WRKY transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30935 |
| fragaria_vesca | FvH4_1g00960 FvH4_1g00960 |
| malus_domestica | MD02G1007900.v1.1 MD15G1152100.v1.1 |
| prunus_persica | Prupe.7G262600_v2.0.a1 |
| pyrus_communis | pycom02g00680 pycom02g00690 pycom15g13670 |
| rosa_chinensis | RchiOBHm_Chr2g0085691 |
| rosa_laevigata | RLG00000015712 |
| rosa_multiflora | Rmu_sc0007631.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00155120 |
| rosa_rugosa | Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600 |
| rosa_samantha | Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900 |
| rosa_wichuraiana | Rw2G001020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1477, 1555 |
| Acc36I | ACCTGC | 1 cut(s) | 323 |
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccBSI | CCGCTC | 3 cut(s) | 60, 266, 530 |
| AccI | GTMKAC | 1 cut(s) | 1602 |
| AccII | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| AccIII | TCCGGA | 1 cut(s) | 1275 |
| AclWI | GGATC | 3 cut(s) | 107, 330, 827 |
| AcoI | YGGCCR | 2 cut(s) | 64, 691 |
| AcsI | RAATTY | 3 cut(s) | 176, 234, 609 |
| AcuI | CTGAAG | 3 cut(s) | 164, 648, 1473 |
| AfaI | GTAC | 2 cut(s) | 469, 589 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 437, 843, 1236 |
| AgsI | TTSAA | 7 cut(s) | 290, 773, 1084, 1120, 1289, 1587, 1694 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 625 |
| AjnI | CCWGG | 4 cut(s) | 399, 715, 1123, 1235 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 219, 251 |
| AluBI | AGCT | 7 cut(s) | 132, 258, 368, 943, 1496, 1535, 1667 |
| AluI | AGCT | 7 cut(s) | 132, 258, 368, 943, 1496, 1535, 1667 |
| Alw21I | GWGCWC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| Alw26I | GTCTC | 2 cut(s) | 270, 1622 |
| Alw44I | GTGCAC | 1 cut(s) | 739 |
| AlwI | GGATC | 3 cut(s) | 107, 330, 827 |
| Ama87I | CYCGRG | 1 cut(s) | 435 |
| Aor13HI | TCCGGA | 1 cut(s) | 1275 |
| AoxI | GGCC | 4 cut(s) | 64, 691, 790, 1375 |
| ApaLI | GTGCAC | 1 cut(s) | 739 |
| ApeKI | GCWGC | 7 cut(s) | 413, 416, 777, 943, 1154, 1406, 1552 |
| ApoI | RAATTY | 3 cut(s) | 176, 234, 609 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 269, 301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 238 |
| AspLEI | GCGC | 2 cut(s) | 283, 1197 |
| AspS9I | GGNCC | 2 cut(s) | 109, 1376 |
| AsuHPI | GGTGA | 9 cut(s) | 489, 516, 1040, 1190, 1228, 1490, 1529, 1637, 1658 |
| AsuII | TTCGAA | 2 cut(s) | 180, 956 |
| AvaI | CYCGRG | 1 cut(s) | 435 |
| AvaII | GGWCC | 1 cut(s) | 109 |
| AxyI | CCTNAGG | 1 cut(s) | 594 |
| BaeGI | GKGCMC | 1 cut(s) | 743 |
| BalI | TGGCCA | 1 cut(s) | 693 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BanII | GRGCYC | 4 cut(s) | 134, 370, 1498, 1537 |
