Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009208

Physical Location & Seq

Genomic Coordinates Reverse (-)

11267047 .. 11270466

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1152100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCGGAGCACCACGAGAGCTCCGATGCTCTCCCAACGGAGAAACTACACCCAAGGAAAGGAGAACAAGAAGAAGGCGGCAGCGGAGACGAAGACGATGACGAAGAACGAAAACAACGACTCGGTGAATTTCAACCCGGCGAGTTAAAGAGTTCTGTATCCGAGTTGAGGCAAACACAATTAAAAACCCTAATGGAGCCTTCGACGCAGGAATTTTCAGAGAAGGATCAGTTTGCAGGTTTGCAGCTTGAGTCCGTGTCACAGTCGATTGATGGAGCTGAATTGCAGGAGCAACTTGGGCTGAGCCACCAGGAAATTTTGGCAAGTGTAACAAACCAAGATGTTCAGATTCAGAAGCAAAGTCAGTCTCAGTTGACTGTTTATCCAACTCCGTTTTCAGAACTATCTCCAACTTCTGTCACTCAATCCATTTCATCTGCTCCAAGCCCAATTCTAATAGAACGAAGAGTTCCTCATGGAAAGACATCTGCTTCAGATGGTTACAACTGGCGGAAATACGGTCAGAAGCAAGTAAAGAGCCCTCAAGGTTCTCGAAGCTATTATAGGTGCACATATTCTGAGTGTTATGCCAAGAAAATAGAATGCTGTGATCACTCAGGCCATGTAACAGATATTGTTTACAAAAGCCAACATACTCATGATCCCCCTCGGAAAAGTATCTGCATAAAGGAAAGTAAGCTTGCACTATCTGCTGAGTGTGTAAGATATAGTGTTGCTCCTGCAGAACATTCCTACCGAACGGTTAATGATTCAGAGGTGTCCACATCTTCAAAAGAACCTATTCAAGAAACACCCTCAGTTCCTGAAAGAAAACGGCAGAGCGCAAGTGACTCTGATGATAATGGCGATGTAAAAATCAAGGAGGAGAATGGTGATGGTGATGAGCCAGAACCAAAACGAAGAATGAAGAAAAGCAAATCAGAATATTCTGCTTCTCTCTCAAAACCTGGCAAGAAACCTAAATTTGTTGTGCATGCGGCTGGGGATGTTGGAATATCAGGTGATGGATACAGATGGCGCAAATATGGACAGAAGATGGTGAAAGGAAACCCTCATCCCAGGAACTACTACAGATGTACTTCTGCTGGGTGTCCAGTTCGGAAACACATTGAAACAGCCGTAGATAACACAAGTGCTGTAATTATAACATACAAGGGGGTACATGACCATGACATGCCTGTCCCAAAGAAGCGACATGGCCCTCCGAGCGCTCCTCTTGTTGCTGCTGCCGCTCCTGCTTCCATGAACATGGTCGGTGGACACAGGAGGAGAATTGACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

435

Amino Acids

48.12

Weight (kDa)

