pycom02g00680
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
370182 .. 373222
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00680.1

Sequence Viewer

Length: 1440 bp
ATGGCGGAGCACCGCGAGAGCTCCCATGCTCTCCCAGCAGAGAAACTACAGCCAAGGAAACAAGAACAAAAAGAAGGCGGCGATGGAGACGAAGGCGATGACGAAGAAGGAAAGCAACGACTCGGTGAATTTCAACCCGGCGAGCTAGAGAGTTCTGTATCCGAGTTGAGACAGACGCAATTAGAAACCCCAACGGCGCCTTCGACGCTGGAAGTTTCAGAGAACGATCAGTTTGCAGGTATGCAGCTTGATTCCGTGTCACAGTCGATTGATGGAGCTGAATTGCAGGAGAAACTTGGGCTGAGCCACCAGGAAATTTTGGCAAGTGTAACGAACCAGGATATTAAAACTCCGAAGCAAAGTCGGACTCAGTTGACTGTTTATCCAACTCCATTTTCAGAACTATCTCCCACTTCTGTCACTCAATCCATTTCATCTGCTCCAAGCCCAATTCCACTAGAACGAAGAGTTCCTCATGGGAAGACATCTGCTTCTGATGGTTACAACTGGCGGAAATATGGTCAGAAGCAAGTAAAGAGCCCTCAAGGTTCTCGAAGCTATTATAGGTGCACATTTTCTGAGTGTTACGCCAAGAAGATAGAATGCTGTGATCACTCAGGCCATGTAATAGAGATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCTGAAAAGTATCTGCATAAAGGAAAGTAAACTTGCACTCTCTGCTGAGTGTGTAAGATATAGTGTTGCTGCTGCAGAACATTCCTGCAGAATAGTTAATGACTCAGAGTTGTCCACATCTTCAAAGGAACCTATTCAAGAAACACCCTCAATTCCTGAAAGAAAACGGCAGAGCTCAAGTGACTCTGATGATAATGGCGATGTTAAAATCAAGGAGGAACATGGTGATGGTGATGAGCCAGAACCCAAACGAAGAATGAAGAAAAGCAATTCAGAATATTCCGCTTCTCTCTCAAAACCTGGCAAGAAACCTAAATTAGTTGTGCATGCGGCTGGGGATGTTGGAATATCAGGCGACGGATACAGATGGCGCAAATATGGACAGAAGATGGTGAAAGGAAATCCTCATCCCAGGAACTACTACAGATGTACTTCTGCTGGGTGTCCAGTCCGGAAGCAGATTGAAACAGCCGTAGATAACTCAAGTGCTGTAATTATAACATACAAGGGGGTACATGACCATGACATGCCTGTCCCTAAGAAGCGACATGGCCCTCCAAGCGCTCCTCTTGTTGCCGCTGCCGCTCCTGCTTCCATGAACAATTTGCATATCAAGAAAACCGATACAGTCCCAAAACCAATTTCGTCAACCCAGTGTTCAGTAGACACGGGCGGAGAATTGACGGGGGAGGCCTTGGACCTCGGAGGCGAGAAGGCAATGGAATCGGCTCGAACTCTTCTGAGCATTGGATTTGAATTAAAGCGTTGCTGA

Protein Analysis

480

Amino Acids

52.46

Weight (kDa)

