Rroxscaffold_5G00354320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010602
Physical Location & Seq
Reverse (-)
32762002 .. 32780051
18050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354320.1

Sequence Viewer

Length: 915 bp
ATGAAAGTCAAGTCAAAGCTTGTCATTAGCTATTGCCATAACTTCATGACTTCTCTTGCTACCCTTATGAAGCCATGGTGTAGATATGGTATTCTTGATACTGGAGATGTGTGTGCCTCCTCCTTATGTAAGCTTACACGTGAAGAATGGGAAATGAAGAAGAGGAGAAGAGGTAAGAAGGGAGAGTGCTCCCCAAATTTGGCCAAAAGGCCTAGGGACTGTTTCAAAGACTTTGGGTGGTCTCGGATGATGTTTCGCCCTCGACTAGCGTTGTTTCGGTGGATTTCTCCGGTACTTCACACGAATGCTATACCGCCGGGGGACGAGTCTAGTTTTGATTGGTCTGCCGATTTCTTGCATGCCCGGATTGCAGATTTTGATGGTTTGATCTTCAAATCTCAAGGTCATGACAATGATTCCGTTGTTGGAGGATGGCAACTTAGTCTCCAAGTCTTCAAGATTGATCCACACAGCATTAGCCAATCAGATAATTCCACATCAGCTTTGCTACGCGTCGCCGAGGCGAGCCGGGGCGCGCTCCGGTGTGAGGCGACCAGAAAAAGCCTCGCTAGATCAAACTCGGACGTGCTGCTGGAAAAGCGGTCGCCCAGGCGATGGAGCGTCGCTTTTTGTAGAAGCGGCGCCTCAGGCGGCAGTGCGAGGAAGAAGAAGACGCGAGGATTGAGAAGCAAACTTTTTCTCTCTTCTTCTTCGTCGTCGGCGACCTCCGACAAGTCGCAGGTCACTCTGGTCTCTGTGGCTTCTAGCGAAGGAAGGCGAGAAGAGTTCCACACCGAAACGATGACGGATGAGGCGTCGGGGAATCTGGAAGACCATTGTGAGGTCGAAGATGGCTTGGATTTACGACCAGCAGAGGAATGTCTCGGCTCAGTTGCTGCGTCTCTTTTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

33.87

Weight (kDa)

