Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0010602

Physical Location & Seq

Genomic Coordinates Forward (+)

27172 .. 28528

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtcaacagcatccctgttagagcctccgcaaggagaactccacgaccagtgcactgagtcatcactgcttttgtctaaaggagaagcacgatccggatcccatcagtccccatcaccaatagcagattgccaaccatctctagacgcctttgaccaaggcgccccaagcgtcaaaacttctccgatcctctcaaccagagaatcactaatctggaaccaatccaacttcaaaacaggctcccgaactccggccctgcacacagccagaagcaagagaccacatatatatagaatctcaaatatacactacaacgtaacaagtggttaccagtaccccataccagacaagtcggctcctgtttacataactgttggagatggagggaaccaagaaggtcttgctggaaggtttagagatccacaaccagaatattctgcattccgagaagcgagctatgggcattcgacactggagattcataaccggacacatgcactttaccactggaatcgcaacgatgacgggaagaaaatggcaactaacgcatttgtattgcataaccagtactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

7.16

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010602)

Species	Orthologous Gene IDs
malus_domestica	MD02G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0147701
rosa_multiflora	Rmu_sc0002539.1_g000114 Rmu_sc0002962.1_g000011 Rmu_sc0012140.1_g000022
rosa_roxburghii	Rroxscaffold_1G00028980 Rroxscaffold_2G00115540 Rroxscaffold_3G00249070 Rroxscaffold_4G00302130 Rroxscaffold_5G00354320 Rroxscaffold_5G00379670 Rroxscaffold_7G00216570
rosa_rugosa	Rorug06G0011500
rosa_samantha	Rh1AG132500 Rh2AG214900 Rh2DG220500 Rh3AG255900 Rh3BG204400 Rh3BG373500 Rh4DG243800 Rh5AG113900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	5 cut(s)	87, 93, 106, 181, 413
AcyI	GRCGYC	2 cut(s)	147, 162
AfaI	GTAC	2 cut(s)	335, 569
AfiI	CCNNNNNNNGG	2 cut(s)	32, 250
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	271
Alw44I	GTGCAC	1 cut(s)	52
AlwI	GGATC	5 cut(s)	87, 93, 106, 181, 413
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	4 cut(s)	111, 121, 145, 374
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	165
BmcAI	AGTACT	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	6 cut(s)	100, 163, 218, 241, 357, 389
BmsI	GCATC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	97
BsaHI	GRCGYC	2 cut(s)	147, 162
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	2 cut(s)	95, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 250
Bse1I	ACTGG	6 cut(s)	49, 331, 477, 512, 565, 575
Bse8I	GATNNNNATC	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	32, 250
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	6 cut(s)	49, 331, 477, 512, 565, 575
BseSI	GKGCMC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	96, 251, 487
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	32, 250
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	2 cut(s)	440, 463
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	92, 98, 186, 418
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	95
BspLI	GGNNCC	6 cut(s)	100, 163, 218, 241, 357, 389
BspPI	GGATC	5 cut(s)	87, 93, 106, 181, 413
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	6 cut(s)	49, 331, 477, 512, 565, 575
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	4 cut(s)	92, 98, 186, 418
BssNI	GRCGYC	2 cut(s)	147, 162
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	2 cut(s)	147, 162
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	4 cut(s)	95, 101, 189, 421
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	4 cut(s)	92, 98, 186, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 545
BstNSI	RCATGY	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	98, 418
BstYI	RGATCY	2 cut(s)	98, 418
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	5 cut(s)	54, 56, 65, 470, 505
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	2 cut(s)	155, 160
Csp6I	GTAC	2 cut(s)	334, 568
CviAII	CATG	1 cut(s)	494
CviJI	RGCY	6 cut(s)	25, 240, 254, 266, 356, 456
CviKI_1	RGCY	6 cut(s)	25, 240, 254, 266, 356, 456
CviQI	GTAC	2 cut(s)	334, 568
DdeI	CTNAG	1 cut(s)	57
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	4 cut(s)	94, 100, 188, 420
DpnII	GATC	4 cut(s)	92, 98, 186, 418
Eco130I	CCWWGG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	157
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	493
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	96, 251, 487
HgaI	GACGC	2 cut(s)	155, 160
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	147, 162
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	59, 203, 294, 478, 511
HpaII	CCGG	3 cut(s)	96, 251, 487
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	3 cut(s)	6, 54, 364
Hpy188I	TCNGA	2 cut(s)	186, 446
Hpy188III	TCNNGA	4 cut(s)	96, 143, 214, 243
Hpy8I	GTNNAC	3 cut(s)	6, 54, 364
HpyAV	CCTTC	2 cut(s)	389, 402
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	5 cut(s)	54, 259, 440, 497, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 545
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	147, 162
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	92, 98, 186, 418
LmnI	GCTCC	2 cut(s)	245, 361
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	316, 326
MalI	GATC	4 cut(s)	94, 100, 188, 420
MboI	GATC	4 cut(s)	92, 98, 186, 418
MboII	GAAGA	1 cut(s)	541
MflI	RGATCY	2 cut(s)	98, 418
MhlI	GDGCHC	1 cut(s)	56
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	249, 355
MnlI	CCTC	3 cut(s)	36, 200, 377
MroI	TCCGGA	1 cut(s)	95
MspI	CCGG	3 cut(s)	96, 251, 487
Mva1269I	GAATGC	2 cut(s)	440, 463
MwoI	GCNNNNNNNGC	2 cut(s)	168, 545
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	4 cut(s)	92, 98, 186, 418
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	6 cut(s)	100, 163, 218, 241, 357, 389
NspI	RCATGY	1 cut(s)	497
PctI	GAATGC	2 cut(s)	440, 463
PfeI	GAWTC	4 cut(s)	203, 294, 478, 511
PleI	GAGTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	326
PspN4I	GGNNCC	6 cut(s)	100, 163, 218, 241, 357, 389
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	98, 418
RsaI	GTAC	2 cut(s)	335, 569
RsaNI	GTAC	2 cut(s)	334, 568
Sau3AI	GATC	4 cut(s)	92, 98, 186, 418
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	318, 400, 413, 458
SfaNI	GCATC	1 cut(s)	20
SfoI	GGCGCC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	29
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	434
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	203, 294, 478, 511
TscAI	CASTG	5 cut(s)	56, 61, 72, 477, 512
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	5 cut(s)	56, 61, 72, 477, 512
VneI	GTGCAC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.