6.62

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 166 - 221 3.1e-18 WRKY DNA -binding domain
WRKY PF03106 342 - 398 5.3e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
AasI GACNNNNNNGTC 1 cut(s) 1199
Acc36I ACCTGC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 1253
AccI GTMKAC 1 cut(s) 1332
AccII CGCG 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 1119
AciI CCGC 9 cut(s) 5, 13, 78, 511, 951, 998, 1245, 1251, 1341
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 2 cut(s) 128, 315
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 2 cut(s) 1099, 1182
AfeI AGCGCT 1 cut(s) 1231
AgsI TTSAA 5 cut(s) 134, 792, 806, 1133, 1424
AjnI CCWGG 4 cut(s) 309, 336, 967, 1079
AjuI GAANNNNNNNTTGG 6 cut(s) 184, 216, 379, 411, 1294, 1326
AluBI AGCT 6 cut(s) 21, 145, 247, 278, 558, 843
AluI AGCT 6 cut(s) 21, 145, 247, 278, 558, 843
Alw21I GWGCWC 4 cut(s) 12, 23, 572, 845
Alw26I GTCTC 2 cut(s) 81, 163
Alw44I GTGCAC 1 cut(s) 568
AlwI GGATC 1 cut(s) 656
Aor13HI TCCGGA 1 cut(s) 1119
Aor51HI AGCGCT 1 cut(s) 1231
AoxI GGCC 3 cut(s) 619, 1219, 1359
ApaLI GTGCAC 1 cut(s) 568
ApeKI GCWGC 4 cut(s) 244, 737, 740, 1247
ApoI RAATTY 2 cut(s) 128, 315
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 3 cut(s) 199, 1041, 1232
AspS9I GGNCC 2 cut(s) 1220, 1366
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 4 cut(s) 137, 905, 911, 1072
AvaII GGWCC 1 cut(s) 1366
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 3 cut(s) 23, 542, 845
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 4 cut(s) 12, 23, 572, 845
BbvI GCAGC 4 cut(s) 256, 724, 727, 1234
BccI CCATC 6 cut(s) 77, 266, 491, 890, 1029, 1051
BceAI ACGGC 3 cut(s) 210, 851, 1124
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 1374, 1408
BciT130I CCWGG 4 cut(s) 311, 338, 969, 1081
BciVI GTATCC 2 cut(s) 169, 1022
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 81, 163
BfaI CTAG 2 cut(s) 146, 458
BfmI CTRYAG 4 cut(s) 47, 741, 754, 1090
BfoI RGCGCY 2 cut(s) 200, 1233
BfuAI ACCTGC 1 cut(s) 227
BfuI GTATCC 2 cut(s) 169, 1022
BisI GCNGC 8 cut(s) 79, 245, 738, 741, 999, 1245, 1248, 1251
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 8 cut(s) 80, 246, 739, 742, 1000, 1246, 1249, 1252
Bme1390I CCNGG 5 cut(s) 138, 311, 338, 969, 1081
Bme18I GGWCC 1 cut(s) 1366
BmgT120I GGNCC 2 cut(s) 1220, 1366
BmiI GGNNCC 2 cut(s) 198, 798
BmrFI CCNGG 5 cut(s) 138, 311, 338, 969, 1081
BmrI ACTGGG 1 cut(s) 1315
BmuI ACTGGG 1 cut(s) 1315
BpiI GAAGAC 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 302
BpuEI CTTGAG 3 cut(s) 528, 829, 1135
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 53, 1079, 1362, 1369
BsaWI WCCGGW 1 cut(s) 1119
Bse1I ACTGG 3 cut(s) 512, 1115, 1321
Bse3DI GCAATG 1 cut(s) 1392
BseAI TCCGGA 1 cut(s) 1119
BseBI CCWGG 4 cut(s) 311, 338, 969, 1081
