Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Reverse (-)

41829125 .. 41837809

Gene Structure 8685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGGTCTCGACATCTCCGGGAAGGTTGCCTTTGCCGCTATCTACAATAACTACGACCGGTACTACATCGGCAAGTGCTCGATTGCCAAGATTCGCGGGACCAAGGCTCCATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTTGTGATTATGATCGTCTACAATTATCAACTAGTCCATTTCTAGAGAGGAATATGGAACTTCTTATTGAGTGCATGGATGATTTGTCAATGGAACAGCAGAAGCTGCGCATTGAAGTGGTTGATTATATGCAGAGTTTGGCAAAACTTGTCACTAGCTATTACCATAACTTCATGGCTTCTCTTGCTACCCTTATGAAGCCATGGTGTAGAGATGGTGGTCTAGATACCGGAGATGTGTGTGCCTCCTCTTTGTGCGAGCCTACATGTGAAGAATGGGGGATGAAGAAGAGAAGAGGAGATGAGAAGGGAGAGAAGTCCCAAATTCGGCCAAAAGGCCTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

164

Amino Acids

18.64

Weight (kDa)

5.93

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	39, 99
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	471
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	413
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	122, 263
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	2 cut(s)	253, 306
AluI	AGCT	2 cut(s)	253, 306
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	476, 484
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	471
AsiGI	ACCGGT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	126
AspA2I	CCTAGG	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	5 cut(s)	180, 191, 303, 371, 488
BisI	GCNGC	2 cut(s)	39, 254
BlnI	CCTAGG	1 cut(s)	487
BlsI	GCNGC	2 cut(s)	40, 255
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	103, 111, 129
BmrFI	CCNGG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	105, 350, 487
BsaWI	WCCGGW	2 cut(s)	60, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	105, 350, 487
BseGI	GGATG	2 cut(s)	232, 435
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	385, 459
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	478, 486
BshTI	ACCGGT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	21, 61, 378
BslFI	GGGAC	2 cut(s)	115, 451
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	115, 451
BsnI	GGCC	2 cut(s)	478, 486
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	2 cut(s)	39, 99
BspANI	GGCC	2 cut(s)	478, 486
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	103, 111, 129
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	105, 350, 487
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	3 cut(s)	105, 350, 487
Bst6I	CTCTTC	3 cut(s)	117, 431, 436
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	232, 435
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 253, 332
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	478, 486
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	232, 435
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	4 cut(s)	223, 322, 351, 414
CviJI	RGCY	9 cut(s)	110, 149, 253, 306, 326, 349, 409, 478, 486
CviKI_1	RGCY	9 cut(s)	110, 149, 253, 306, 326, 349, 409, 478, 486
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	3 cut(s)	117, 431, 436
EarI	CTCTTC	3 cut(s)	117, 431, 436
Eco130I	CCWWGG	3 cut(s)	105, 350, 487
Eco147I	AGGCCT	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	102
EcoT14I	CCWWGG	3 cut(s)	105, 350, 487
ErhI	CCWWGG	3 cut(s)	105, 350, 487
FaeI	CATG	4 cut(s)	226, 325, 354, 417
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	2 cut(s)	115, 451
FatI	CATG	4 cut(s)	222, 321, 350, 413
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	39, 254
FokI	GGATG	2 cut(s)	239, 442
Fsp4HI	GCNGC	2 cut(s)	39, 254
FspBI	CTAG	5 cut(s)	180, 191, 303, 371, 488
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	39, 254
HaeIII	GGCC	2 cut(s)	478, 486
HapII	CCGG	3 cut(s)	21, 61, 378
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	226, 325, 354, 417
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	3 cut(s)	21, 61, 378
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188III	TCNNGA	3 cut(s)	11, 191, 371
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	19, 448
HpyCH4V	TGCA	3 cut(s)	139, 222, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 253, 332
Hsp92II	CATG	4 cut(s)	226, 325, 354, 417
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	34, 74, 391
Lsp1109I	GCAGC	1 cut(s)	240
MaeI	CTAG	5 cut(s)	180, 191, 303, 371, 488
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	5 cut(s)	134, 431, 445, 448, 453
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	170, 471
MnlI	CCTC	5 cut(s)	118, 189, 403, 406, 437
MroXI	GAANNNNTTC	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	3 cut(s)	21, 61, 378
MspR9I	CCNGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	38, 253, 332
NciI	CCSGG	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	226, 325, 354, 417
NlaIV	GGNNCC	3 cut(s)	103, 111, 129
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	257
NspI	RCATGY	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	486
PciI	ACATGT	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	40, 255
PscI	ACATGT	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	103, 111, 129
PspPI	GGNCC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	263
SatI	GCNGC	2 cut(s)	39, 254
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	5 cut(s)	10, 30, 129, 255, 308
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	2 cut(s)	170, 471
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	39, 99
SspMI	CTAG	5 cut(s)	180, 191, 303, 371, 488
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	3 cut(s)	105, 350, 487
TaqI	TCGA	2 cut(s)	12, 83
TasI	AATT	2 cut(s)	170, 471
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	310, 359, 446
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	471
XbaI	TCTAGA	2 cut(s)	190, 370
XceI	RCATGY	1 cut(s)	417
XmaJI	CCTAGG	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	5 cut(s)	180, 191, 303, 371, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.