7.27

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 221	7.5e-18	WRKY DNA -binding domain
WRKY	PF03106	342 - 398	8.7e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30935
fragaria_vesca	FvH4_1g00960 FvH4_1g00960
malus_domestica	MD02G1007900.v1.1 MD15G1152100.v1.1
prunus_persica	Prupe.7G262600_v2.0.a1
pyrus_communis	pycom02g00680 pycom02g00690 pycom15g13670
rosa_chinensis	RchiOBHm_Chr2g0085691
rosa_laevigata	RLG00000015712
rosa_multiflora	Rmu_sc0007631.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155120
rosa_rugosa	Rorug01G0462300 Rorug01G0462400 Rorug01G0462500 Rorug01G0462600
rosa_samantha	Rh2AG011500 Rh2BG012000 Rh2CG012800 Rh2DG013900
rosa_wichuraiana	Rw2G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AasI	GACNNNNNNGTC	1 cut(s)	1199
Acc36I	ACCTGC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	1253
AciI	CCGC	6 cut(s)	5, 78, 84, 511, 998, 1251
AclWI	GGATC	2 cut(s)	234, 656
AcsI	RAATTY	4 cut(s)	128, 212, 315, 983
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	1099, 1182
AfeI	AGCGCT	1 cut(s)	1231
AfiI	CCNNNNNNNGG	2 cut(s)	59, 168
AgsI	TTSAA	4 cut(s)	134, 792, 806, 1133
AjnI	CCWGG	3 cut(s)	309, 967, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	5 cut(s)	21, 247, 278, 558, 700
AluI	AGCT	5 cut(s)	21, 247, 278, 558, 700
Alw21I	GWGCWC	3 cut(s)	12, 23, 572
Alw26I	GTCTC	2 cut(s)	81, 372
Alw44I	GTGCAC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	234, 656
AlwNI	CAGNNNCTG	1 cut(s)	824
Aor51HI	AGCGCT	1 cut(s)	1231
AoxI	GGCC	2 cut(s)	619, 1219
ApaLI	GTGCAC	1 cut(s)	568
ApeKI	GCWGC	4 cut(s)	81, 244, 1244, 1247
ApoI	RAATTY	4 cut(s)	128, 212, 315, 983
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	3 cut(s)	845, 1041, 1232
AspS9I	GGNCC	1 cut(s)	1220
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	137, 905, 911, 1034, 1072
BaeGI	GKGCMC	1 cut(s)	572
BanII	GRGCYC	2 cut(s)	23, 542
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	3 cut(s)	12, 23, 572
BbvI	GCAGC	4 cut(s)	93, 256, 1231, 1234
BccI	CCATC	6 cut(s)	266, 491, 890, 1019, 1029, 1051
BceAI	ACGGC	2 cut(s)	851, 1124
BciT130I	CCWGG	3 cut(s)	311, 969, 1081
BciVI	GTATCC	2 cut(s)	169, 1022
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	81, 372
BfmI	CTRYAG	2 cut(s)	741, 1090
BfoI	RGCGCY	1 cut(s)	1233
BfuAI	ACCTGC	1 cut(s)	227
BfuI	GTATCC	2 cut(s)	169, 1022
BisI	GCNGC	7 cut(s)	79, 82, 245, 999, 1245, 1248, 1251
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	7 cut(s)	80, 83, 246, 1000, 1246, 1249, 1252
Bme1390I	CCNGG	4 cut(s)	138, 311, 969, 1081
BmgT120I	GGNCC	1 cut(s)	1220
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	4 cut(s)	138, 311, 969, 1081
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	1219, 1251
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	269, 528
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	53, 668, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 168
Bse1I	ACTGG	2 cut(s)	512, 1115
BseBI	CCWGG	3 cut(s)	311, 969, 1081
BseDI	CCNNGG	3 cut(s)	53, 668, 1079
BseGI	GGATG	2 cut(s)	1012, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	59, 168
BseMII	CTCAG	6 cut(s)	293, 383, 570, 630, 705, 831
BseNI	ACTGG	2 cut(s)	512, 1115
BseRI	GAGGAG	3 cut(s)	899, 1224, 1303
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	4 cut(s)	93, 256, 1231, 1234
BseYI	CCCAGC	2 cut(s)	1001, 1106
BshFI	GGCC	2 cut(s)	621, 1221
BsiHKAI	GWGCWC	3 cut(s)	12, 23, 572