BseDI CCNNGG 4 cut(s) 53, 1079, 1362, 1369
BseGI GGATG 2 cut(s) 1012, 1075
BseMI GCAATG 1 cut(s) 1392
BseMII CTCAG 7 cut(s) 293, 383, 570, 630, 705, 786, 1400
BseNI ACTGG 3 cut(s) 512, 1115, 1321
BseRI GAGGAG 1 cut(s) 1224
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 4 cut(s) 256, 724, 727, 1234
BseYI CCCAGC 3 cut(s) 34, 1001, 1106
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 621, 1221, 1361
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 4 cut(s) 12, 23, 572, 845
BsiSI CCGG 2 cut(s) 138, 1120
BslFI GGGAC 2 cut(s) 1187, 1283
BsmAI GTCTC 2 cut(s) 81, 163
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 1187, 1283
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 3 cut(s) 621, 1221, 1361
Bsp1286I GDGCHC 5 cut(s) 12, 23, 542, 572, 845
Bsp13I TCCGGA 1 cut(s) 1119
Bsp143I GATC 3 cut(s) 226, 610, 661
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 9 cut(s) 5, 13, 78, 511, 951, 998, 1245, 1251, 1341
BspANI GGCC 3 cut(s) 621, 1221, 1361
BspCNI CTCAG 7 cut(s) 294, 382, 571, 629, 706, 785, 1401
BspEI TCCGGA 1 cut(s) 1119
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 198, 798
BspMAI CTGCAG 2 cut(s) 745, 758
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 1392
BsrI ACTGG 3 cut(s) 512, 1115, 1321
BssECI CCNNGG 4 cut(s) 53, 1079, 1362, 1369
BssMI GATC 3 cut(s) 226, 610, 661
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 53, 1362
Bst2UI CCWGG 4 cut(s) 311, 338, 969, 1081
Bst4CI ACNGT 3 cut(s) 264, 379, 1297
Bst6I CTCTTC 2 cut(s) 460, 1410
BstACI GRCGYC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 710
BstC8I GCNNGC 2 cut(s) 143, 996
BstDEI CTNAG 8 cut(s) 302, 369, 579, 616, 714, 772, 1206, 1409
BstF5I GGATG 2 cut(s) 1012, 1075
BstFNI CGCG 1 cut(s) 15
BstH2I RGCGCY 2 cut(s) 200, 1233
BstHHI GCGC 3 cut(s) 199, 1041, 1232
BstKTI GATC 3 cut(s) 229, 613, 664
BstMAI GTCTC 2 cut(s) 81, 163
BstMBI GATC 3 cut(s) 226, 610, 661
BstMWI GCNNNNNNNGC 6 cut(s) 35, 205, 710, 1227, 1250, 1256
BstNI CCWGG 4 cut(s) 311, 338, 969, 1081
BstNSI RCATGY 2 cut(s) 998, 1198
BstSCI CCNGG 5 cut(s) 136, 309, 336, 967, 1079
BstSFI CTRYAG 4 cut(s) 47, 741, 754, 1090
BstSLI GKGCMC 1 cut(s) 572
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 4 cut(s) 256, 724, 727, 1234
BstV2I GAAGAC 1 cut(s) 488
BsuI GTATCC 2 cut(s) 169, 1022
BsuRI GGCC 3 cut(s) 621, 1221, 1361
BtgZI GCGATG 3 cut(s) 96, 111, 882
BtsCI GGATG 2 cut(s) 1012, 1075
BtsIMutI CAGTG 1 cut(s) 1328
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 143, 996
CciI TCATGA 1 cut(s) 658
CfoI GCGC 3 cut(s) 199, 1041, 1232
Cfr13I GGNCC 2 cut(s) 1220, 1366
CseI GACGC 2 cut(s) 184, 214
Csp6I GTAC 2 cut(s) 1098, 1181
CviQI GTAC 2 cut(s) 1098, 1181
DdeI CTNAG 8 cut(s) 302, 369, 579, 616, 714, 772, 1206, 1409
DinI GGCGCC 1 cut(s) 198
DpnI GATC 3 cut(s) 228, 612, 663
DpnII GATC 3 cut(s) 226, 610, 661
