Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Forward (+)

21845797 .. 21850346

Gene Structure 4550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAACTCAGGCATCCAGCCGCGGCGAGAAGATCTTCGATCAGACAGCTTGACCATTGGATTGATTTCTTGGCAATCGAAGAAGTAGGAGGTGAGAGTCGGTTTGTTCATTACAGAGTTGATGTAGTGTTTGCTGGCCATGTCCATGCATATGAAAGATCATATAGAATCTCAAATATACACTACAACGTAACAAGTGGTTACCAGTACCCCATACCAGACAAGTCGGCTCCTGTCTACATAACTGTTGAAGATGGAGGGAACCAAGAAGGTCTTGCTGGAAGGTTTAGAGATCCACAACCAGAATATTCTGCATTCCGAGAAGCGAGATATGGGCATTCGACACTGGAGATTCATAACCGGACACATGCACTTTACCACTGGAACCGCAATGATGACGGGAAGAAAATGGCAACTTACGCATTTGTATTGCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

146

Amino Acids

16.99

Weight (kDa)

7.21

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_C	PF14008	77 - 135	5.9e-19	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	21, 23, 388
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	136
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	138
BccI	CCATC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	439
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	21, 24
BlsI	GCNGC	2 cut(s)	22, 25
BmiI	GGNNCC	3 cut(s)	231, 263, 386
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	360
Bse1I	ACTGG	3 cut(s)	205, 351, 386
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	3 cut(s)	205, 351, 386
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	361
BsmI	GAATGC	2 cut(s)	314, 337
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	32, 39, 158, 292
BspACI	CCGC	3 cut(s)	21, 23, 388
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	231, 263, 386
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	205, 351, 386
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	32, 39, 158, 292
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	4 cut(s)	35, 42, 161, 295
BstMBI	GATC	4 cut(s)	32, 39, 158, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 419
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	200
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	32, 292
BstYI	RGATCY	2 cut(s)	32, 292
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	344, 379
Cac8I	GCNNGC	1 cut(s)	136
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	140, 146, 368
CviJI	RGCY	4 cut(s)	20, 49, 138, 230
CviKI_1	RGCY	4 cut(s)	20, 49, 138, 230
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	4 cut(s)	34, 41, 160, 294
DpnII	GATC	4 cut(s)	32, 39, 158, 292
EaeI	YGGCCR	1 cut(s)	136
Eco91I	GGTNACC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	3 cut(s)	143, 149, 371
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	3 cut(s)	139, 145, 367
FauNDI	CATATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	21, 24
Fsp4HI	GCNGC	2 cut(s)	21, 24
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	2 cut(s)	21, 24
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	3 cut(s)	143, 149, 371
HinfI	GANTC	3 cut(s)	97, 168, 352
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	44, 320
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	263, 276
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	5 cut(s)	4, 149, 314, 371, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 419
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	143, 149, 371
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	32, 39, 158, 292
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	439
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	190, 200
MalI	GATC	4 cut(s)	34, 41, 160, 294
MboI	GATC	4 cut(s)	32, 39, 158, 292
MboII	GAAGA	5 cut(s)	27, 42, 92, 263, 415
MflI	RGATCY	2 cut(s)	32, 292
MlsI	TGGCCA	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	83, 251
Mox20I	TGGCCA	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	144, 150
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	1 cut(s)	361
Mva1269I	GAATGC	2 cut(s)	314, 337
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	10, 419
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	4 cut(s)	32, 39, 158, 292
NlaIII	CATG	3 cut(s)	143, 149, 371
NlaIV	GGNNCC	3 cut(s)	231, 263, 386
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	371
PctI	GAATGC	2 cut(s)	314, 337
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	168, 352
PkrI	GCNGC	2 cut(s)	22, 25
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	200
PspN4I	GGNNCC	3 cut(s)	231, 263, 386
PsuI	RGATCY	2 cut(s)	32, 292
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	144, 150
SacII	CCGCGG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	21, 24
Sau3AI	GATC	4 cut(s)	32, 39, 158, 292
SchI	GAGTC	1 cut(s)	106
SetI	ASST	5 cut(s)	51, 94, 192, 274, 287
SfaNI	GCATC	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	144, 150
SsiI	CCGC	3 cut(s)	21, 23, 388
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	38, 78, 341
TauI	GCSGC	2 cut(s)	23, 26
TfiI	GAWTC	2 cut(s)	168, 352
TscAI	CASTG	2 cut(s)	351, 386
TspDTI	ATGAA	3 cut(s)	98, 168, 344
TspRI	CASTG	2 cut(s)	351, 386
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.