAATCAAGCCCTGTTGA

Protein Analysis

486

Amino Acids

53.66

Weight (kDa)

5.8

Isoelectric Point (pI)

63.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 140 - 195 5.7e-18 WRKY DNA -binding domain
WRKY PF03106 311 - 367 1.7e-24 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1228, 1306
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 1353
AccII CGCG 2 cut(s) 475, 1154
AccIII TCCGGA 1 cut(s) 1026
AciI CCGC 8 cut(s) 117, 279, 908, 1120, 1152, 1154, 1267, 1306
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 2 cut(s) 3, 442
AcsI RAATTY 3 cut(s) 62, 120, 360
AcuI CTGAAG 3 cut(s) 50, 399, 1224
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 188, 594, 987
AgsI TTSAA 6 cut(s) 524, 835, 871, 1040, 1338, 1445
AhdI GACNNNNNGTC 1 cut(s) 376
AjnI CCWGG 4 cut(s) 150, 466, 874, 986
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 5 cut(s) 18, 694, 1247, 1286, 1418
AluI AGCT 5 cut(s) 18, 694, 1247, 1286, 1418
Alw21I GWGCWC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
Alw26I GTCTC 1 cut(s) 1373
Alw44I GTGCAC 1 cut(s) 490
AlwI GGATC 1 cut(s) 578
Aor13HI TCCGGA 1 cut(s) 1026
AoxI GGCC 4 cut(s) 3, 442, 541, 1126
ApaLI GTGCAC 1 cut(s) 490
ApeKI GCWGC 7 cut(s) 164, 167, 528, 694, 905, 1157, 1303
ApoI RAATTY 3 cut(s) 62, 120, 360
Asp700I GAANNNNTTC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 948
AspS9I GGNCC 1 cut(s) 1127
AsuHPI GGTGA 9 cut(s) 240, 267, 791, 941, 979, 1241, 1280, 1388, 1409
AsuII TTCGAA 2 cut(s) 66, 707
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 494
BalI TGGCCA 1 cut(s) 444
BanII GRGCYC 3 cut(s) 20, 1249, 1288
Bbv12I GWGCWC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
BbvI GCAGC 7 cut(s) 176, 179, 515, 681, 917, 1144, 1315
BccI CCATC 5 cut(s) 413, 764, 926, 958, 990
BceAI ACGGC 2 cut(s) 1031, 1049
BciT130I CCWGG 4 cut(s) 152, 468, 876, 988
BciVI GTATCC 2 cut(s) 929, 1080
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 1 cut(s) 1373
BfmI CTRYAG 1 cut(s) 997
BfuI GTATCC 2 cut(s) 929, 1080
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 4 cut(s) 152, 468, 876, 988
BmeRI GACNNNNNGTC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 1127
BmrFI CCNGG 4 cut(s) 152, 468, 876, 988
BmrI ACTGGG 2 cut(s) 1219, 1336
BmsI GCATC 4 cut(s) 13, 635, 992, 1007
BmuI ACTGGG 2 cut(s) 1219, 1336
BplI GAGNNNNNCTC 2 cut(s) 1126, 1158
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 2 cut(s) 66, 707
BsaI GGTCTC 1 cut(s) 1373
BsaJI CCNNGG 3 cut(s) 590, 986, 1152
BsaWI WCCGGW 1 cut(s) 1026
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 594, 987
Bse1I ACTGG 4 cut(s) 434, 1225, 1342, 1378
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 2 cut(s) 314, 1413
BseAI TCCGGA 1 cut(s) 1026
BseBI CCWGG 4 cut(s) 152, 468, 876, 988