| Bbv12I | GWGCWC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| BbvI | GCAGC | 7 cut(s) | 425, 428, 764, 930, 1166, 1393, 1564 |
| BccI | CCATC | 6 cut(s) | 356, 662, 1013, 1175, 1207, 1239 |
| BceAI | ACGGC | 2 cut(s) | 1280, 1298 |
| BciT130I | CCWGG | 4 cut(s) | 401, 717, 1125, 1237 |
| BciVI | GTATCC | 2 cut(s) | 1178, 1329 |
| BclI | TGATCA | 1 cut(s) | 1038 |
| BcoDI | GTCTC | 2 cut(s) | 270, 1622 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BfmI | CTRYAG | 1 cut(s) | 1246 |
| BfuAI | ACCTGC | 1 cut(s) | 323 |
| BfuI | GTATCC | 2 cut(s) | 1178, 1329 |
| BmcAI | AGTACT | 1 cut(s) | 469 |
| Bme1390I | CCNGG | 4 cut(s) | 401, 717, 1125, 1237 |
| Bme18I | GGWCC | 1 cut(s) | 109 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 625 |
| BmeT110I | CYCGRG | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 1376 |
| BmiI | GGNNCC | 2 cut(s) | 303, 381 |
| BmrFI | CCNGG | 4 cut(s) | 401, 717, 1125, 1237 |
| BmrI | ACTGGG | 2 cut(s) | 1468, 1585 |
| BmsI | GCATC | 4 cut(s) | 127, 884, 1241, 1256 |
| BmuI | ACTGGG | 2 cut(s) | 1468, 1585 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1375, 1407 |
| BpmI | CTGGAG | 2 cut(s) | 282, 699 |
| Bpu14I | TTCGAA | 2 cut(s) | 180, 956 |
| BsaI | GGTCTC | 1 cut(s) | 1622 |
| BsaJI | CCNNGG | 3 cut(s) | 839, 1235, 1401 |
| BsaWI | WCCGGW | 1 cut(s) | 1275 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 116, 146 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 437, 843, 1236 |
| Bse1I | ACTGG | 5 cut(s) | 111, 683, 1474, 1591, 1627 |
| Bse21I | CCTNAGG | 1 cut(s) | 594 |
| Bse3DI | GCAATG | 2 cut(s) | 563, 1662 |
| BseAI | TCCGGA | 1 cut(s) | 1275 |
| BseBI | CCWGG | 4 cut(s) | 401, 717, 1125, 1237 |
| BseDI | CCNNGG | 3 cut(s) | 839, 1235, 1401 |
| BseGI | GGATG | 4 cut(s) | 175, 1168, 1231, 1271 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 437, 843, 1236 |
| BseMI | GCAATG | 2 cut(s) | 563, 1662 |
| BseMII | CTCAG | 6 cut(s) | 306, 320, 585, 876, 1110, 1670 |
| BseNI | ACTGG | 5 cut(s) | 111, 683, 1474, 1591, 1627 |
| BseRI | GAGGAG | 5 cut(s) | 23, 611, 859, 1061, 1380 |
| BseSI | GKGCMC | 1 cut(s) | 743 |
| BseXI | GCAGC | 7 cut(s) | 425, 428, 764, 930, 1166, 1393, 1564 |
| BseYI | CCCAGC | 1 cut(s) | 1512 |
| BsgI | GTGCAG | 2 cut(s) | 351, 838 |
| Bsh1236I | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| BshFI | GGCC | 4 cut(s) | 66, 693, 792, 1377 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiHKAI | GWGCWC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| BsiHKCI | CYCGRG | 1 cut(s) | 435 |