9.18

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 615
AccII CGCG 3 cut(s) 513, 536, 676
AciI CCGC 4 cut(s) 314, 601, 639, 651
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 196
AcvI CACGTG 1 cut(s) 140
AcyI GRCGYC 2 cut(s) 642, 815
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 4 cut(s) 199, 547, 615, 841
AflIII ACRYGT 2 cut(s) 137, 511
AgsI TTSAA 3 cut(s) 226, 394, 457
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 4 cut(s) 19, 30, 133, 503
AluI AGCT 4 cut(s) 19, 30, 133, 503
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 5 cut(s) 246, 449, 757, 887, 906
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 1 cut(s) 896
AoxI GGCC 2 cut(s) 201, 209
ApeKI GCWGC 2 cut(s) 589, 896
ApoI RAATTY 1 cut(s) 196
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 3 cut(s) 536, 538, 644
AsuC2I CCSGG 3 cut(s) 318, 364, 530
AvrII CCTAGG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 646
BalI TGGCCA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 140
BbsI GAAGAC 3 cut(s) 445, 677, 837
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 576, 883
BccI CCATC 4 cut(s) 374, 426, 609, 845
BciT130I CCWGG 1 cut(s) 610
BcnI CCSGG 3 cut(s) 318, 364, 530
BcoDI GTCTC 5 cut(s) 246, 449, 757, 887, 906
BfaI CTAG 5 cut(s) 213, 266, 330, 570, 765
BfoI RGCGCY 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 730
BisI GCNGC 4 cut(s) 590, 640, 652, 897
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 4 cut(s) 591, 641, 653, 898
Bme1390I CCNGG 4 cut(s) 318, 364, 530, 610
BmgBI CACGTC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 4 cut(s) 318, 364, 530, 610
BpiI GAAGAC 3 cut(s) 445, 677, 837
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 3 cut(s) 318, 364, 530
BsaAI YACGTR 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 642, 815
BsaI GGTCTC 2 cut(s) 246, 757
BsaJI CCNNGG 6 cut(s) 74, 212, 317, 519, 529, 608
BsaWI WCCGGW 2 cut(s) 289, 540
BsaXI ACNNNNNCTCC 4 cut(s) 157, 187, 429, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 547, 615, 841
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 646
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 6 cut(s) 74, 212, 317, 519, 529, 608
BseGI GGATG 3 cut(s) 252, 437, 814
BseLI CCNNNNNNNGG 4 cut(s) 199, 547, 615, 841
BseMII CTCAG 2 cut(s) 660, 903
BseNI ACTGG 1 cut(s) 106
BsePI GCGCGC 1 cut(s) 534
BseRI GAGGAG 2 cut(s) 109, 178
BseXI GCAGC 2 cut(s) 576, 883
Bsh1236I CGCG 3 cut(s) 513, 536, 676
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 2 cut(s) 203, 211
BshNI GGYRCC 1 cut(s) 641
BsiEI CGRYCG 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 5 cut(s) 290, 317, 364, 529, 541
BslFI GGGAC 2 cut(s) 230, 335
BslI CCNNNNNNNGG 4 cut(s) 199, 547, 615, 841
BsmAI GTCTC 5 cut(s) 246, 449, 757, 887, 906
BsmBI CGTCTC 1 cut(s) 906
BsmFI GGGAC 2 cut(s) 230, 335
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 203, 211
Bso31I GGTCTC 2 cut(s) 246, 757
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 387, 463, 572
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 4 cut(s) 314, 601, 639, 651
BspANI GGCC 2 cut(s) 203, 211
BspCNI CTCAG 2 cut(s) 659, 902
BspFNI CGCG 3 cut(s) 513, 536, 676
BspHI TCATGA 2 cut(s) 45, 406
BspLI GGNNCC 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 2 cut(s) 246, 757
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 6 cut(s) 74, 212, 317, 519, 529, 608
BssHII GCGCGC 1 cut(s) 534
BssMI GATC 3 cut(s) 387, 463, 572
BssNI GRCGYC 2 cut(s) 642, 815
BssT1I CCWWGG 2 cut(s) 74, 212
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 4 cut(s) 155, 163, 709, 777
BstACI GRCGYC 2 cut(s) 642, 815
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 360, 526, 536
BstDEI CTNAG 3 cut(s) 440, 646, 889
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 3 cut(s) 252, 437, 814
BstFNI CGCG 3 cut(s) 513, 536, 676
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 3 cut(s) 536, 538, 644
BstKTI GATC 3 cut(s) 390, 466, 575
BstMAI GTCTC 5 cut(s) 246, 449, 757, 887, 906
BstMBI GATC 3 cut(s) 387, 463, 572
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 3 cut(s) 368, 598, 648
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 316, 362, 528, 608
BstUI CGCG 3 cut(s) 513, 536, 676
BstV1I GCAGC 2 cut(s) 576, 883
BstV2I GAAGAC 3 cut(s) 445, 677, 837
Bsu36I CCTNAGG 1 cut(s) 646
BsuRI GGCC 2 cut(s) 203, 211
BtgI CCRYGG 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 628
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 252, 437, 814
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 360, 526, 536
CaiI CAGNNNCTG 1 cut(s) 896
CciI TCATGA 2 cut(s) 45, 406
CfoI GCGC 3 cut(s) 536, 538, 644
CseI GACGC 5 cut(s) 502, 610, 682, 804, 888
Csp6I GTAC 1 cut(s) 293