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	1187
BslI	CCNNNNNNNGG	2 cut(s)	59, 168
BsmAI	GTCTC	2 cut(s)	81, 372
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	1187
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	621, 1221
Bsp1286I	GDGCHC	4 cut(s)	12, 23, 542, 572
Bsp143I	GATC	3 cut(s)	226, 610, 661
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	6 cut(s)	5, 78, 84, 511, 998, 1251
BspANI	GGCC	2 cut(s)	621, 1221
BspCNI	CTCAG	6 cut(s)	294, 382, 571, 629, 706, 830
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	234, 656
BsrBI	CCGCTC	1 cut(s)	1253
BsrI	ACTGG	2 cut(s)	512, 1115
BssECI	CCNNGG	3 cut(s)	53, 668, 1079
BssMI	GATC	3 cut(s)	226, 610, 661
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	311, 969, 1081
Bst4CI	ACNGT	4 cut(s)	264, 379, 521, 763
Bst6I	CTCTTC	1 cut(s)	460
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	702, 996
BstDEI	CTNAG	6 cut(s)	302, 369, 579, 616, 714, 817
BstF5I	GGATG	2 cut(s)	1012, 1075
BstH2I	RGCGCY	1 cut(s)	1233
BstHHI	GCGC	3 cut(s)	845, 1041, 1232
BstKTI	GATC	3 cut(s)	229, 613, 664
BstMAI	GTCTC	2 cut(s)	81, 372
BstMBI	GATC	3 cut(s)	226, 610, 661
BstMWI	GCNNNNNNNGC	6 cut(s)	205, 298, 710, 1227, 1250, 1256
BstNI	CCWGG	3 cut(s)	311, 969, 1081
BstNSI	RCATGY	2 cut(s)	998, 1198
BstSCI	CCNGG	4 cut(s)	136, 309, 967, 1079
BstSFI	CTRYAG	2 cut(s)	741, 1090
BstSLI	GKGCMC	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	93, 256, 1231, 1234
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	1270
BsuI	GTATCC	2 cut(s)	169, 1022
BsuRI	GGCC	2 cut(s)	621, 1221
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	1012, 1075
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	702, 996
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	3 cut(s)	845, 1041, 1232
Cfr13I	GGNCC	1 cut(s)	1220
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	1098, 1181
CviQI	GTAC	2 cut(s)	1098, 1181
DdeI	CTNAG	6 cut(s)	302, 369, 579, 616, 714, 817
DpnI	GATC	3 cut(s)	228, 612, 663
DpnII	GATC	3 cut(s)	226, 610, 661
DrdI	GACNNNNNNGTC	1 cut(s)	1199
DseDI	GACNNNNNNGTC	1 cut(s)	1199
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	2 cut(s)	20, 526
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	23, 542
Eco47III	AGCGCT	1 cut(s)	1231
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	3 cut(s)	309, 967, 1079
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	2 cut(s)	23, 542
ErhI	CCWWGG	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	81
FaqI	GGGAC	1 cut(s)	1187
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	7 cut(s)	79, 82, 245, 999, 1245, 1248, 1251
FokI	GGATG	2 cut(s)	1019, 1062
FriOI	GRGCYC	2 cut(s)	23, 542
Fsp4HI	GCNGC	7 cut(s)	79, 82, 245, 999, 1245, 1248, 1251
GlaI	GCGC	3 cut(s)	844, 1040, 1231
GluI	GCNGC	7 cut(s)	79, 82, 245, 999, 1245, 1248, 1251
GsaI	CCCAGC	2 cut(s)	1005, 1110
HaeII	RGCGCY	1 cut(s)	1233
HaeIII	GGCC	2 cut(s)	621, 1221
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	845, 1041, 1232
Hin6I	GCGC	3 cut(s)	843, 1039, 1230
HinP1I	GCGC	3 cut(s)	843, 1039, 1230
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	120, 251, 349, 770, 851
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	5 cut(s)	137, 905, 911, 1034, 1072
Hpy166II	GTNNAC	5 cut(s)	375, 570, 640, 783, 1280
Hpy188III	TCNNGA	4 cut(s)	552, 659, 806, 824
Hpy8I	GTNNAC	5 cut(s)	375, 570, 640, 783, 1280
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	68, 210, 217
HpyCH4III	ACNGT	4 cut(s)	264, 379, 521, 763