DrdI GACNNNNNNGTC 1 cut(s) 1199
DseDI GACNNNNNNGTC 1 cut(s) 1199
Eam1104I CTCTTC 2 cut(s) 460, 1410
EarI CTCTTC 2 cut(s) 460, 1410
EciI GGCGGA 3 cut(s) 20, 526, 1356
Ecl136II GAGCTC 2 cut(s) 21, 843
Eco130I CCWWGG 2 cut(s) 53, 1362
Eco147I AGGCCT 1 cut(s) 1361
Eco24I GRGCYC 3 cut(s) 23, 542, 845
Eco47I GGWCC 1 cut(s) 1366
Eco47III AGCGCT 1 cut(s) 1231
Eco53kI GAGCTC 2 cut(s) 21, 843
EcoICRI GAGCTC 2 cut(s) 21, 843
EcoRII CCWGG 4 cut(s) 309, 336, 967, 1079
EcoT14I CCWWGG 2 cut(s) 53, 1362
EcoT38I GRGCYC 3 cut(s) 23, 542, 845
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
ErhI CCWWGG 2 cut(s) 53, 1362
Esp3I CGTCTC 1 cut(s) 81
FaqI GGGAC 2 cut(s) 1187, 1283
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 1332
Fnu4HI GCNGC 8 cut(s) 79, 245, 738, 741, 999, 1245, 1248, 1251
FokI GGATG 2 cut(s) 1019, 1062
FriOI GRGCYC 3 cut(s) 23, 542, 845
Fsp4HI GCNGC 8 cut(s) 79, 245, 738, 741, 999, 1245, 1248, 1251
FspBI CTAG 2 cut(s) 146, 458
GlaI GCGC 3 cut(s) 198, 1040, 1231
GluI GCNGC 8 cut(s) 79, 245, 738, 741, 999, 1245, 1248, 1251
GsaI CCCAGC 3 cut(s) 38, 1005, 1110
HaeII RGCGCY 2 cut(s) 200, 1233
HaeIII GGCC 3 cut(s) 621, 1221, 1361
HapII CCGG 2 cut(s) 138, 1120
HgaI GACGC 2 cut(s) 184, 214
HhaI GCGC 3 cut(s) 199, 1041, 1232
Hin1I GRCGYC 1 cut(s) 197
Hin6I GCGC 3 cut(s) 197, 1039, 1230
HinP1I GCGC 3 cut(s) 197, 1039, 1230
HincII GTYRAC 2 cut(s) 375, 1317
HindII GTYRAC 2 cut(s) 375, 1317
HinfI GANTC 6 cut(s) 120, 251, 367, 770, 851, 1391
HpaII CCGG 2 cut(s) 138, 1120
HphI GGTGA 4 cut(s) 137, 905, 911, 1072
Hpy166II GTNNAC 7 cut(s) 375, 570, 640, 698, 783, 1317, 1333
Hpy188III TCNNGA 6 cut(s) 552, 659, 806, 824, 1120, 1282
Hpy8I GTNNAC 7 cut(s) 375, 570, 640, 698, 783, 1317, 1333
Hpy99I CGWCG 2 cut(s) 208, 1028
HpyAV CCTTC 5 cut(s) 68, 86, 101, 210, 1375
HpyCH4III ACNGT 3 cut(s) 264, 379, 1297
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 205, 710, 1227, 1250, 1256
HpyF3I CTNAG 8 cut(s) 302, 369, 579, 616, 714, 772, 1206, 1409
Hsp92I GRCGYC 1 cut(s) 197
HspAI GCGC 3 cut(s) 197, 1039, 1230
KasI GGCGCC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 1119
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 3 cut(s) 226, 610, 661
LmnI GCTCC 6 cut(s) 7, 26, 275, 445, 1237, 1258
Lsp1109I GCAGC 4 cut(s) 256, 724, 727, 1234
MaeI CTAG 2 cut(s) 146, 458
MaeIII GTNAC 6 cut(s) 258, 328, 418, 500, 584, 848
MalI GATC 3 cut(s) 228, 612, 663
MbiI CCGCTC 1 cut(s) 1253
MboI GATC 3 cut(s) 226, 610, 661
MboII GAAGA 9 cut(s) 116, 477, 493, 607, 780, 933, 940, 1066, 1397
MhlI GDGCHC 5 cut(s) 12, 23, 542, 572, 845
Mly113I GGCGCC 1 cut(s) 197
MlyI GAGTC 4 cut(s) 114, 361, 764, 845
MmeI TCCRAC 3 cut(s) 344, 410, 991
MroI TCCGGA 1 cut(s) 1119
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 4 cut(s) 345, 765, 873, 1427
