Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Forward (+)

1501609 .. 1502368

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1021400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTGGAGATGGAGGGATCAATGAAGGACTGGCTGCGGGGGTATAGAGATCCACAACCAGATTATTCTGCATTCCGAGAAGCAAGCTATGGCCATTCCACGCTCGAGCTTATGAACAGGACACACGCACTCTACCACTGGAACCGCAATGATGAAGGGAAGAAAACTGCAGCGGACGCATTTGTATTGCACAACCAGTATTGGCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

71

Amino Acids

8.34

Weight (kDa)

6.02

Isoelectric Point (pI)

14.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_C	PF14008	14 - 54	5.2e-12	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	37, 145, 173
AclWI	GGATC	2 cut(s)	25, 44
AcoI	YGGCCR	1 cut(s)	91
AluBI	AGCT	2 cut(s)	87, 109
AluI	AGCT	2 cut(s)	87, 109
AlwI	GGATC	2 cut(s)	25, 44
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	34, 170
AvaI	CYCGRG	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	21, 182
BccI	CCATC	1 cut(s)	4
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	35, 171
BlsI	GCNGC	2 cut(s)	36, 172
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	35, 143, 196
Bse3DI	GCAATG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	154
BseNI	ACTGG	3 cut(s)	35, 143, 196
BseXI	GCAGC	2 cut(s)	21, 182
BshFI	GGCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	17, 49
BspACI	CCGC	3 cut(s)	37, 145, 173
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	25, 44
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	35, 143, 196
BssMI	GATC	2 cut(s)	17, 49
BstC8I	GCNNGC	2 cut(s)	85, 207
BstKTI	GATC	2 cut(s)	20, 52
BstMBI	GATC	2 cut(s)	17, 49
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	21, 182
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	85, 207
CseI	GACGC	1 cut(s)	185
CviJI	RGCY	4 cut(s)	34, 87, 93, 109
CviKI_1	RGCY	4 cut(s)	34, 87, 93, 109
DpnI	GATC	2 cut(s)	19, 51
DpnII	GATC	2 cut(s)	17, 49
EaeI	YGGCCR	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	104
FaiI	YATR	4 cut(s)	45, 90, 113, 211
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	35, 171
Fsp4HI	GCNGC	2 cut(s)	35, 171
GluI	GCNGC	2 cut(s)	35, 171
HaeIII	GGCC	1 cut(s)	93
HgaI	GACGC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	19, 149
HpyCH4V	TGCA	3 cut(s)	71, 170, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	17, 49
LpnPI	CCDG	5 cut(s)	16, 72, 103, 124, 209
Lsp1109I	GCAGC	2 cut(s)	21, 182
MalI	GATC	2 cut(s)	19, 51
MboI	GATC	2 cut(s)	17, 49
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	93
MnlI	CCTC	1 cut(s)	7
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	17, 49
NlaIV	GGNNCC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	36, 172
PspN4I	GGNNCC	1 cut(s)	143
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	49
SatI	GCNGC	2 cut(s)	35, 171
Sau3AI	GATC	2 cut(s)	17, 49
SetI	ASST	2 cut(s)	89, 111
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	3 cut(s)	37, 145, 173
TaqI	TCGA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	2 cut(s)	34, 170
TspDTI	ATGAA	3 cut(s)	38, 128, 168
TspRI	CASTG	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.