| BsiSI | CCGG | 2 cut(s) | 63, 1276 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 437, 843, 1236 |
| BsmAI | GTCTC | 2 cut(s) | 270, 1622 |
| BsmBI | CGTCTC | 1 cut(s) | 270 |
| BsmI | GAATGC | 1 cut(s) | 779 |
| BsnI | GGCC | 4 cut(s) | 66, 693, 792, 1377 |
| Bso31I | GGTCTC | 1 cut(s) | 1622 |
| BsoBI | CYCGRG | 1 cut(s) | 435 |
| Bsp119I | TTCGAA | 2 cut(s) | 180, 956 |
| Bsp1286I | GDGCHC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| Bsp13I | TCCGGA | 1 cut(s) | 1275 |
| Bsp143I | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| Bsp68I | TCGCGA | 1 cut(s) | 724 |
| BspANI | GGCC | 4 cut(s) | 66, 693, 792, 1377 |
| BspCNI | CTCAG | 6 cut(s) | 307, 319, 586, 877, 1109, 1671 |
| BspEI | TCCGGA | 1 cut(s) | 1275 |
| BspFNI | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| BspHI | TCATGA | 1 cut(s) | 829 |
| BspLI | GGNNCC | 2 cut(s) | 303, 381 |
| BspMI | ACCTGC | 1 cut(s) | 323 |
| BspPI | GGATC | 3 cut(s) | 107, 330, 827 |
| BspT104I | TTCGAA | 2 cut(s) | 180, 956 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BspTNI | GGTCTC | 1 cut(s) | 1622 |
| BsrBI | CCGCTC | 3 cut(s) | 60, 266, 530 |
| BsrDI | GCAATG | 2 cut(s) | 563, 1662 |
| BsrI | ACTGG | 5 cut(s) | 111, 683, 1474, 1591, 1627 |
| BssECI | CCNNGG | 3 cut(s) | 839, 1235, 1401 |
| BssMI | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| Bst2UI | CCWGG | 4 cut(s) | 401, 717, 1125, 1237 |
| Bst4CI | ACNGT | 4 cut(s) | 15, 462, 495, 561 |
| Bst6I | CTCTTC | 2 cut(s) | 159, 1680 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 881 |
| BstBI | TTCGAA | 2 cut(s) | 180, 956 |
| BstC8I | GCNNGC | 2 cut(s) | 432, 1152 |
| BstDEI | CTNAG | 8 cut(s) | 306, 315, 594, 885, 1096, 1137, 1633, 1679 |
| BstDSI | CCRYGG | 1 cut(s) | 1401 |
| BstF5I | GGATG | 4 cut(s) | 175, 1168, 1231, 1271 |
| BstFNI | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| BstHHI | GCGC | 2 cut(s) | 283, 1197 |
| BstKTI | GATC | 4 cut(s) | 102, 325, 835, 1041 |
| BstMAI | GTCTC | 2 cut(s) | 270, 1622 |
| BstMBI | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 881, 1406, 1412 |
| BstNI | CCWGG | 4 cut(s) | 401, 717, 1125, 1237 |
| BstNSI | RCATGY | 2 cut(s) | 1154, 1354 |
| BstSCI | CCNGG | 4 cut(s) | 399, 715, 1123, 1235 |
| BstSFI | CTRYAG | 1 cut(s) | 1246 |
| BstSLI | GKGCMC | 1 cut(s) | 743 |
| BstUI | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| BstV1I | GCAGC | 7 cut(s) | 425, 428, 764, 930, 1166, 1393, 1564 |
| Bsu36I | CCTNAGG | 1 cut(s) | 594 |
| BsuI | GTATCC | 2 cut(s) | 1178, 1329 |
| BsuRI | GGCC | 4 cut(s) | 66, 693, 792, 1377 |
| BtgI | CCRYGG | 1 cut(s) | 1401 |
| BtsCI | GGATG | 4 cut(s) | 175, 1168, 1231, 1271 |