MslI CAYNNNNRTG 3 cut(s) 657, 894, 1188
MspA1I CMGCKG 1 cut(s) 1247
MspI CCGG 2 cut(s) 138, 1120
MspR9I CCNGG 5 cut(s) 138, 311, 338, 969, 1081
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 4 cut(s) 311, 338, 969, 1081
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 6 cut(s) 35, 205, 710, 1227, 1250, 1256
NarI GGCGCC 1 cut(s) 197
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 226, 610, 661
NlaIV GGNNCC 2 cut(s) 198, 798
NmuCI GTSAC 3 cut(s) 258, 418, 848
NspI RCATGY 2 cut(s) 998, 1198
PaeI GCATGC 1 cut(s) 998
PagI TCATGA 1 cut(s) 658
PceI AGGCCT 1 cut(s) 1361
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 251, 1391
PkrI GCNGC 8 cut(s) 80, 246, 739, 742, 1000, 1246, 1249, 1252
PleI GAGTC 4 cut(s) 114, 361, 764, 845
PluTI GGCGCC 1 cut(s) 200
PpsI GAGTC 4 cut(s) 114, 361, 764, 845
PsiI TTATAA 1 cut(s) 1166
Psp124BI GAGCTC 2 cut(s) 23, 845
Psp6I CCWGG 4 cut(s) 309, 336, 967, 1079
PspFI CCCAGC 3 cut(s) 34, 1001, 1106
PspGI CCWGG 4 cut(s) 309, 336, 967, 1079
PspN4I GGNNCC 2 cut(s) 198, 798
PspPI GGNCC 2 cut(s) 1220, 1366
PstI CTGCAG 2 cut(s) 745, 758
RsaI GTAC 2 cut(s) 1099, 1182
RsaNI GTAC 2 cut(s) 1098, 1181
RseI CAYNNNNRTG 3 cut(s) 657, 894, 1188
SacI GAGCTC 2 cut(s) 23, 845
SaqAI TTAA 4 cut(s) 345, 765, 873, 1427
SatI GCNGC 8 cut(s) 79, 245, 738, 741, 999, 1245, 1248, 1251
Sau3AI GATC 3 cut(s) 226, 610, 661
Sau96I GGNCC 2 cut(s) 1220, 1366
SchI GAGTC 4 cut(s) 114, 361, 764, 845
ScrFI CCNGG 5 cut(s) 138, 311, 338, 969, 1081
SduI GDGCHC 5 cut(s) 12, 23, 542, 572, 845
SfcI CTRYAG 4 cut(s) 47, 741, 754, 1090
SfoI GGCGCC 1 cut(s) 198
SinI GGWCC 1 cut(s) 1366
SmiMI CAYNNNNRTG 3 cut(s) 657, 894, 1188
SmlI CTYRAG 3 cut(s) 543, 844, 1150
SmoI CTYRAG 3 cut(s) 543, 844, 1150
SphI GCATGC 1 cut(s) 998
SseBI AGGCCT 1 cut(s) 1361
SsiI CCGC 9 cut(s) 5, 13, 78, 511, 951, 998, 1245, 1251, 1341
SspDI GGCGCC 1 cut(s) 196
SspI AATATT 1 cut(s) 947
SspMI CTAG 2 cut(s) 146, 458
SstI GAGCTC 2 cut(s) 23, 845
StuI AGGCCT 1 cut(s) 1361
StyD4I CCNGG 5 cut(s) 136, 309, 336, 967, 1079
StyI CCWWGG 2 cut(s) 53, 1362
TaaI ACNGT 3 cut(s) 264, 379, 1297
TaqI TCGA 4 cut(s) 203, 266, 553, 1399
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 4 cut(s) 81, 1001, 1247, 1253
TfiI GAWTC 2 cut(s) 251, 1391
Tru1I TTAA 4 cut(s) 345, 765, 873, 1427
Tru9I TTAA 4 cut(s) 345, 765, 873, 1427
TscAI CASTG 1 cut(s) 1328
TseFI GTSAC 3 cut(s) 258, 418, 848
TseI GCWGC 4 cut(s) 244, 737, 740, 1247
Tsp45I GTSAC 3 cut(s) 258, 418, 848
TspDTI ATGAA 3 cut(s) 423, 941, 1280
TspGWI ACGGA 2 cut(s) 244, 1041
TspRI CASTG 1 cut(s) 1328
VneI GTGCAC 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 1366
XapI RAATTY 2 cut(s) 128, 315
XceI RCATGY 2 cut(s) 998, 1198
XmiI GTMKAC 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 2 cut(s) 146, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.