CviAII CATG 5 cut(s) 46, 75, 359, 407, 912
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 3 cut(s) 440, 646, 889
DinI GGCGCC 1 cut(s) 643
DpnI GATC 3 cut(s) 389, 465, 574
DpnII GATC 3 cut(s) 387, 463, 572
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 4 cut(s) 155, 163, 709, 777
EarI CTCTTC 4 cut(s) 155, 163, 709, 777
Eco130I CCWWGG 2 cut(s) 74, 212
Eco147I AGGCCT 1 cut(s) 211
Eco31I GGTCTC 2 cut(s) 246, 757
Eco72I CACGTG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 74, 212
EgeI GGCGCC 1 cut(s) 643
EheI GGCGCC 1 cut(s) 643
ErhI CCWWGG 2 cut(s) 74, 212
Esp3I CGTCTC 1 cut(s) 906
FaeI CATG 5 cut(s) 49, 78, 362, 410, 915
FaqI GGGAC 2 cut(s) 230, 335
FatI CATG 5 cut(s) 45, 74, 358, 406, 911
Fnu4HI GCNGC 4 cut(s) 590, 640, 652, 897
FokI GGATG 3 cut(s) 259, 444, 821
Fsp4HI GCNGC 4 cut(s) 590, 640, 652, 897
FspBI CTAG 5 cut(s) 213, 266, 330, 570, 765
GlaI GCGC 3 cut(s) 535, 537, 643
GluI GCNGC 4 cut(s) 590, 640, 652, 897
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 2 cut(s) 203, 211
HapII CCGG 5 cut(s) 290, 317, 364, 529, 541
HgaI GACGC 5 cut(s) 502, 610, 682, 804, 888
HhaI GCGC 3 cut(s) 536, 538, 644
Hin1I GRCGYC 2 cut(s) 642, 815
Hin1II CATG 5 cut(s) 49, 78, 362, 410, 915
Hin6I GCGC 3 cut(s) 534, 536, 642
HinP1I GCGC 3 cut(s) 534, 536, 642
HindIII AAGCTT 2 cut(s) 17, 131
HinfI GANTC 3 cut(s) 326, 416, 823
HpaII CCGG 5 cut(s) 290, 317, 364, 529, 541
Hpy188I TCNGA 4 cut(s) 246, 487, 583, 730
Hpy188III TCNNGA 5 cut(s) 46, 95, 407, 457, 827
Hpy99I CGWCG 5 cut(s) 518, 626, 718, 721, 820
HpyAV CCTTC 3 cut(s) 172, 764, 768
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 139, 585
HpyCH4V TGCA 2 cut(s) 358, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 598, 648
HpyF3I CTNAG 3 cut(s) 440, 646, 889
HpySE526I ACGT 2 cut(s) 139, 585
Hsp92I GRCGYC 2 cut(s) 642, 815
Hsp92II CATG 5 cut(s) 49, 78, 362, 410, 915
HspAI GCGC 3 cut(s) 534, 536, 642
KasI GGCGCC 1 cut(s) 641
Kzo9I GATC 3 cut(s) 387, 463, 572
LmnI GCTCC 3 cut(s) 194, 543, 618
Lsp1109I GCAGC 2 cut(s) 576, 883
MaeI CTAG 5 cut(s) 213, 266, 330, 570, 765
MaeII ACGT 2 cut(s) 139, 585
MaeIII GTNAC 1 cut(s) 742
MalI GATC 3 cut(s) 389, 465, 574
MboI GATC 3 cut(s) 387, 463, 572
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 2 cut(s) 196, 490
MluI ACGCGT 1 cut(s) 511
MluNI TGGCCA 1 cut(s) 203
Mly113I GGCGCC 1 cut(s) 642
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 406, 753
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
MslI CAYNNNNRTG 2 cut(s) 303, 411
Msp20I TGGCCA 1 cut(s) 203
MspI CCGG 5 cut(s) 290, 317, 364, 529, 541
MspR9I CCNGG 4 cut(s) 318, 364, 530, 610
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 3 cut(s) 513, 536, 676
MwoI GCNNNNNNNGC 3 cut(s) 368, 598, 648
NarI GGCGCC 1 cut(s) 642
NciI CCSGG 3 cut(s) 318, 364, 530
NcoI CCATGG 1 cut(s) 74
NdeII GATC 3 cut(s) 387, 463, 572
NlaIII CATG 5 cut(s) 49, 78, 362, 410, 915
NlaIV GGNNCC 1 cut(s) 643
NmeAIII GCCGAG 2 cut(s) 544, 864
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PagI TCATGA 2 cut(s) 45, 406
PauI GCGCGC 1 cut(s) 534
PceI AGGCCT 1 cut(s) 211
PcsI WCGNNNNNNNCGW 2 cut(s) 719, 812
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 416, 823
PflMI CCANNNNNTGG 1 cut(s) 615
PkrI GCNGC 4 cut(s) 591, 641, 653, 898
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 645
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 608
PspCI CACGTG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 896
PteI GCGCGC 1 cut(s) 534
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 303, 411
SatI GCNGC 4 cut(s) 590, 640, 652, 897
Sau3AI GATC 3 cut(s) 387, 463, 572
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 318, 364, 530, 610
SduI GDGCHC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 303, 411
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 362
Sse9I AATT 2 cut(s) 196, 490
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 4 cut(s) 314, 601, 639, 651
SspDI GGCGCC 1 cut(s) 641
SspMI CTAG 5 cut(s) 213, 266, 330, 570, 765
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 4 cut(s) 316, 362, 528, 608
StyI CCWWGG 2 cut(s) 74, 212
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 2 cut(s) 142, 588
TaqI TCGA 2 cut(s) 262, 846
TasI AATT 2 cut(s) 196, 490
TauI GCSGC 2 cut(s) 642, 654
TfiI GAWTC 2 cut(s) 416, 823
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 2 cut(s) 589, 896
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 4 cut(s) 17, 34, 83, 170
TspGWI ACGGA 2 cut(s) 409, 821
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 615
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 212
XspI CTAG 5 cut(s) 213, 266, 330, 570, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.