| BtsIMutI | CAGTG | 5 cut(s) | 332, 1481, 1488, 1566, 1598 |
| BtuMI | TCGCGA | 1 cut(s) | 724 |
| BveI | ACCTGC | 1 cut(s) | 323 |
| Cac8I | GCNNGC | 2 cut(s) | 432, 1152 |
| CciI | TCATGA | 1 cut(s) | 829 |
| CfoI | GCGC | 2 cut(s) | 283, 1197 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 1376 |
| Cfr42I | CCGCGG | 1 cut(s) | 1404 |
| CseI | GACGC | 2 cut(s) | 287, 1558 |
| Csp6I | GTAC | 2 cut(s) | 468, 588 |
| CviAII | CATG | 7 cut(s) | 830, 1151, 1340, 1346, 1351, 1373, 1420 |
| CviQI | GTAC | 2 cut(s) | 468, 588 |
| DdeI | CTNAG | 8 cut(s) | 306, 315, 594, 885, 1096, 1137, 1633, 1679 |
| DpnI | GATC | 4 cut(s) | 101, 324, 834, 1040 |
| DpnII | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1477, 1555 |
| DriI | GACNNNNNGTC | 1 cut(s) | 625 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1477, 1555 |
| EaeI | YGGCCR | 2 cut(s) | 64, 691 |
| Eam1104I | CTCTTC | 2 cut(s) | 159, 1680 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 625 |
| EarI | CTCTTC | 2 cut(s) | 159, 1680 |
| EciI | GGCGGA | 1 cut(s) | 32 |
| Ecl136II | GAGCTC | 4 cut(s) | 132, 368, 1496, 1535 |
| Eco24I | GRGCYC | 4 cut(s) | 134, 370, 1498, 1537 |
| Eco31I | GGTCTC | 1 cut(s) | 1622 |
| Eco47I | GGWCC | 1 cut(s) | 109 |
| Eco53kI | GAGCTC | 4 cut(s) | 132, 368, 1496, 1535 |
| Eco57I | CTGAAG | 3 cut(s) | 164, 648, 1473 |
| Eco81I | CCTNAGG | 1 cut(s) | 594 |
| Eco88I | CYCGRG | 1 cut(s) | 435 |
| EcoICRI | GAGCTC | 4 cut(s) | 132, 368, 1496, 1535 |
| EcoRI | GAATTC | 2 cut(s) | 176, 234 |
| EcoRII | CCWGG | 4 cut(s) | 399, 715, 1123, 1235 |
| EcoT38I | GRGCYC | 4 cut(s) | 134, 370, 1498, 1537 |
| Esp3I | CGTCTC | 1 cut(s) | 270 |
| FaeI | CATG | 7 cut(s) | 833, 1154, 1343, 1349, 1354, 1376, 1423 |
| FatI | CATG | 7 cut(s) | 829, 1150, 1339, 1345, 1350, 1372, 1419 |
| FauI | CCCGC | 2 cut(s) | 535, 1150 |
| FauNDI | CATATG | 1 cut(s) | 86 |
| FbaI | TGATCA | 1 cut(s) | 1038 |
| FblI | GTMKAC | 1 cut(s) | 1602 |
| FokI | GGATG | 4 cut(s) | 182, 1175, 1218, 1278 |
| FriOI | GRGCYC | 4 cut(s) | 134, 370, 1498, 1537 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GlaI | GCGC | 2 cut(s) | 282, 1196 |
| GsaI | CCCAGC | 1 cut(s) | 1516 |
| GsuI | CTGGAG | 2 cut(s) | 282, 699 |
| HaeIII | GGCC | 4 cut(s) | 66, 693, 792, 1377 |
| HapII | CCGG | 2 cut(s) | 63, 1276 |
| HgaI | GACGC | 2 cut(s) | 287, 1558 |
| HhaI | GCGC | 2 cut(s) | 283, 1197 |
| Hin1II | CATG | 7 cut(s) | 833, 1154, 1343, 1349, 1354, 1376, 1423 |
| Hin6I | GCGC | 2 cut(s) | 281, 1195 |
| HinP1I | GCGC | 2 cut(s) | 281, 1195 |
| HincII | GTYRAC | 2 cut(s) | 312, 346 |
| HindII | GTYRAC | 2 cut(s) | 312, 346 |
| HinfI | GANTC | 7 cut(s) | 114, 269, 935, 1013, 1067, 1109, 1661 |