BseDI CCNNGG 3 cut(s) 590, 986, 1152
BseGI GGATG 4 cut(s) 61, 919, 982, 1022
BseLI CCNNNNNNNGG 3 cut(s) 188, 594, 987
BseMI GCAATG 2 cut(s) 314, 1413
BseMII CTCAG 7 cut(s) 120, 200, 336, 492, 627, 861, 1421
BseNI ACTGG 4 cut(s) 434, 1225, 1342, 1378
BseRI GAGGAG 4 cut(s) 362, 610, 812, 1131
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 7 cut(s) 176, 179, 515, 681, 917, 1144, 1315
BseYI CCCAGC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 589
Bsh1236I CGCG 2 cut(s) 475, 1154
BshFI GGCC 4 cut(s) 5, 444, 543, 1128
BsiHKAI GWGCWC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
BsiSI CCGG 1 cut(s) 1027
BslI CCNNNNNNNGG 3 cut(s) 188, 594, 987
BsmAI GTCTC 1 cut(s) 1373
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 4 cut(s) 5, 444, 543, 1128
Bso31I GGTCTC 1 cut(s) 1373
Bsp119I TTCGAA 2 cut(s) 66, 707
Bsp1286I GDGCHC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
Bsp13I TCCGGA 1 cut(s) 1026
Bsp143I GATC 2 cut(s) 583, 789
Bsp68I TCGCGA 1 cut(s) 475
BspACI CCGC 8 cut(s) 117, 279, 908, 1120, 1152, 1154, 1267, 1306
BspANI GGCC 4 cut(s) 5, 444, 543, 1128
BspCNI CTCAG 7 cut(s) 121, 199, 337, 493, 628, 860, 1422
BspEI TCCGGA 1 cut(s) 1026
BspFNI CGCG 2 cut(s) 475, 1154
BspHI TCATGA 1 cut(s) 580
BspPI GGATC 1 cut(s) 578
BspT104I TTCGAA 2 cut(s) 66, 707
BspTNI GGTCTC 1 cut(s) 1373
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 314, 1413
BsrI ACTGG 4 cut(s) 434, 1225, 1342, 1378
BssECI CCNNGG 3 cut(s) 590, 986, 1152
BssMI GATC 2 cut(s) 583, 789
Bst2UI CCWGG 4 cut(s) 152, 468, 876, 988
Bst4CI ACNGT 3 cut(s) 213, 246, 312
Bst6I CTCTTC 2 cut(s) 45, 1431
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBI TTCGAA 2 cut(s) 66, 707
BstC8I GCNNGC 2 cut(s) 183, 903
BstDEI CTNAG 9 cut(s) 129, 186, 345, 501, 636, 847, 888, 1384, 1430
BstDSI CCRYGG 1 cut(s) 1152
BstF5I GGATG 4 cut(s) 61, 919, 982, 1022
BstFNI CGCG 2 cut(s) 475, 1154
BstHHI GCGC 1 cut(s) 948
BstKTI GATC 2 cut(s) 586, 792
BstMAI GTCTC 1 cut(s) 1373
BstMBI GATC 2 cut(s) 583, 789
BstMWI GCNNNNNNNGC 3 cut(s) 632, 1157, 1163
BstNI CCWGG 4 cut(s) 152, 468, 876, 988
BstNSI RCATGY 2 cut(s) 905, 1105
BstSCI CCNGG 4 cut(s) 150, 466, 874, 986
BstSFI CTRYAG 1 cut(s) 997
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 2 cut(s) 475, 1154
BstV1I GCAGC 7 cut(s) 176, 179, 515, 681, 917, 1144, 1315
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 2 cut(s) 929, 1080
BsuRI GGCC 4 cut(s) 5, 444, 543, 1128
BtgI CCRYGG 1 cut(s) 1152
BtsCI GGATG 4 cut(s) 61, 919, 982, 1022
BtsIMutI CAGTG 4 cut(s) 1232, 1239, 1317, 1349
BtuMI TCGCGA 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 183, 903
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 1127
Cfr42I CCGCGG 1 cut(s) 1155
CseI GACGC 1 cut(s) 1309
