Rh3BG373500

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010602
Physical Location & Seq
Forward (+)
47219532 .. 47223215
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG373500.1

Sequence Viewer

Length: 417 bp
ATGCGATCATGGCCGACGTCGCCACCCTGTCGTGTGGTCGTTGCAACAAACCCGCCAATCTTCAGTCTTATTAGCCTTCATAGCTTCAAGGAATATCAGAAATTGAGCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCTGTAGCAGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCATGAGGGTTATAGTGATGAGCTGATCGTTAGTAGAAGATCCACTTTTTCATATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGGACTATCTATGTTCTCAATCTTCCTTTCCCATGTACTTGGATATTGCTGGTAA

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

7.05

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 42 - 137 5.9e-13 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 243, 284
AcoI YGGCCR 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 88, 125
AluBI AGCT 2 cut(s) 84, 232
AluI AGCT 2 cut(s) 84, 232
AlwI GGATC 2 cut(s) 243, 284
AoxI GGCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 137
BcnI CCSGG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 136, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 136, 361
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 348
BshFI GGCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 335
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 5, 234, 248, 276
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 13
BspHI TCATGA 1 cut(s) 211
BspPI GGATC 2 cut(s) 243, 284
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 136, 361
BssMI GATC 4 cut(s) 5, 234, 248, 276
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 361
BstENI CCTNNNNNAGG 1 cut(s) 333
BstKTI GATC 4 cut(s) 8, 237, 251, 279
BstMBI GATC 4 cut(s) 5, 234, 248, 276
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 81, 305
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 248, 276
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 2 cut(s) 248, 276
BsuRI GGCC 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 361
CciI TCATGA 1 cut(s) 211
Csp6I GTAC 1 cut(s) 398
CviAII CATG 5 cut(s) 9, 155, 212, 362, 395
CviJI RGCY 4 cut(s) 13, 75, 84, 232
CviKI_1 RGCY 4 cut(s) 13, 75, 84, 232
CviQI GTAC 1 cut(s) 398
DpnI GATC 4 cut(s) 7, 236, 250, 278
DpnII GATC 4 cut(s) 5, 234, 248, 276
EaeI YGGCCR 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 5 cut(s) 12, 158, 215, 365, 398
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 5 cut(s) 8, 154, 211, 361, 394
FauI CCCGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 5 cut(s) 12, 158, 215, 365, 398
HpaII CCGG 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 99, 202
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 2 cut(s) 19, 22
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 44, 176, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 81, 305
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 5 cut(s) 12, 158, 215, 365, 398
Kzo9I GATC 4 cut(s) 5, 234, 248, 276
LpnPI CCDG 6 cut(s) 40, 149, 281, 329, 342, 397
LweI GCATC 1 cut(s) 185
MaeII ACGT 1 cut(s) 17
MalI GATC 4 cut(s) 7, 236, 250, 278
MboI GATC 4 cut(s) 5, 234, 248, 276
MboII GAAGA 3 cut(s) 52, 258, 376
MflI RGATCY 2 cut(s) 248, 276
MluCI AATT 1 cut(s) 101
MnlI CCTC 1 cut(s) 208
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 81, 305
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 361
NdeII GATC 4 cut(s) 5, 234, 248, 276
NlaIII CATG 5 cut(s) 12, 158, 215, 365, 398
PagI TCATGA 1 cut(s) 211
PsuI RGATCY 2 cut(s) 248, 276
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 308
Sau3AI GATC 4 cut(s) 5, 234, 248, 276
ScrFI CCNGG 1 cut(s) 137
SetI ASST 5 cut(s) 20, 86, 189, 234, 340
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 101
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 397
TspDTI ATGAA 4 cut(s) 68, 143, 200, 249
XagI CCTNNNNNAGG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.