| HpaI | GTTAAC | 2 cut(s) | 312, 346 |
| HpaII | CCGG | 2 cut(s) | 63, 1276 |
| HphI | GGTGA | 9 cut(s) | 489, 516, 1040, 1190, 1228, 1490, 1529, 1637, 1658 |
| Hpy166II | GTNNAC | 8 cut(s) | 312, 346, 741, 811, 1486, 1525, 1564, 1603 |
| Hpy8I | GTNNAC | 8 cut(s) | 312, 346, 741, 811, 1486, 1525, 1564, 1603 |
| Hpy99I | CGWCG | 2 cut(s) | 358, 1552 |
| HpyAV | CCTTC | 5 cut(s) | 249, 313, 565, 1213, 1448 |
| HpyCH4III | ACNGT | 4 cut(s) | 15, 462, 495, 561 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 881, 1406, 1412 |
| HpyF3I | CTNAG | 8 cut(s) | 306, 315, 594, 885, 1096, 1137, 1633, 1679 |
| Hsp92II | CATG | 7 cut(s) | 833, 1154, 1343, 1349, 1354, 1376, 1423 |
| HspAI | GCGC | 2 cut(s) | 281, 1195 |
| Kpn2I | TCCGGA | 1 cut(s) | 1275 |
| Ksp22I | TGATCA | 1 cut(s) | 1038 |
| KspAI | GTTAAC | 2 cut(s) | 312, 346 |
| KspI | CCGCGG | 1 cut(s) | 1404 |
| Kzo9I | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| Lsp1109I | GCAGC | 7 cut(s) | 425, 428, 764, 930, 1166, 1393, 1564 |
| LweI | GCATC | 4 cut(s) | 127, 884, 1241, 1256 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeIII | GTNAC | 6 cut(s) | 249, 495, 508, 671, 848, 1091 |
| MalI | GATC | 4 cut(s) | 101, 324, 834, 1040 |
| MbiI | CCGCTC | 3 cut(s) | 60, 266, 530 |
| MboI | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MhlI | GDGCHC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| MlsI | TGGCCA | 1 cut(s) | 693 |
| MluNI | TGGCCA | 1 cut(s) | 693 |
| MlyI | GAGTC | 2 cut(s) | 278, 1007 |
| MmeI | TCCRAC | 1 cut(s) | 500 |
| Mox20I | TGGCCA | 1 cut(s) | 693 |
| MroI | TCCGGA | 1 cut(s) | 1275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 238 |
| MscI | TGGCCA | 1 cut(s) | 693 |
| MseI | TTAA | 3 cut(s) | 311, 345, 624 |
| MslI | CAYNNNNRTG | 3 cut(s) | 828, 1056, 1344 |
| Msp20I | TGGCCA | 1 cut(s) | 693 |
| MspA1I | CMGCKG | 4 cut(s) | 1157, 1403, 1516, 1555 |
| MspI | CCGG | 2 cut(s) | 63, 1276 |
| MspR9I | CCNGG | 4 cut(s) | 401, 717, 1125, 1237 |
| MunI | CAATTG | 1 cut(s) | 384 |
| Mva1269I | GAATGC | 1 cut(s) | 779 |
| MvaI | CCWGG | 4 cut(s) | 401, 717, 1125, 1237 |
| MvnI | CGCG | 5 cut(s) | 48, 281, 283, 724, 1403 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 881, 1406, 1412 |
| NdeI | CATATG | 1 cut(s) | 86 |
| NdeII | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| NlaIII | CATG | 7 cut(s) | 833, 1154, 1343, 1349, 1354, 1376, 1423 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 381 |
| NmuCI | GTSAC | 1 cut(s) | 495 |
| NruI | TCGCGA | 1 cut(s) | 724 |
| NspI | RCATGY | 2 cut(s) | 1154, 1354 |
| NspV | TTCGAA | 2 cut(s) | 180, 956 |
| PaeI | GCATGC | 1 cut(s) | 1154 |
