Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Forward (+)

10515848 .. 10529611

Gene Structure 13764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCCGACGTCGCCACCCTGTCGTGTGCTCGTTGCAGCAAATCCGCCAATCTTCAGTGTCCCAAGTATGTGGAATTGAAGCTTCCTCATGAAGATGCCGCTTTCTGGGGGTTCTCAACTGTTCATGCTATTGCGGTAGCAGTTGCATGTTTTTACCTTATACTCTTATCAGATACATTTCATGAGGGTTATAGTGATGAGCTGATCGTTAGTAGAAGATCCACTTTTTCATATACAACATTGGGGATGTCCATTGGTTATTTTCTGGCAGACATAACAATGATTTTTTGGCATTTTCTTGCCTTAGGTGGACTGGAGTATATTTACATACTACTGGTTCTGTTCTCTGAGAGCACAACTCCTTTTGTAAACCTAAGATGGTACTTGGATATTGCTGGTAAGAAGAACTCTAAGCTGTACGTCTGCAATGGTGTAGCATTGTTCCTGGGGTGGCTGGTTGCAAGGATTCTTTTGTTCATTTACTTTTTCGTCCACATGTTTTTCCATTTTCATCAAAGAGTAGAAGACAAGGGGAGGGATTATGGAAAATACATCAGATCAGGGGAGCATGTATGGTCCGTGAGAGAGACTGGATCAGCTGAGAGCCAACGTGGAACAATTGTGTTCCTTCACGGGGCTCCCACTCAGTCTTATAGCTACAGAAATGTTATGTCTCAGGAACATGAATTGGGTGAATTGGGTTCTCTTGTGGATGACATTTTGCACCAGCTATCAAGCCTACCACAGGTTCGAATCCAGCATGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

256

Amino Acids

29.19

Weight (kDa)

6.63

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	104 - 177	2.6e-10	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AciI	CCGC	3 cut(s)	45, 99, 134
AclWI	GGATC	2 cut(s)	213, 601
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	383, 419
AfiI	CCNNNNNNNGG	3 cut(s)	105, 634, 745
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	6 cut(s)	82, 202, 415, 599, 657, 730
AluI	AGCT	6 cut(s)	82, 202, 415, 599, 657, 730
Alw21I	GWGCWC	2 cut(s)	31, 356
Alw26I	GTCTC	2 cut(s)	581, 678
AlwI	GGATC	2 cut(s)	213, 601
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	704
AsuII	TTCGAA	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	31, 356
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	581, 678
BfmI	CTRYAG	1 cut(s)	658
BisI	GCNGC	2 cut(s)	37, 99
BlsI	GCNGC	2 cut(s)	38, 100
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	531
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 634, 745
Bse1I	ACTGG	3 cut(s)	318, 339, 595
Bse21I	CCTNAGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	2 cut(s)	252, 718
BseLI	CCNNNNNNNGG	3 cut(s)	105, 634, 745
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	4 cut(s)	339, 591, 659, 689
BseNI	ACTGG	3 cut(s)	318, 339, 595
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	31, 356
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	105, 634, 745
BsmAI	GTCTC	2 cut(s)	581, 678
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	3 cut(s)	31, 356, 640
Bsp143I	GATC	4 cut(s)	204, 218, 557, 593
BspACI	CCGC	3 cut(s)	45, 99, 134
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	340, 592, 658, 688
BspHI	TCATGA	2 cut(s)	88, 181
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	213, 601
BspT104I	TTCGAA	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	3 cut(s)	318, 339, 595
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	204, 218, 557, 593
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	7 cut(s)	304, 348, 374, 411, 600, 645, 675
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	252, 718
BstKTI	GATC	4 cut(s)	207, 221, 560, 596
BstMAI	GTCTC	2 cut(s)	581, 678
BstMBI	GATC	4 cut(s)	204, 218, 557, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	4 cut(s)	150, 499, 572, 764
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	658
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	252, 718
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	762
CciI	TCATGA	2 cut(s)	88, 181
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	382, 418
CviAII	CATG	8 cut(s)	89, 125, 147, 182, 496, 569, 683, 761
CviQI	GTAC	2 cut(s)	382, 418
DdeI	CTNAG	7 cut(s)	304, 348, 374, 411, 600, 645, 675
DpnI	GATC	4 cut(s)	206, 220, 559, 595
DpnII	GATC	4 cut(s)	204, 218, 557, 593
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	640
FaeI	CATG	8 cut(s)	92, 128, 150, 185, 499, 572, 686, 764
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	8 cut(s)	88, 124, 146, 181, 495, 568, 682, 760
Fnu4HI	GCNGC	2 cut(s)	37, 99
FokI	GGATG	2 cut(s)	259, 725
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	2 cut(s)	37, 99
GluI	GCNGC	2 cut(s)	37, 99
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	8 cut(s)	92, 128, 150, 185, 499, 572, 686, 764
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	466, 753
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	3 cut(s)	311, 370, 493
Hpy188I	TCNGA	3 cut(s)	172, 349, 557
Hpy188III	TCNNGA	3 cut(s)	89, 182, 677
Hpy8I	GTNNAC	3 cut(s)	311, 370, 493
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	3 cut(s)	9, 420, 610
HpyCH4V	TGCA	5 cut(s)	36, 146, 426, 461, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	7 cut(s)	304, 348, 374, 411, 600, 645, 675
HpySE526I	ACGT	3 cut(s)	9, 420, 610
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	8 cut(s)	92, 128, 150, 185, 499, 572, 686, 764
Kzo9I	GATC	4 cut(s)	204, 218, 557, 593
LmnI	GCTCC	2 cut(s)	565, 643
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	3 cut(s)	9, 420, 610
MalI	GATC	4 cut(s)	206, 220, 559, 595
MboI	GATC	4 cut(s)	204, 218, 557, 593
MboII	GAAGA	5 cut(s)	44, 104, 228, 415, 536
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	31, 356, 640
MluCI	AATT	4 cut(s)	74, 618, 686, 695
MnlI	CCTC	3 cut(s)	96, 178, 528
MslI	CAYNNNNRTG	2 cut(s)	93, 278
MspA1I	CMGCKG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	204, 218, 557, 593
NlaIII	CATG	8 cut(s)	92, 128, 150, 185, 499, 572, 686, 764
NlaIV	GGNNCC	1 cut(s)	639
NspI	RCATGY	4 cut(s)	150, 499, 572, 764
NspV	TTCGAA	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	764
PagI	TCATGA	2 cut(s)	88, 181
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	466, 753
PkrI	GCNGC	2 cut(s)	38, 100
PscI	ACATGT	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	383, 419
RsaNI	GTAC	2 cut(s)	382, 418
RseI	CAYNNNNRTG	2 cut(s)	93, 278
SatI	GCNGC	2 cut(s)	37, 99
Sau3AI	GATC	4 cut(s)	204, 218, 557, 593
Sau96I	GGNCC	1 cut(s)	576
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	3 cut(s)	31, 356, 640
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	658
SfuI	TTCGAA	1 cut(s)	751
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	93, 278
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	4 cut(s)	74, 618, 686, 695
SsiI	CCGC	3 cut(s)	45, 99, 134
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	3 cut(s)	12, 423, 613
TaqI	TCGA	1 cut(s)	751
TasI	AATT	4 cut(s)	74, 618, 686, 695
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	466, 753
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	36
TspDTI	ATGAA	7 cut(s)	105, 113, 170, 219, 466, 500, 699
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	743
XceI	RCATGY	4 cut(s)	150, 499, 572, 764
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.