HpyCH4V	TGCA	8 cut(s)	236, 244, 286, 570, 684, 704, 743, 994
HpyF10VI	GCNNNNNNNGC	6 cut(s)	205, 298, 710, 1227, 1250, 1256
HpyF3I	CTNAG	6 cut(s)	302, 369, 579, 616, 714, 817
HspAI	GCGC	3 cut(s)	843, 1039, 1230
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	226, 610, 661
LmnI	GCTCC	9 cut(s)	7, 26, 196, 275, 289, 445, 742, 1237, 1258
Lsp1109I	GCAGC	4 cut(s)	93, 256, 1231, 1234
LweI	GCATC	1 cut(s)	16
MaeIII	GTNAC	6 cut(s)	258, 328, 418, 500, 625, 848
MalI	GATC	3 cut(s)	228, 612, 663
MbiI	CCGCTC	1 cut(s)	1253
MboI	GATC	3 cut(s)	226, 610, 661
MboII	GAAGA	8 cut(s)	83, 104, 116, 477, 780, 933, 940, 1066
MhlI	GDGCHC	4 cut(s)	12, 23, 542, 572
MluCI	AATT	9 cut(s)	128, 179, 212, 281, 315, 450, 983, 1161, 1293
MlyI	GAGTC	3 cut(s)	114, 260, 845
MmeI	TCCRAC	3 cut(s)	410, 434, 991
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	3 cut(s)	146, 182, 765
MslI	CAYNNNNRTG	3 cut(s)	657, 1188, 1268
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	4 cut(s)	138, 311, 969, 1081
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	3 cut(s)	311, 969, 1081
MwoI	GCNNNNNNNGC	6 cut(s)	205, 298, 710, 1227, 1250, 1256
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	226, 610, 661
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	3 cut(s)	258, 418, 848
NspI	RCATGY	2 cut(s)	998, 1198
PaeI	GCATGC	1 cut(s)	998
PagI	TCATGA	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 115
PctI	GAATGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	349, 770
PkrI	GCNGC	7 cut(s)	80, 83, 246, 1000, 1246, 1249, 1252
PleI	GAGTC	3 cut(s)	114, 259, 845
PpsI	GAGTC	3 cut(s)	114, 259, 845
PsiI	TTATAA	1 cut(s)	1166
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	309, 967, 1079
PspFI	CCCAGC	2 cut(s)	1001, 1106
PspGI	CCWGG	3 cut(s)	309, 967, 1079
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	1220
PstI	CTGCAG	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	1099, 1182
RsaNI	GTAC	2 cut(s)	1098, 1181
RseI	CAYNNNNRTG	3 cut(s)	657, 1188, 1268
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	146, 182, 765
SatI	GCNGC	7 cut(s)	79, 82, 245, 999, 1245, 1248, 1251
Sau3AI	GATC	3 cut(s)	226, 610, 661
Sau96I	GGNCC	1 cut(s)	1220
SchI	GAGTC	3 cut(s)	114, 260, 845
ScrFI	CCNGG	4 cut(s)	138, 311, 969, 1081
SduI	GDGCHC	4 cut(s)	12, 23, 542, 572
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	741, 1090
SmiMI	CAYNNNNRTG	3 cut(s)	657, 1188, 1268
SmlI	CTYRAG	2 cut(s)	248, 543
SmoI	CTYRAG	2 cut(s)	248, 543
SphI	GCATGC	1 cut(s)	998
Sse9I	AATT	9 cut(s)	128, 179, 212, 281, 315, 450, 983, 1161, 1293
SsiI	CCGC	6 cut(s)	5, 78, 84, 511, 998, 1251
SspI	AATATT	1 cut(s)	947
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	4 cut(s)	136, 309, 967, 1079
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	4 cut(s)	264, 379, 521, 763
TaqI	TCGA	3 cut(s)	203, 266, 553
TasI	AATT	9 cut(s)	128, 179, 212, 281, 315, 450, 983, 1161, 1293
TatI	WGTACW	1 cut(s)	1097
TauI	GCSGC	3 cut(s)	81, 1001, 1253
TfiI	GAWTC	2 cut(s)	349, 770
Tru1I	TTAA	3 cut(s)	146, 182, 765
Tru9I	TTAA	3 cut(s)	146, 182, 765
TseFI	GTSAC	3 cut(s)	258, 418, 848
TseI	GCWGC	4 cut(s)	81, 244, 1244, 1247
Tsp45I	GTSAC	3 cut(s)	258, 418, 848
TspDTI	ATGAA	3 cut(s)	423, 941, 1280
TspGWI	ACGGA	3 cut(s)	53, 244, 381
VneI	GTGCAC	1 cut(s)	568
XapI	RAATTY	4 cut(s)	128, 212, 315, 983
XceI	RCATGY	2 cut(s)	998, 1198
XmnI	GAANNNNTTC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.