| PagI | TCATGA | 1 cut(s) | 829 |
| PctI | GAATGC | 1 cut(s) | 779 |
| PdmI | GAANNNNTTC | 1 cut(s) | 238 |
| PfeI | GAWTC | 5 cut(s) | 114, 935, 1067, 1109, 1661 |
| PleI | GAGTC | 2 cut(s) | 277, 1007 |
| PpsI | GAGTC | 2 cut(s) | 277, 1007 |
| Psp124BI | GAGCTC | 4 cut(s) | 134, 370, 1498, 1537 |
| Psp6I | CCWGG | 4 cut(s) | 399, 715, 1123, 1235 |
| PspFI | CCCAGC | 1 cut(s) | 1512 |
| PspGI | CCWGG | 4 cut(s) | 399, 715, 1123, 1235 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 381 |
| PspPI | GGNCC | 2 cut(s) | 109, 1376 |
| RruI | TCGCGA | 1 cut(s) | 724 |
| RsaI | GTAC | 2 cut(s) | 469, 589 |
| RsaNI | GTAC | 2 cut(s) | 468, 588 |
| RseI | CAYNNNNRTG | 3 cut(s) | 828, 1056, 1344 |
| SacI | GAGCTC | 4 cut(s) | 134, 370, 1498, 1537 |
| SacII | CCGCGG | 1 cut(s) | 1404 |
| SaqAI | TTAA | 3 cut(s) | 311, 345, 624 |
| Sau3AI | GATC | 4 cut(s) | 99, 322, 832, 1038 |
| Sau96I | GGNCC | 2 cut(s) | 109, 1376 |
| ScaI | AGTACT | 1 cut(s) | 469 |
| SchI | GAGTC | 2 cut(s) | 278, 1007 |
| ScrFI | CCNGG | 4 cut(s) | 401, 717, 1125, 1237 |
| SduI | GDGCHC | 7 cut(s) | 134, 370, 743, 1390, 1498, 1537, 1576 |
| SfaNI | GCATC | 4 cut(s) | 127, 884, 1241, 1256 |
| SfcI | CTRYAG | 1 cut(s) | 1246 |
| Sfr303I | CCGCGG | 1 cut(s) | 1404 |
| SfuI | TTCGAA | 2 cut(s) | 180, 956 |
| SgrBI | CCGCGG | 1 cut(s) | 1404 |
| SinI | GGWCC | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 828, 1056, 1344 |
| SphI | GCATGC | 1 cut(s) | 1154 |
| SspI | AATATT | 1 cut(s) | 1103 |
| SspMI | CTAG | 1 cut(s) | 296 |
| SstI | GAGCTC | 4 cut(s) | 134, 370, 1498, 1537 |
| StyD4I | CCNGG | 4 cut(s) | 399, 715, 1123, 1235 |
| TaaI | ACNGT | 4 cut(s) | 15, 462, 495, 561 |
| TaqI | TCGA | 7 cut(s) | 180, 272, 956, 1469, 1508, 1547, 1669 |
| TaqII | GACCGA | 1 cut(s) | 126 |
| TatI | WGTACW | 1 cut(s) | 467 |
| TauI | GCSGC | 4 cut(s) | 48, 1372, 1403, 1406 |
| TfiI | GAWTC | 5 cut(s) | 114, 935, 1067, 1109, 1661 |
| Tru1I | TTAA | 3 cut(s) | 311, 345, 624 |
| Tru9I | TTAA | 3 cut(s) | 311, 345, 624 |
| TscAI | CASTG | 5 cut(s) | 332, 1481, 1488, 1566, 1598 |
| TseFI | GTSAC | 1 cut(s) | 495 |
| TseI | GCWGC | 7 cut(s) | 413, 416, 777, 943, 1154, 1406, 1552 |
| Tsp45I | GTSAC | 1 cut(s) | 495 |
| TspDTI | ATGAA | 5 cut(s) | 186, 210, 216, 1074, 1436 |
| TspRI | CASTG | 5 cut(s) | 332, 1481, 1488, 1566, 1598 |
| VneI | GTGCAC | 1 cut(s) | 739 |
| VpaK11BI | GGWCC | 1 cut(s) | 109 |
| XapI | RAATTY | 3 cut(s) | 176, 234, 609 |
| XceI | RCATGY | 2 cut(s) | 1154, 1354 |
| XmiI | GTMKAC | 1 cut(s) | 1602 |
| XmnI | GAANNNNTTC | 1 cut(s) | 238 |
| XspI | CTAG | 1 cut(s) | 296 |
| ZrmI | AGTACT | 1 cut(s) | 469 |