Csp6I GTAC 1 cut(s) 219
CviAII CATG 7 cut(s) 581, 902, 1091, 1097, 1102, 1124, 1171
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 9 cut(s) 129, 186, 345, 501, 636, 847, 888, 1384, 1430
DpnI GATC 2 cut(s) 585, 791
DpnII GATC 2 cut(s) 583, 789
DrdI GACNNNNNNGTC 2 cut(s) 1228, 1306
DriI GACNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 2 cut(s) 1228, 1306
EaeI YGGCCR 2 cut(s) 3, 442
Eam1104I CTCTTC 2 cut(s) 45, 1431
Eam1105I GACNNNNNGTC 1 cut(s) 376
EarI CTCTTC 2 cut(s) 45, 1431
Ecl136II GAGCTC 3 cut(s) 18, 1247, 1286
Eco24I GRGCYC 3 cut(s) 20, 1249, 1288
Eco31I GGTCTC 1 cut(s) 1373
Eco53kI GAGCTC 3 cut(s) 18, 1247, 1286
Eco57I CTGAAG 3 cut(s) 50, 399, 1224
Eco81I CCTNAGG 1 cut(s) 345
EcoICRI GAGCTC 3 cut(s) 18, 1247, 1286
EcoRI GAATTC 2 cut(s) 62, 120
EcoRII CCWGG 4 cut(s) 150, 466, 874, 986
EcoT38I GRGCYC 3 cut(s) 20, 1249, 1288
FaeI CATG 7 cut(s) 584, 905, 1094, 1100, 1105, 1127, 1174
FatI CATG 7 cut(s) 580, 901, 1090, 1096, 1101, 1123, 1170
FauI CCCGC 2 cut(s) 286, 901
FbaI TGATCA 1 cut(s) 789
FblI GTMKAC 1 cut(s) 1353
FokI GGATG 4 cut(s) 68, 926, 969, 1029
FriOI GRGCYC 3 cut(s) 20, 1249, 1288
GlaI GCGC 1 cut(s) 947
GsaI CCCAGC 1 cut(s) 1267
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 4 cut(s) 5, 444, 543, 1128
HapII CCGG 1 cut(s) 1027
HgaI GACGC 1 cut(s) 1309
HhaI GCGC 1 cut(s) 948
Hin1II CATG 7 cut(s) 584, 905, 1094, 1100, 1105, 1127, 1174
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HinfI GANTC 5 cut(s) 686, 764, 818, 860, 1412
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 9 cut(s) 240, 267, 791, 941, 979, 1241, 1280, 1388, 1409
Hpy166II GTNNAC 6 cut(s) 492, 562, 1237, 1276, 1315, 1354
Hpy188III TCNNGA 6 cut(s) 299, 474, 581, 737, 868, 1027
Hpy8I GTNNAC 6 cut(s) 492, 562, 1237, 1276, 1315, 1354
Hpy99I CGWCG 1 cut(s) 1303
HpyAV CCTTC 4 cut(s) 135, 316, 964, 1199
HpyCH4III ACNGT 3 cut(s) 213, 246, 312
HpyCH4V TGCA 9 cut(s) 208, 319, 492, 606, 626, 901, 905, 1005, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 632, 1157, 1163
HpyF3I CTNAG 9 cut(s) 129, 186, 345, 501, 636, 847, 888, 1384, 1430
Hsp92II CATG 7 cut(s) 584, 905, 1094, 1100, 1105, 1127, 1174
HspAI GCGC 1 cut(s) 946
Kpn2I TCCGGA 1 cut(s) 1026
Ksp22I TGATCA 1 cut(s) 789
KspI CCGCGG 1 cut(s) 1155
Kzo9I GATC 2 cut(s) 583, 789
LmnI GCTCC 8 cut(s) 23, 286, 799, 1144, 1165, 1244, 1283, 1322
Lsp1109I GCAGC 7 cut(s) 176, 179, 515, 681, 917, 1144, 1315
LweI GCATC 4 cut(s) 13, 635, 992, 1007
MaeIII GTNAC 6 cut(s) 92, 246, 259, 422, 599, 842
MalI GATC 2 cut(s) 585, 791
MbiI CCGCTC 1 cut(s) 281
MboI GATC 2 cut(s) 583, 789
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 9 cut(s) 62, 120, 135, 291, 360, 555, 732, 1177, 1367
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 251
Mox20I TGGCCA 1 cut(s) 444
MroI TCCGGA 1 cut(s) 1026
MroXI GAANNNNTTC 1 cut(s) 124
MscI TGGCCA 1 cut(s) 444
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 3 cut(s) 579, 807, 1095
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 4 cut(s) 908, 1154, 1267, 1306
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 4 cut(s) 152, 468, 876, 988
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 4 cut(s) 152, 468, 876, 988
MvnI CGCG 2 cut(s) 475, 1154
MwoI GCNNNNNNNGC 3 cut(s) 632, 1157, 1163
NdeII GATC 2 cut(s) 583, 789
NlaIII CATG 7 cut(s) 584, 905, 1094, 1100, 1105, 1127, 1174
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 92, 246
NruI TCGCGA 1 cut(s) 475
NspI RCATGY 2 cut(s) 905, 1105
NspV TTCGAA 2 cut(s) 66, 707
PaeI GCATGC 1 cut(s) 905
PagI TCATGA 1 cut(s) 580
PctI GAATGC 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 4 cut(s) 686, 818, 860, 1412
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
Psp124BI GAGCTC 3 cut(s) 20, 1249, 1288
Psp6I CCWGG 4 cut(s) 150, 466, 874, 986
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 4 cut(s) 150, 466, 874, 986
PspPI GGNCC 1 cut(s) 1127
RruI TCGCGA 1 cut(s) 475
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 3 cut(s) 579, 807, 1095
SacI GAGCTC 3 cut(s) 20, 1249, 1288
SacII CCGCGG 1 cut(s) 1155
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 2 cut(s) 583, 789
Sau96I GGNCC 1 cut(s) 1127
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 4 cut(s) 152, 468, 876, 988
SduI GDGCHC 7 cut(s) 12, 20, 494, 1141, 1249, 1288, 1327
SfaNI GCATC 4 cut(s) 13, 635, 992, 1007
SfcI CTRYAG 1 cut(s) 997
Sfr303I CCGCGG 1 cut(s) 1155
SfuI TTCGAA 2 cut(s) 66, 707
SgrBI CCGCGG 1 cut(s) 1155
SmiMI CAYNNNNRTG 3 cut(s) 579, 807, 1095
SphI GCATGC 1 cut(s) 905
Sse9I AATT 9 cut(s) 62, 120, 135, 291, 360, 555, 732, 1177, 1367
SsiI CCGC 8 cut(s) 117, 279, 908, 1120, 1152, 1154, 1267, 1306
SspI AATATT 1 cut(s) 854
SstI GAGCTC 3 cut(s) 20, 1249, 1288
StyD4I CCNGG 4 cut(s) 150, 466, 874, 986
TaaI ACNGT 3 cut(s) 213, 246, 312
TaqI TCGA 6 cut(s) 66, 707, 1220, 1259, 1298, 1420
TasI AATT 9 cut(s) 62, 120, 135, 291, 360, 555, 732, 1177, 1367
TatI WGTACW 1 cut(s) 218
TauI GCSGC 3 cut(s) 1123, 1154, 1157
TfiI GAWTC 4 cut(s) 686, 818, 860, 1412
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 4 cut(s) 1232, 1239, 1317, 1349
TseFI GTSAC 2 cut(s) 92, 246
TseI GCWGC 7 cut(s) 164, 167, 528, 694, 905, 1157, 1303
Tsp45I GTSAC 2 cut(s) 92, 246
TspDTI ATGAA 5 cut(s) 72, 96, 102, 825, 1187
TspRI CASTG 4 cut(s) 1232, 1239, 1317, 1349
VneI GTGCAC 1 cut(s) 490
XapI RAATTY 3 cut(s) 62, 120, 360
XceI RCATGY 2 cut(s) 905, 1105
XmiI GTMKAC 1 cut(s) 1353
XmnI GAANNNNTTC 1 cut(s) 124
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.